RNA–Protein interactions for RNA: ENST00000519474.5

HDAC3-215, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 736 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-215ENST00000519474 TCOF1Q13428 1488 aaKnown RBP14.47□□□□□ -0.09
HDAC3-215ENST00000519474 FAM50AQ14320 339 aaKnown RBP14.47□□□□□ -0.09
HDAC3-215ENST00000519474 PTPN23Q9H3S7 1636 aa14.47□□□□□ -0.09
HDAC3-215ENST00000519474 DAPK1P53355 1430 aa14.46□□□□□ -0.09
HDAC3-215ENST00000519474 NCKAP5LQ9HCH0 1330 aa14.43□□□□□ -0.1
HDAC3-215ENST00000519474 STRCQ7RTU9 1775 aa14.43□□□□□ -0.1
HDAC3-215ENST00000519474 KIF15Q9NS87 1388 aa14.43□□□□□ -0.1
HDAC3-215ENST00000519474 FBXO41Q8TF61 875 aa14.42□□□□□ -0.1
HDAC3-215ENST00000519474 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.42□□□□□ -0.14e-9■■□□□ 11.7
HDAC3-215ENST00000519474 NCOA1Q15788 1441 aa14.41□□□□□ -0.1
HDAC3-215ENST00000519474 CERKQ8TCT0 537 aa14.41□□□□□ -0.1
HDAC3-215ENST00000519474 ANKRD30AQ9BXX3 1397 aa14.41□□□□□ -0.1
HDAC3-215ENST00000519474 DUOX2Q9NRD8 1548 aa14.41□□□□□ -0.1
HDAC3-215ENST00000519474 PTPRTO14522 1441 aa14.4□□□□□ -0.1
HDAC3-215ENST00000519474 SHANK2Q9UPX8 1470 aa14.39□□□□□ -0.11
HDAC3-215ENST00000519474 TNRQ92752 1358 aa14.39□□□□□ -0.11
HDAC3-215ENST00000519474 PKD2Q13563 968 aa14.39□□□□□ -0.11
HDAC3-215ENST00000519474 KDM5DQ9BY66 1539 aa14.39□□□□□ -0.11
HDAC3-215ENST00000519474 PZPP20742 1482 aa14.38□□□□□ -0.11
HDAC3-215ENST00000519474 DNMT1P26358 1616 aaKnown RBP14.38□□□□□ -0.11
HDAC3-215ENST00000519474 THEMISQ8N1K5 641 aaPredicted RBP14.37□□□□□ -0.11
HDAC3-215ENST00000519474 CAMSAP1Q5T5Y3 1602 aa14.37□□□□□ -0.11
HDAC3-215ENST00000519474 FAM135AQ9P2D6 1515 aa14.36□□□□□ -0.11
HDAC3-215ENST00000519474 A2ML1A8K2U0 1454 aa14.36□□□□□ -0.11
HDAC3-215ENST00000519474 ERBINQ96RT1 1412 aa14.35□□□□□ -0.11
HDAC3-215ENST00000519474 RNF17Q9BXT8 1623 aaKnown RBP14.35□□□□□ -0.11
HDAC3-215ENST00000519474 ABCC3O15438 1527 aa14.35□□□□□ -0.11
HDAC3-215ENST00000519474 MROH1Q8NDA8 1641 aa14.34□□□□□ -0.11
HDAC3-215ENST00000519474 EIF2AK4Q9P2K8 1649 aaKnown RBP14.34□□□□□ -0.11
HDAC3-215ENST00000519474 CROCC2H7BZ55 1655 aa14.33□□□□□ -0.11
HDAC3-215ENST00000519474 ITGAEP38570 1179 aa14.33□□□□□ -0.12
HDAC3-215ENST00000519474 ANKLE2Q86XL3 938 aa14.33□□□□□ -0.12
HDAC3-215ENST00000519474 CEP170BQ9Y4F5 1589 aaPredicted RBP14.33□□□□□ -0.12
HDAC3-215ENST00000519474 ADGRL2O95490 1459 aa14.32□□□□□ -0.12
HDAC3-215ENST00000519474 CFAP65Q6ZU64 1925 aaKnown RBP14.32□□□□□ -0.12
HDAC3-215ENST00000519474 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP14.32□□□□□ -0.12
HDAC3-215ENST00000519474 ARHGAP31Q2M1Z3 1444 aa14.32□□□□□ -0.12
HDAC3-215ENST00000519474 PLA2R1Q13018 1463 aa14.31□□□□□ -0.12
HDAC3-215ENST00000519474 MYO3AQ8NEV4 1616 aa14.31□□□□□ -0.12
HDAC3-215ENST00000519474 KANK1Q14678 1352 aa14.31□□□□□ -0.12
HDAC3-215ENST00000519474 ANKRD50Q9ULJ7 1429 aa14.3□□□□□ -0.12
HDAC3-215ENST00000519474 NLRP1Q9C000 1473 aa14.3□□□□□ -0.12
HDAC3-215ENST00000519474 IDI1Q13907 227 aa14.29□□□□□ -0.12
HDAC3-215ENST00000519474 ZNF335Q9H4Z2 1342 aaPredicted RBP14.29□□□□□ -0.12
HDAC3-215ENST00000519474 ERVK-7P63135 1459 aa14.29□□□□□ -0.12
HDAC3-215ENST00000519474 ZNF142P52746 1687 aaPredicted RBP14.29□□□□□ -0.12
HDAC3-215ENST00000519474 SPATA31D1Q6ZQQ2 1576 aa14.28□□□□□ -0.12
HDAC3-215ENST00000519474 CEP152O94986 1710 aa14.27□□□□□ -0.12
HDAC3-215ENST00000519474 ROCK1Q13464 1354 aa14.27□□□□□ -0.12
HDAC3-215ENST00000519474 ZC3H13Q5T200 1668 aaKnown RBP14.26□□□□□ -0.13
HDAC3-215ENST00000519474 LTBP4Q8N2S1 1624 aa14.26□□□□□ -0.13
HDAC3-215ENST00000519474 PRDM15P57071 1507 aaPredicted RBP14.26□□□□□ -0.13
HDAC3-215ENST00000519474 LTKP29376 864 aa14.26□□□□□ -0.13
HDAC3-215ENST00000519474 VWDEQ8N2E2 1590 aa14.26□□□□□ -0.13
HDAC3-215ENST00000519474 UGGT1Q9NYU2 1555 aa14.26□□□□□ -0.13
HDAC3-215ENST00000519474 DEPDC5O75140 1603 aa14.25□□□□□ -0.13
HDAC3-215ENST00000519474 LMTK2Q8IWU2 1503 aa14.25□□□□□ -0.13
HDAC3-215ENST00000519474 TXNDC2Q86VQ3 553 aa14.24□□□□□ -0.13
HDAC3-215ENST00000519474 SLC52A1Q9NWF4 448 aa14.22□□□□□ -0.13
HDAC3-215ENST00000519474 NOS1P29475 1434 aa14.22□□□□□ -0.13
HDAC3-215ENST00000519474 RRBP1Q9P2E9 1410 aaKnown RBP14.22□□□□□ -0.13
HDAC3-215ENST00000519474 STAG3Q9UJ98 1225 aa14.21□□□□□ -0.13
HDAC3-215ENST00000519474 MED14O60244 1454 aa14.2□□□□□ -0.14
HDAC3-215ENST00000519474 NPHP4O75161 1426 aaPredicted RBP14.2□□□□□ -0.14
HDAC3-215ENST00000519474 NEURL4Q96JN8 1562 aa14.19□□□□□ -0.14
HDAC3-215ENST00000519474 EID1Q9Y6B2 187 aa14.19□□□□□ -0.14
HDAC3-215ENST00000519474 NUP155O75694 1391 aa14.19□□□□□ -0.14
HDAC3-215ENST00000519474 TMEM2Q9UHN6 1383 aa14.17□□□□□ -0.14
HDAC3-215ENST00000519474 ARHGAP23Q9P227 1491 aa14.17□□□□□ -0.14
HDAC3-215ENST00000519474 UBR1Q8IWV7 1749 aa14.15□□□□□ -0.14
HDAC3-215ENST00000519474 SLIT1O75093 1534 aa14.15□□□□□ -0.14
HDAC3-215ENST00000519474 EFCAB6Q5THR3 1501 aa14.15□□□□□ -0.14
HDAC3-215ENST00000519474 SYNMO15061 1565 aa14.14□□□□□ -0.15
HDAC3-215ENST00000519474 IQSEC2Q5JU85 1478 aa14.14□□□□□ -0.15
HDAC3-215ENST00000519474 RPRD2Q5VT52 1461 aaKnown RBP14.14□□□□□ -0.15
HDAC3-215ENST00000519474 UBAP1LF5GYI3 381 aa14.14□□□□□ -0.15
HDAC3-215ENST00000519474 POLR1AO95602 1720 aaPredicted RBP14.13□□□□□ -0.15
HDAC3-215ENST00000519474 PIK3C2BO00750 1634 aa14.13□□□□□ -0.15
HDAC3-215ENST00000519474 NAIPQ13075 1403 aa14.13□□□□□ -0.15
HDAC3-215ENST00000519474 SCAF11Q99590 1463 aaKnown RBP14.12□□□□□ -0.15
HDAC3-215ENST00000519474 UNC13BO14795 1591 aa14.12□□□□□ -0.15
HDAC3-215ENST00000519474 CHGAP10645 457 aaKnown RBP14.11□□□□□ -0.15
HDAC3-215ENST00000519474 HDGFP51858 240 aaKnown RBP14.11□□□□□ -0.15
HDAC3-215ENST00000519474 SLC26A8Q96RN1 970 aa14.11□□□□□ -0.15
HDAC3-215ENST00000519474 TET3O43151 1660 aa14.1□□□□□ -0.15
HDAC3-215ENST00000519474 TRIM52Q96A61 297 aa14.09□□□□□ -0.15
HDAC3-215ENST00000519474 IQGAP1P46940 1657 aa14.08□□□□□ -0.16
HDAC3-215ENST00000519474 TOM1O60784 492 aa14.08□□□□□ -0.16
HDAC3-215ENST00000519474 MYT1Q01538 1121 aa14.08□□□□□ -0.16
HDAC3-215ENST00000519474 SENP3Q9H4L4 574 aaPredicted RBP14.08□□□□□ -0.16
HDAC3-215ENST00000519474 CPS1P31327 1500 aa14.08□□□□□ -0.16
HDAC3-215ENST00000519474 IQGAP3Q86VI3 1631 aa14.08□□□□□ -0.16
HDAC3-215ENST00000519474 E9PCH4 1651 aa14.07□□□□□ -0.16
HDAC3-215ENST00000519474 KCNA6P17658 529 aa14.07□□□□□ -0.16
HDAC3-215ENST00000519474 NUTM2DQ5VT03 806 aaPredicted RBP14.07□□□□□ -0.16
HDAC3-215ENST00000519474 BCANQ96GW7 911 aa14.07□□□□□ -0.16
HDAC3-215ENST00000519474 GCC2Q8IWJ2 1684 aa14.07□□□□□ -0.16
HDAC3-215ENST00000519474 ABCF1Q8NE71 845 aaKnown RBP eCLIP14.06□□□□□ -0.16
HDAC3-215ENST00000519474 KDM5AP29375 1690 aaKnown RBP14.06□□□□□ -0.16
HDAC3-215ENST00000519474 STRCP1A6NGW2 1772 aa14.05□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 53 ms