RNA–Protein interactions for RNA: ENST00000498808.5

HDAC6-236, Transcript of histone deacetylase 6, humanhuman

TSL 5

Gene HDAC6, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-236ENST00000498808 MBD5Q9P267 1494 aa25.52■■□□□ 1.68
HDAC6-236ENST00000498808 TOM1O60784 492 aa25.5■■□□□ 1.67
HDAC6-236ENST00000498808 TIAM1Q13009 1591 aa25.5■■□□□ 1.67
HDAC6-236ENST00000498808 TNRQ92752 1358 aa25.5■■□□□ 1.67
HDAC6-236ENST00000498808 MTUS2Q5JR59 1369 aa25.49■■□□□ 1.67
HDAC6-236ENST00000498808 FBXO31Q5XUX0 539 aaPredicted RBP25.49■■□□□ 1.67
HDAC6-236ENST00000498808 RTEL1-TNFRSF6BF6WH68 1400 aa25.48■■□□□ 1.67
HDAC6-236ENST00000498808 DHX29Q7Z478 1369 aaKnown RBP25.48■■□□□ 1.67
HDAC6-236ENST00000498808 VWDEQ8N2E2 1590 aa25.47■■□□□ 1.67
HDAC6-236ENST00000498808 PZPP20742 1482 aa25.47■■□□□ 1.67
HDAC6-236ENST00000498808 ALKQ9UM73 1620 aa25.46■■□□□ 1.67
HDAC6-236ENST00000498808 KDM5DQ9BY66 1539 aa25.44■■□□□ 1.66
HDAC6-236ENST00000498808 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP25.44■■□□□ 1.66
HDAC6-236ENST00000498808 FAM135AQ9P2D6 1515 aa25.42■■□□□ 1.66
HDAC6-236ENST00000498808 KIF3BO15066 747 aa25.41■■□□□ 1.66
HDAC6-236ENST00000498808 ANKLE2Q86XL3 938 aa25.4■■□□□ 1.66
HDAC6-236ENST00000498808 EHBP1L1Q8N3D4 1523 aa25.39■■□□□ 1.66
HDAC6-236ENST00000498808 MED14O60244 1454 aa25.39■■□□□ 1.65
HDAC6-236ENST00000498808 NPHP4O75161 1426 aaPredicted RBP25.37■■□□□ 1.65
HDAC6-236ENST00000498808 DEPDC5O75140 1603 aa25.37■■□□□ 1.65
HDAC6-236ENST00000498808 MIA2Q96PC5 1412 aa25.37■■□□□ 1.65
HDAC6-236ENST00000498808 UGGT1Q9NYU2 1555 aa25.36■■□□□ 1.65
HDAC6-236ENST00000498808 NLRP1Q9C000 1473 aa25.36■■□□□ 1.65
HDAC6-236ENST00000498808 THEMISQ8N1K5 641 aaPredicted RBP25.36■■□□□ 1.65
HDAC6-236ENST00000498808 CCDC141Q6ZP82 1450 aa25.35■■□□□ 1.65
HDAC6-236ENST00000498808 CEP162Q5TB80 1403 aa25.35■■□□□ 1.65
HDAC6-236ENST00000498808 WASHC2CQ9Y4E1 1318 aa25.35■■□□□ 1.65
HDAC6-236ENST00000498808 PHF23Q9BUL5 403 aaPredicted RBP25.34■■□□□ 1.65
HDAC6-236ENST00000498808 STRCP1A6NGW2 1772 aa25.33■■□□□ 1.65
HDAC6-236ENST00000498808 IQGAP1P46940 1657 aa25.32■■□□□ 1.64
HDAC6-236ENST00000498808 CAMSAP2Q08AD1 1489 aa25.3■■□□□ 1.64
HDAC6-236ENST00000498808 LRRC7Q96NW7 1537 aa25.29■■□□□ 1.64
HDAC6-236ENST00000498808 RNF17Q9BXT8 1623 aaKnown RBP25.26■■□□□ 1.63
HDAC6-236ENST00000498808 SENP3Q9H4L4 574 aaPredicted RBP25.25■■□□□ 1.63
HDAC6-236ENST00000498808 SYNMO15061 1565 aa25.25■■□□□ 1.63
HDAC6-236ENST00000498808 NCOA2Q15596 1464 aa25.24■■□□□ 1.63
HDAC6-236ENST00000498808 RSPH4AQ5TD94 716 aa25.23■■□□□ 1.63
HDAC6-236ENST00000498808 ARHGEF5Q12774 1597 aa25.22■■□□□ 1.63
HDAC6-236ENST00000498808 ABCC3O15438 1527 aa25.22■■□□□ 1.63
HDAC6-236ENST00000498808 ZC3H13Q5T200 1668 aaKnown RBP25.21■■□□□ 1.63
HDAC6-236ENST00000498808 ERVK-7P63135 1459 aa25.19■■□□□ 1.62
HDAC6-236ENST00000498808 RGS17Q9UGC6 210 aaPredicted RBP25.16■■□□□ 1.62
HDAC6-236ENST00000498808 UBR1Q8IWV7 1749 aa25.15■■□□□ 1.62
HDAC6-236ENST00000498808 TSPY4P0CV99 314 aa25.14■■□□□ 1.62
HDAC6-236ENST00000498808 TSPY10P0CW01 314 aa25.14■■□□□ 1.62
HDAC6-236ENST00000498808 MROH1Q8NDA8 1641 aa25.14■■□□□ 1.61
HDAC6-236ENST00000498808 SCAF11Q99590 1463 aaKnown RBP25.12■■□□□ 1.61
HDAC6-236ENST00000498808 MAST1Q9Y2H9 1570 aa25.12■■□□□ 1.61
HDAC6-236ENST00000498808 XIRP1Q702N8 1843 aaKnown RBP25.12■■□□□ 1.61
HDAC6-236ENST00000498808 EIF2AK4Q9P2K8 1649 aaKnown RBP25.12■■□□□ 1.61
HDAC6-236ENST00000498808 CEP152O94986 1710 aa25.1■■□□□ 1.61
HDAC6-236ENST00000498808 CFAP65Q6ZU64 1925 aaKnown RBP25.1■■□□□ 1.61
HDAC6-236ENST00000498808 ARHGAP23Q9P227 1491 aa25.09■■□□□ 1.61
HDAC6-236ENST00000498808 LTKP29376 864 aa25.07■■□□□ 1.6
HDAC6-236ENST00000498808 SLIT1O75093 1534 aa25.07■■□□□ 1.6
HDAC6-236ENST00000498808 TXNDC2Q86VQ3 553 aa25.03■■□□□ 1.6
HDAC6-236ENST00000498808 FAM135BQ49AJ0 1406 aa25■■□□□ 1.59
HDAC6-236ENST00000498808 LRRC9Q6ZRR7 1453 aa24.97■■□□□ 1.59
HDAC6-236ENST00000498808 ARHGAP31Q2M1Z3 1444 aa24.97■■□□□ 1.59
HDAC6-236ENST00000498808 POTEAQ6S8J7 498 aa24.97■■□□□ 1.59
HDAC6-236ENST00000498808 PRDM15P57071 1507 aaPredicted RBP24.96■■□□□ 1.59
HDAC6-236ENST00000498808 DUOX2Q9NRD8 1548 aa24.96■■□□□ 1.59
HDAC6-236ENST00000498808 PIK3C2BO00750 1634 aa24.96■■□□□ 1.59
HDAC6-236ENST00000498808 EID1Q9Y6B2 187 aa24.94■■□□□ 1.58
HDAC6-236ENST00000498808 TMEM94Q12767 1356 aa24.93■■□□□ 1.58
HDAC6-236ENST00000498808 TMEM2Q9UHN6 1383 aa24.93■■□□□ 1.58
HDAC6-236ENST00000498808 MAP3K1Q13233 1512 aa24.91■■□□□ 1.58
HDAC6-236ENST00000498808 ROBO1Q9Y6N7 1651 aa24.91■■□□□ 1.58
HDAC6-236ENST00000498808 MYOM3Q5VTT5 1437 aa24.89■■□□□ 1.58
HDAC6-236ENST00000498808 KIF15Q9NS87 1388 aa24.88■■□□□ 1.57
HDAC6-236ENST00000498808 ERBINQ96RT1 1412 aa24.86■■□□□ 1.57
HDAC6-236ENST00000498808 TET3O43151 1660 aa24.86■■□□□ 1.57
HDAC6-236ENST00000498808 KDM5AP29375 1690 aaKnown RBP24.86■■□□□ 1.57
HDAC6-236ENST00000498808 KCNA6P17658 529 aa24.86■■□□□ 1.57
HDAC6-236ENST00000498808 EFCAB6Q5THR3 1501 aa24.86■■□□□ 1.57
HDAC6-236ENST00000498808 KANK4Q5T7N3 995 aaPredicted RBP24.85■■□□□ 1.57
HDAC6-236ENST00000498808 RBM33Q96EV2 1170 aaKnown RBP24.85■■□□□ 1.57
HDAC6-236ENST00000498808 VPS8Q8N3P4 1428 aa24.85■■□□□ 1.57
HDAC6-236ENST00000498808 SETD1AO15047 1707 aaKnown RBP24.84■■□□□ 1.57
HDAC6-236ENST00000498808 CROCC2H7BZ55 1655 aa24.83■■□□□ 1.57
HDAC6-236ENST00000498808 STAG3Q9UJ98 1225 aa24.83■■□□□ 1.57
HDAC6-236ENST00000498808 PROSER2Q86WR7 435 aaPredicted RBP24.82■■□□□ 1.56
HDAC6-236ENST00000498808 SLC26A8Q96RN1 970 aa24.82■■□□□ 1.56
HDAC6-236ENST00000498808 GRWD1Q9BQ67 446 aaKnown RBP eCLIP24.82■■□□□ 1.56
HDAC6-236ENST00000498808 NWD1Q149M9 1564 aa24.81■■□□□ 1.56
HDAC6-236ENST00000498808 ABCC5O15440 1437 aa24.81■■□□□ 1.56
HDAC6-236ENST00000498808 IDI1Q13907 227 aa24.81■■□□□ 1.56
HDAC6-236ENST00000498808 RRP7BPQ9NSQ0 103 aa24.81■■□□□ 1.56
HDAC6-236ENST00000498808 NKTRP30414 1462 aaKnown RBP24.8■■□□□ 1.56
HDAC6-236ENST00000498808 LMTK2Q8IWU2 1503 aa24.78■■□□□ 1.56
HDAC6-236ENST00000498808 PHLPP1O60346 1717 aa24.77■■□□□ 1.56
HDAC6-236ENST00000498808 KANK1Q14678 1352 aa24.76■■□□□ 1.55
HDAC6-236ENST00000498808 ADGRB3O60242 1522 aa24.76■■□□□ 1.55
HDAC6-236ENST00000498808 MSH6P52701 1360 aa24.74■■□□□ 1.55
HDAC6-236ENST00000498808 NOS1P29475 1434 aa24.74■■□□□ 1.55
HDAC6-236ENST00000498808 JCADQ9P266 1359 aa24.73■■□□□ 1.55
HDAC6-236ENST00000498808 PTPN23Q9H3S7 1636 aa24.72■■□□□ 1.55
HDAC6-236ENST00000498808 DAPK1P53355 1430 aa24.72■■□□□ 1.55
HDAC6-236ENST00000498808 SLAIN2Q9P270 581 aa24.71■■□□□ 1.55
HDAC6-236ENST00000498808 COL16A1Q07092 1604 aaPredicted RBP24.7■■□□□ 1.54
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms