RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 ANKRD50Q9ULJ7 1429 aa22.15■■□□□ 1.14
MSH5-SAPCD1-208ENST00000498473 PKD2Q13563 968 aa22.15■■□□□ 1.14
MSH5-SAPCD1-208ENST00000498473 BCORL1Q5H9F3 1711 aa22.15■■□□□ 1.14
MSH5-SAPCD1-208ENST00000498473 ADGRL1O94910 1474 aa22.15■■□□□ 1.14
MSH5-SAPCD1-208ENST00000498473 TRAPPC8Q9Y2L5 1435 aa22.14■■□□□ 1.14
MSH5-SAPCD1-208ENST00000498473 MYT1LQ9UL68 1186 aa22.14■■□□□ 1.13
MSH5-SAPCD1-208ENST00000498473 SCAPERQ9BY12 1400 aa22.13■■□□□ 1.13
MSH5-SAPCD1-208ENST00000498473 SHANK2Q9UPX8 1470 aa22.13■■□□□ 1.13
MSH5-SAPCD1-208ENST00000498473 MRS2Q9HD23 443 aa22.12■■□□□ 1.13
MSH5-SAPCD1-208ENST00000498473 RBM19Q9Y4C8 960 aaKnown RBP22.11■■□□□ 1.13
MSH5-SAPCD1-208ENST00000498473 FAM9BQ8IZU0 186 aa22.11■■□□□ 1.13
MSH5-SAPCD1-208ENST00000498473 ABCC1P33527 1531 aa22.1■■□□□ 1.13
MSH5-SAPCD1-208ENST00000498473 KDM5CP41229 1560 aa22.1■■□□□ 1.13
MSH5-SAPCD1-208ENST00000498473 IRX6P78412 446 aaPredicted RBP22.1■■□□□ 1.13
MSH5-SAPCD1-208ENST00000498473 DHX29Q7Z478 1369 aaKnown RBP22.09■■□□□ 1.13
MSH5-SAPCD1-208ENST00000498473 C9orf84Q5VXU9 1444 aa22.09■■□□□ 1.13
MSH5-SAPCD1-208ENST00000498473 USP47Q96K76 1375 aa22.09■■□□□ 1.13
MSH5-SAPCD1-208ENST00000498473 COL17A1Q9UMD9 1497 aaPredicted RBP22.08■■□□□ 1.13
MSH5-SAPCD1-208ENST00000498473 KDM5DQ9BY66 1539 aa22.08■■□□□ 1.12
MSH5-SAPCD1-208ENST00000498473 ZBED9Q6R2W3 1325 aa22.07■■□□□ 1.12
MSH5-SAPCD1-208ENST00000498473 UHRF1BP1Q6BDS2 1440 aa22.07■■□□□ 1.12
MSH5-SAPCD1-208ENST00000498473 NUP155O75694 1391 aa22.05■■□□□ 1.12
MSH5-SAPCD1-208ENST00000498473 ERICH6BQ5W0A0 696 aa22.04■■□□□ 1.12
MSH5-SAPCD1-208ENST00000498473 ARAP3Q8WWN8 1544 aa22.03■■□□□ 1.12
MSH5-SAPCD1-208ENST00000498473 RALGAPBQ86X10 1494 aa22.03■■□□□ 1.12
MSH5-SAPCD1-208ENST00000498473 ZNF326Q5BKZ1 582 aaKnown RBP22.03■■□□□ 1.12
MSH5-SAPCD1-208ENST00000498473 ARHGEF5Q12774 1597 aa22.03■■□□□ 1.12
MSH5-SAPCD1-208ENST00000498473 TSPY4P0CV99 314 aa22.02■■□□□ 1.11
MSH5-SAPCD1-208ENST00000498473 TSPY10P0CW01 314 aa22.02■■□□□ 1.11
MSH5-SAPCD1-208ENST00000498473 CCDC141Q6ZP82 1450 aa22.01■■□□□ 1.11
MSH5-SAPCD1-208ENST00000498473 ARID4BQ4LE39 1312 aaPredicted RBP22.01■■□□□ 1.11
MSH5-SAPCD1-208ENST00000498473 NEO1Q92859 1461 aa21.99■■□□□ 1.11
MSH5-SAPCD1-208ENST00000498473 SPAG9O60271 1321 aaKnown RBP21.98■■□□□ 1.11
MSH5-SAPCD1-208ENST00000498473 CFAP74Q9C0B2 1584 aa21.97■■□□□ 1.11
MSH5-SAPCD1-208ENST00000498473 KIF15Q9NS87 1388 aa21.97■■□□□ 1.11
MSH5-SAPCD1-208ENST00000498473 POGZQ7Z3K3 1410 aa21.96■■□□□ 1.11
MSH5-SAPCD1-208ENST00000498473 PPP4R2Q9NY27 417 aa21.96■■□□□ 1.11
MSH5-SAPCD1-208ENST00000498473 FRMPD1Q5SYB0 1578 aa21.96■■□□□ 1.11
MSH5-SAPCD1-208ENST00000498473 RICTORQ6R327 1708 aa21.95■■□□□ 1.1
MSH5-SAPCD1-208ENST00000498473 PLEKHH2Q8IVE3 1493 aa21.94■■□□□ 1.1
MSH5-SAPCD1-208ENST00000498473 YEATS2Q9ULM3 1422 aa21.93■■□□□ 1.1
MSH5-SAPCD1-208ENST00000498473 POLR3GLQ9BT43 218 aa21.92■■□□□ 1.1
MSH5-SAPCD1-208ENST00000498473 ZNF518AQ6AHZ1 1483 aa21.92■■□□□ 1.1
MSH5-SAPCD1-208ENST00000498473 CARD11Q9BXL7 1154 aa21.92■■□□□ 1.1
MSH5-SAPCD1-208ENST00000498473 ROCK2O75116 1388 aaKnown RBP21.91■■□□□ 1.1
MSH5-SAPCD1-208ENST00000498473 KIDINS220Q9ULH0 1771 aa21.9■■□□□ 1.1
MSH5-SAPCD1-208ENST00000498473 ZFYVE16Q7Z3T8 1539 aa21.89■■□□□ 1.1
MSH5-SAPCD1-208ENST00000498473 FAM135AQ9P2D6 1515 aa21.89■■□□□ 1.09
MSH5-SAPCD1-208ENST00000498473 SMG6Q86US8 1419 aaKnown RBP21.88■■□□□ 1.09
MSH5-SAPCD1-208ENST00000498473 ATP7AQ04656 1500 aa21.88■■□□□ 1.09
MSH5-SAPCD1-208ENST00000498473 CNGB1Q14028 1251 aaPredicted RBP21.87■■□□□ 1.09
MSH5-SAPCD1-208ENST00000498473 KDM2AQ9Y2K7 1162 aa21.87■■□□□ 1.09
MSH5-SAPCD1-208ENST00000498473 DCAF11Q8TEB1 546 aa21.86■■□□□ 1.09
MSH5-SAPCD1-208ENST00000498473 ST20-MTHFSA0A0A6YYL1 179 aa21.86■■□□□ 1.09
MSH5-SAPCD1-208ENST00000498473 E9PCH4 1651 aa21.85■■□□□ 1.09
MSH5-SAPCD1-208ENST00000498473 RSPH4AQ5TD94 716 aa21.85■■□□□ 1.09
MSH5-SAPCD1-208ENST00000498473 INO80Q9ULG1 1556 aaPredicted RBP21.84■■□□□ 1.09
MSH5-SAPCD1-208ENST00000498473 PNISRQ8TF01 805 aaKnown RBP21.84■■□□□ 1.09
MSH5-SAPCD1-208ENST00000498473 ABCA6Q8N139 1617 aa21.84■■□□□ 1.09
MSH5-SAPCD1-208ENST00000498473 HECW2Q9P2P5 1572 aa21.84■■□□□ 1.09
MSH5-SAPCD1-208ENST00000498473 GRWD1Q9BQ67 446 aaKnown RBP eCLIP21.84■■□□□ 1.097e-7■■□□□ 12.5
MSH5-SAPCD1-208ENST00000498473 MAST1Q9Y2H9 1570 aa21.84■■□□□ 1.09
MSH5-SAPCD1-208ENST00000498473 UNC13BO14795 1591 aa21.82■■□□□ 1.08
MSH5-SAPCD1-208ENST00000498473 MSH5O43196 834 aa21.82■■□□□ 1.08
MSH5-SAPCD1-208ENST00000498473 TRPM1Q7Z4N2 1603 aa21.82■■□□□ 1.08
MSH5-SAPCD1-208ENST00000498473 B4GALNT3Q6L9W6 998 aa21.81■■□□□ 1.08
MSH5-SAPCD1-208ENST00000498473 NUDCQ9Y266 331 aa21.8■■□□□ 1.08
MSH5-SAPCD1-208ENST00000498473 FANCIQ9NVI1 1328 aa21.8■■□□□ 1.08
MSH5-SAPCD1-208ENST00000498473 RNF123Q5XPI4 1314 aa21.8■■□□□ 1.08
MSH5-SAPCD1-208ENST00000498473 SIGLEC1Q9BZZ2 1709 aa21.8■■□□□ 1.08
MSH5-SAPCD1-208ENST00000498473 MLECQ14165 292 aa21.79■■□□□ 1.08
MSH5-SAPCD1-208ENST00000498473 PRAG1Q86YV5 1406 aa21.79■■□□□ 1.08
MSH5-SAPCD1-208ENST00000498473 PLA2R1Q13018 1463 aa21.79■■□□□ 1.08
MSH5-SAPCD1-208ENST00000498473 KIF3BO15066 747 aa21.78■■□□□ 1.08
MSH5-SAPCD1-208ENST00000498473 DIP2CQ9Y2E4 1556 aa21.77■■□□□ 1.08
MSH5-SAPCD1-208ENST00000498473 LRPPRCP42704 1394 aaKnown RBP21.77■■□□□ 1.08
MSH5-SAPCD1-208ENST00000498473 MLH3Q9UHC1 1453 aa21.76■■□□□ 1.07
MSH5-SAPCD1-208ENST00000498473 CCDC144AA2RUR9 1427 aa21.76■■□□□ 1.07
MSH5-SAPCD1-208ENST00000498473 TMC1Q8TDI8 760 aa21.76■■□□□ 1.07
MSH5-SAPCD1-208ENST00000498473 GGT6Q6P531 493 aa21.75■■□□□ 1.07
MSH5-SAPCD1-208ENST00000498473 KTN1Q86UP2 1357 aaKnown RBP21.75■■□□□ 1.07
MSH5-SAPCD1-208ENST00000498473 PLXNC1O60486 1568 aa21.75■■□□□ 1.07
MSH5-SAPCD1-208ENST00000498473 IQGAP3Q86VI3 1631 aa21.74■■□□□ 1.07
MSH5-SAPCD1-208ENST00000498473 BRD4O60885 1362 aaPredicted RBP21.74■■□□□ 1.07
MSH5-SAPCD1-208ENST00000498473 RTEL1-TNFRSF6BF6WH68 1400 aa21.73■■□□□ 1.07
MSH5-SAPCD1-208ENST00000498473 MYBBP1AQ9BQG0 1328 aaKnown RBP21.73■■□□□ 1.07
MSH5-SAPCD1-208ENST00000498473 A2MP01023 1474 aa21.73■■□□□ 1.07
MSH5-SAPCD1-208ENST00000498473 RALBP1Q15311 655 aa21.73■■□□□ 1.07
MSH5-SAPCD1-208ENST00000498473 ZMYM4Q5VZL5 1548 aa21.72■■□□□ 1.07
MSH5-SAPCD1-208ENST00000498473 GPRASP1Q5JY77 1395 aa21.72■■□□□ 1.07
MSH5-SAPCD1-208ENST00000498473 LAMC1P11047 1609 aa21.71■■□□□ 1.07
MSH5-SAPCD1-208ENST00000498473 NBPF1Q3BBV0 1214 aa21.71■■□□□ 1.07
MSH5-SAPCD1-208ENST00000498473 SENP3-EIF4A1A0A087X0R7 540 aa21.7■■□□□ 1.06
MSH5-SAPCD1-208ENST00000498473 DUOX2Q9NRD8 1548 aa21.69■■□□□ 1.06
MSH5-SAPCD1-208ENST00000498473 RGL3Q3MIN7 710 aa21.68■■□□□ 1.06
MSH5-SAPCD1-208ENST00000498473 PRDM15P57071 1507 aaPredicted RBP21.67■■□□□ 1.06
MSH5-SAPCD1-208ENST00000498473 PLPPR3Q6T4P5 718 aa21.67■■□□□ 1.06
MSH5-SAPCD1-208ENST00000498473 MAGI2Q86UL8 1455 aa21.67■■□□□ 1.06
MSH5-SAPCD1-208ENST00000498473 PARD3Q8TEW0 1356 aa21.66■■□□□ 1.06
MSH5-SAPCD1-208ENST00000498473 ATP10AO60312 1499 aa21.66■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms