RNA–Protein interactions for RNA: ENST00000493949.1

PDLIM1-205, Transcript of PDZ and LIM domain 1, humanhuman

TSL 3

Gene PDLIM1, Length 795 nt, Biotype processed transcript.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM1-205ENST00000493949 ATP7AQ04656 1500 aa16.66■□□□□ 0.26
PDLIM1-205ENST00000493949 RNF216Q9NWF9 866 aaPredicted RBP16.66■□□□□ 0.26
PDLIM1-205ENST00000493949 ARHGAP35Q9NRY4 1499 aa16.66■□□□□ 0.26
PDLIM1-205ENST00000493949 A2MP01023 1474 aa16.65■□□□□ 0.26
PDLIM1-205ENST00000493949 DEPDC5O75140 1603 aa16.64■□□□□ 0.25
PDLIM1-205ENST00000493949 MED14O60244 1454 aa16.64■□□□□ 0.25
PDLIM1-205ENST00000493949 SPAG9O60271 1321 aaKnown RBP16.64■□□□□ 0.25
PDLIM1-205ENST00000493949 RNF17Q9BXT8 1623 aaKnown RBP16.63■□□□□ 0.25
PDLIM1-205ENST00000493949 SYCP2Q9BX26 1530 aa16.63■□□□□ 0.25
PDLIM1-205ENST00000493949 STRCP1A6NGW2 1772 aa16.63■□□□□ 0.25
PDLIM1-205ENST00000493949 ADGBQ8N7X0 1667 aa16.62■□□□□ 0.25
PDLIM1-205ENST00000493949 SYNMO15061 1565 aa16.61■□□□□ 0.25
PDLIM1-205ENST00000493949 GGT6Q6P531 493 aa16.59■□□□□ 0.25
PDLIM1-205ENST00000493949 KIAA1107Q9UPP5 1409 aa16.59■□□□□ 0.25
PDLIM1-205ENST00000493949 LRRC7Q96NW7 1537 aa16.59■□□□□ 0.25
PDLIM1-205ENST00000493949 IQGAP1P46940 1657 aa16.59■□□□□ 0.25
PDLIM1-205ENST00000493949 C1QBPQ07021 282 aaKnown RBP16.58■□□□□ 0.24
PDLIM1-205ENST00000493949 ANKLE2Q86XL3 938 aa16.58■□□□□ 0.24
PDLIM1-205ENST00000493949 CCDC18Q5T9S5 1454 aa16.58■□□□□ 0.24
PDLIM1-205ENST00000493949 NPHP4O75161 1426 aaPredicted RBP16.57■□□□□ 0.24
PDLIM1-205ENST00000493949 TNRQ92752 1358 aa16.57■□□□□ 0.24
PDLIM1-205ENST00000493949 FAM135AQ9P2D6 1515 aa16.56■□□□□ 0.24
PDLIM1-205ENST00000493949 PCGF6Q9BYE7 350 aa16.56■□□□□ 0.24
PDLIM1-205ENST00000493949 GPATCH8Q9UKJ3 1502 aaKnown RBP16.55■□□□□ 0.24
PDLIM1-205ENST00000493949 PZPP20742 1482 aa16.55■□□□□ 0.24
PDLIM1-205ENST00000493949 PLEKHH2Q8IVE3 1493 aa16.55■□□□□ 0.24
PDLIM1-205ENST00000493949 ZEB1P37275 1124 aaPredicted RBP16.55■□□□□ 0.24
PDLIM1-205ENST00000493949 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP16.54■□□□□ 0.24
PDLIM1-205ENST00000493949 HNRNPMP52272 730 aaKnown RBP eCLIP16.54■□□□□ 0.24
PDLIM1-205ENST00000493949 THEMISQ8N1K5 641 aaPredicted RBP16.54■□□□□ 0.24
PDLIM1-205ENST00000493949 NLRP1Q9C000 1473 aa16.54■□□□□ 0.24
PDLIM1-205ENST00000493949 TRIM26Q12899 539 aaPredicted RBP16.53■□□□□ 0.24
PDLIM1-205ENST00000493949 POTEAQ6S8J7 498 aa16.53■□□□□ 0.24
PDLIM1-205ENST00000493949 XIRP1Q702N8 1843 aaKnown RBP16.53■□□□□ 0.24
PDLIM1-205ENST00000493949 UGGT1Q9NYU2 1555 aa16.52■□□□□ 0.24
PDLIM1-205ENST00000493949 CASKIN1Q8WXD9 1431 aa16.52■□□□□ 0.23
PDLIM1-205ENST00000493949 ZC3H13Q5T200 1668 aaKnown RBP16.51■□□□□ 0.23
PDLIM1-205ENST00000493949 FBXO31Q5XUX0 539 aaPredicted RBP16.51■□□□□ 0.23
PDLIM1-205ENST00000493949 ZNF777Q9ULD5 760 aaPredicted RBP16.51■□□□□ 0.23
PDLIM1-205ENST00000493949 SETD1AO15047 1707 aaKnown RBP16.5■□□□□ 0.23
PDLIM1-205ENST00000493949 KDM5DQ9BY66 1539 aa16.5■□□□□ 0.23
PDLIM1-205ENST00000493949 MIA2Q96PC5 1412 aa16.49■□□□□ 0.23
PDLIM1-205ENST00000493949 UBTFP17480 764 aaKnown RBP16.47■□□□□ 0.23
PDLIM1-205ENST00000493949 RTEL1-TNFRSF6BF6WH68 1400 aa16.46■□□□□ 0.23
PDLIM1-205ENST00000493949 FAM135BQ49AJ0 1406 aa16.46■□□□□ 0.23
PDLIM1-205ENST00000493949 DHX29Q7Z478 1369 aaKnown RBP16.46■□□□□ 0.23
PDLIM1-205ENST00000493949 CFDP1Q9UEE9 299 aaPredicted RBP16.43■□□□□ 0.22
PDLIM1-205ENST00000493949 MBD5Q9P267 1494 aa16.42■□□□□ 0.22
PDLIM1-205ENST00000493949 FYCO1Q9BQS8 1478 aa16.42■□□□□ 0.22
PDLIM1-205ENST00000493949 UBR1Q8IWV7 1749 aa16.39■□□□□ 0.21
PDLIM1-205ENST00000493949 ROBO1Q9Y6N7 1651 aa16.38■□□□□ 0.21
PDLIM1-205ENST00000493949 KIF3BO15066 747 aa16.38■□□□□ 0.21
PDLIM1-205ENST00000493949 WASHC2CQ9Y4E1 1318 aa16.38■□□□□ 0.21
PDLIM1-205ENST00000493949 CCNB3Q8WWL7 1395 aa16.38■□□□□ 0.21
PDLIM1-205ENST00000493949 SCAF11Q99590 1463 aaKnown RBP16.35■□□□□ 0.21
PDLIM1-205ENST00000493949 SRCAPQ6ZRS2 3230 aa16.35■□□□□ 0.21
PDLIM1-205ENST00000493949 PELP1Q8IZL8 1130 aaKnown RBP16.35■□□□□ 0.21
PDLIM1-205ENST00000493949 UPF1Q92900 1129 aaKnown RBP eCLIP16.35■□□□□ 0.21
PDLIM1-205ENST00000493949 ARHGAP23Q9P227 1491 aa16.34■□□□□ 0.21
PDLIM1-205ENST00000493949 SLIT1O75093 1534 aa16.33■□□□□ 0.2
PDLIM1-205ENST00000493949 TIAM1Q13009 1591 aa16.33■□□□□ 0.2
PDLIM1-205ENST00000493949 ZNF644Q9H582 1327 aaPredicted RBP16.32■□□□□ 0.2
PDLIM1-205ENST00000493949 ERVK-7P63135 1459 aa16.31■□□□□ 0.2
PDLIM1-205ENST00000493949 NCOA2Q15596 1464 aa16.31■□□□□ 0.2
PDLIM1-205ENST00000493949 LRRC9Q6ZRR7 1453 aa16.31■□□□□ 0.2
PDLIM1-205ENST00000493949 CFAP65Q6ZU64 1925 aaKnown RBP16.31■□□□□ 0.2
PDLIM1-205ENST00000493949 ABCC3O15438 1527 aa16.29■□□□□ 0.2
PDLIM1-205ENST00000493949 MAP3K1Q13233 1512 aa16.29■□□□□ 0.2
PDLIM1-205ENST00000493949 PHLPP1O60346 1717 aa16.29■□□□□ 0.2
PDLIM1-205ENST00000493949 CCDC141Q6ZP82 1450 aa16.29■□□□□ 0.2
PDLIM1-205ENST00000493949 LTKP29376 864 aa16.28■□□□□ 0.2
PDLIM1-205ENST00000493949 TMEM94Q12767 1356 aa16.26■□□□□ 0.19
PDLIM1-205ENST00000493949 JCADQ9P266 1359 aa16.26■□□□□ 0.19
PDLIM1-205ENST00000493949 RSPH4AQ5TD94 716 aa16.25■□□□□ 0.19
PDLIM1-205ENST00000493949 CAMSAP2Q08AD1 1489 aa16.24■□□□□ 0.19
PDLIM1-205ENST00000493949 TXNDC2Q86VQ3 553 aa16.24■□□□□ 0.19
PDLIM1-205ENST00000493949 MTUS2Q5JR59 1369 aa16.24■□□□□ 0.19
PDLIM1-205ENST00000493949 COL16A1Q07092 1604 aaPredicted RBP16.23■□□□□ 0.19
PDLIM1-205ENST00000493949 EIF2AK4Q9P2K8 1649 aaKnown RBP16.23■□□□□ 0.19
PDLIM1-205ENST00000493949 MROH1Q8NDA8 1641 aa16.23■□□□□ 0.19
PDLIM1-205ENST00000493949 CEP152O94986 1710 aa16.22■□□□□ 0.19
PDLIM1-205ENST00000493949 ARHGEF5Q12774 1597 aa16.22■□□□□ 0.19
PDLIM1-205ENST00000493949 KDM5AP29375 1690 aaKnown RBP16.22■□□□□ 0.19
PDLIM1-205ENST00000493949 PRDM15P57071 1507 aaPredicted RBP16.22■□□□□ 0.19
PDLIM1-205ENST00000493949 CDK12Q9NYV4 1490 aaPredicted RBP16.22■□□□□ 0.19
PDLIM1-205ENST00000493949 EHBP1L1Q8N3D4 1523 aa16.21■□□□□ 0.19
PDLIM1-205ENST00000493949 LRP6O75581 1613 aa16.21■□□□□ 0.19
PDLIM1-205ENST00000493949 ZNF772Q68DY9 489 aaPredicted RBP16.21■□□□□ 0.19
PDLIM1-205ENST00000493949 NWD1Q149M9 1564 aa16.21■□□□□ 0.18
PDLIM1-205ENST00000493949 CEP162Q5TB80 1403 aa16.2■□□□□ 0.18
PDLIM1-205ENST00000493949 LOC105371045A0A1W2PR82 267 aa16.2■□□□□ 0.18
PDLIM1-205ENST00000493949 KCNA6P17658 529 aa16.2■□□□□ 0.18
PDLIM1-205ENST00000493949 EID1Q9Y6B2 187 aa16.2■□□□□ 0.18
PDLIM1-205ENST00000493949 NKTRP30414 1462 aaKnown RBP16.2■□□□□ 0.18
PDLIM1-205ENST00000493949 TET3O43151 1660 aa16.2■□□□□ 0.18
PDLIM1-205ENST00000493949 FGD6Q6ZV73 1430 aa16.19■□□□□ 0.18
PDLIM1-205ENST00000493949 SPATA31A6Q5VVP1 1343 aa16.19■□□□□ 0.18
PDLIM1-205ENST00000493949 SHPRHQ149N8 1683 aa16.18■□□□□ 0.18
PDLIM1-205ENST00000493949 PIK3C2BO00750 1634 aa16.18■□□□□ 0.18
PDLIM1-205ENST00000493949 TMEM2Q9UHN6 1383 aa16.17■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 54.9 ms