RNA–Protein interactions for RNA: ENST00000485792.1

CUX1-208, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 564 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-208ENST00000485792 TCOF1Q13428 1488 aaKnown RBP9.19□□□□□ -0.94
CUX1-208ENST00000485792 DNMT1P26358 1616 aaKnown RBP9.19□□□□□ -0.94
CUX1-208ENST00000485792 C3P01024 1663 aa9.19□□□□□ -0.94
CUX1-208ENST00000485792 AGLP35573 1532 aa9.18□□□□□ -0.94
CUX1-208ENST00000485792 MYOM3Q5VTT5 1437 aa9.18□□□□□ -0.94
CUX1-208ENST00000485792 C9orf84Q5VXU9 1444 aa9.18□□□□□ -0.94
CUX1-208ENST00000485792 AFAP1Q8N556 730 aa9.18□□□□□ -0.94
CUX1-208ENST00000485792 KIAA1107Q9UPP5 1409 aa9.17□□□□□ -0.94
CUX1-208ENST00000485792 PTPRMP28827 1452 aa9.16□□□□□ -0.94
CUX1-208ENST00000485792 CCNB3Q8WWL7 1395 aa9.16□□□□□ -0.94
CUX1-208ENST00000485792 EFCAB2Q5VUJ9 269 aa9.16□□□□□ -0.94
CUX1-208ENST00000485792 RNF17Q9BXT8 1623 aaKnown RBP9.16□□□□□ -0.94
CUX1-208ENST00000485792 ATP10AO60312 1499 aa9.15□□□□□ -0.94
CUX1-208ENST00000485792 CCDC141Q6ZP82 1450 aa9.15□□□□□ -0.94
CUX1-208ENST00000485792 REM2Q8IYK8 340 aaPredicted RBP9.15□□□□□ -0.94
CUX1-208ENST00000485792 SSUH2Q9Y2M2 353 aa9.15□□□□□ -0.94
CUX1-208ENST00000485792 CLTCQ00610 1675 aaKnown RBP9.15□□□□□ -0.94
CUX1-208ENST00000485792 PTPRKQ15262 1439 aa9.14□□□□□ -0.95
CUX1-208ENST00000485792 FGD6Q6ZV73 1430 aa9.14□□□□□ -0.95
CUX1-208ENST00000485792 LMTK3Q96Q04 1460 aa9.14□□□□□ -0.95
CUX1-208ENST00000485792 MROH2AA6NES4 1674 aa9.13□□□□□ -0.95
CUX1-208ENST00000485792 DEPDC5O75140 1603 aa9.13□□□□□ -0.95
CUX1-208ENST00000485792 PROM2Q8N271 834 aa9.13□□□□□ -0.95
CUX1-208ENST00000485792 SETD1BQ9UPS6 1966 aaKnown RBP9.13□□□□□ -0.95
CUX1-208ENST00000485792 CEP152O94986 1710 aa9.13□□□□□ -0.95
CUX1-208ENST00000485792 ABCC5O15440 1437 aa9.13□□□□□ -0.95
CUX1-208ENST00000485792 HNRNPMP52272 730 aaKnown RBP eCLIP9.12□□□□□ -0.95
CUX1-208ENST00000485792 PLEKHH2Q8IVE3 1493 aa9.12□□□□□ -0.95
CUX1-208ENST00000485792 A2MP01023 1474 aa9.11□□□□□ -0.95
CUX1-208ENST00000485792 SHANK2Q9UPX8 1470 aa9.11□□□□□ -0.95
CUX1-208ENST00000485792 EIF2AK4Q9P2K8 1649 aaKnown RBP9.11□□□□□ -0.95
CUX1-208ENST00000485792 MIA2Q96PC5 1412 aa9.11□□□□□ -0.95
CUX1-208ENST00000485792 MYO3AQ8NEV4 1616 aa9.1□□□□□ -0.95
CUX1-208ENST00000485792 PRDM15P57071 1507 aaPredicted RBP9.1□□□□□ -0.95
CUX1-208ENST00000485792 VWDEQ8N2E2 1590 aa9.09□□□□□ -0.95
CUX1-208ENST00000485792 DAPK1P53355 1430 aa9.09□□□□□ -0.95
CUX1-208ENST00000485792 CHRDL2Q6WN34 429 aa9.09□□□□□ -0.95
CUX1-208ENST00000485792 ZNF142P52746 1687 aaPredicted RBP9.09□□□□□ -0.95
CUX1-208ENST00000485792 PREX1Q8TCU6 1659 aa9.09□□□□□ -0.95
CUX1-208ENST00000485792 STRCQ7RTU9 1775 aa9.09□□□□□ -0.95
CUX1-208ENST00000485792 RTEL1-TNFRSF6BF6WH68 1400 aa9.08□□□□□ -0.96
CUX1-208ENST00000485792 CFDP1Q9UEE9 299 aaPredicted RBP9.08□□□□□ -0.96
CUX1-208ENST00000485792 ZNF777Q9ULD5 760 aaPredicted RBP9.08□□□□□ -0.96
CUX1-208ENST00000485792 ADGRL2O95490 1459 aa9.08□□□□□ -0.96
CUX1-208ENST00000485792 CAMSAP1Q5T5Y3 1602 aa9.07□□□□□ -0.96
CUX1-208ENST00000485792 ABCC3O15438 1527 aa9.06□□□□□ -0.96
CUX1-208ENST00000485792 PITPNM1O00562 1244 aa9.06□□□□□ -0.96
CUX1-208ENST00000485792 ZC3H13Q5T200 1668 aaKnown RBP9.05□□□□□ -0.96
CUX1-208ENST00000485792 UNC13BO14795 1591 aa9.05□□□□□ -0.96
CUX1-208ENST00000485792 GCC2Q8IWJ2 1684 aa9.04□□□□□ -0.96
CUX1-208ENST00000485792 PPARGC1BQ86YN6 1023 aaKnown RBP9.04□□□□□ -0.96
CUX1-208ENST00000485792 SPDYE1Q8NFV5 336 aaPredicted RBP9.04□□□□□ -0.96
CUX1-208ENST00000485792 KDM5DQ9BY66 1539 aa9.04□□□□□ -0.96
CUX1-208ENST00000485792 SPAG9O60271 1321 aaKnown RBP9.04□□□□□ -0.96
CUX1-208ENST00000485792 RSPH4AQ5TD94 716 aa9.03□□□□□ -0.96
CUX1-208ENST00000485792 RRBP1Q9P2E9 1410 aaKnown RBP9.03□□□□□ -0.96
CUX1-208ENST00000485792 DUOX2Q9NRD8 1548 aa9.02□□□□□ -0.97
CUX1-208ENST00000485792 CLEC11AQ9Y240 323 aa9.02□□□□□ -0.97
CUX1-208ENST00000485792 SYNMO15061 1565 aa9.02□□□□□ -0.97
CUX1-208ENST00000485792 DHX29Q7Z478 1369 aaKnown RBP9.01□□□□□ -0.97
CUX1-208ENST00000485792 CEBPAP49715 358 aaPredicted RBP9.01□□□□□ -0.97
CUX1-208ENST00000485792 MLECQ14165 292 aa9.01□□□□□ -0.97
CUX1-208ENST00000485792 POTEHQ6S545 545 aa9.01□□□□□ -0.97
CUX1-208ENST00000485792 SPATA31D1Q6ZQQ2 1576 aa9.01□□□□□ -0.97
CUX1-208ENST00000485792 NEURL4Q96JN8 1562 aa9.01□□□□□ -0.97
CUX1-208ENST00000485792 NCOA1Q15788 1441 aa9□□□□□ -0.97
CUX1-208ENST00000485792 FAM135AQ9P2D6 1515 aa9□□□□□ -0.97
CUX1-208ENST00000485792 CEP170BQ9Y4F5 1589 aaPredicted RBP8.99□□□□□ -0.97
CUX1-208ENST00000485792 E9PCH4 1651 aa8.99□□□□□ -0.97
CUX1-208ENST00000485792 EFCAB6Q5THR3 1501 aa8.99□□□□□ -0.97
CUX1-208ENST00000485792 KIF15Q9NS87 1388 aa8.99□□□□□ -0.97
CUX1-208ENST00000485792 MYO5BQ9ULV0 1848 aa8.98□□□□□ -0.97
CUX1-208ENST00000485792 ERBINQ96RT1 1412 aa8.98□□□□□ -0.97
CUX1-208ENST00000485792 PZPP20742 1482 aa8.98□□□□□ -0.97
CUX1-208ENST00000485792 FBXO3Q9UK99 471 aa8.98□□□□□ -0.97
CUX1-208ENST00000485792 LMTK2Q8IWU2 1503 aa8.98□□□□□ -0.97
CUX1-208ENST00000485792 IQGAP3Q86VI3 1631 aa8.98□□□□□ -0.97
CUX1-208ENST00000485792 CFAP65Q6ZU64 1925 aaKnown RBP8.97□□□□□ -0.97
CUX1-208ENST00000485792 UBR1Q8IWV7 1749 aa8.97□□□□□ -0.97
CUX1-208ENST00000485792 UGGT1Q9NYU2 1555 aa8.97□□□□□ -0.97
CUX1-208ENST00000485792 ARID4BQ4LE39 1312 aaPredicted RBP8.97□□□□□ -0.97
CUX1-208ENST00000485792 POLR1AO95602 1720 aaPredicted RBP8.97□□□□□ -0.97
CUX1-208ENST00000485792 ERVK-7P63135 1459 aa8.96□□□□□ -0.97
CUX1-208ENST00000485792 PIK3C2BO00750 1634 aa8.96□□□□□ -0.98
CUX1-208ENST00000485792 TET3O43151 1660 aa8.96□□□□□ -0.98
CUX1-208ENST00000485792 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP8.96□□□□□ -0.98
CUX1-208ENST00000485792 NPATQ14207 1427 aa8.96□□□□□ -0.98
CUX1-208ENST00000485792 STRCP1A6NGW2 1772 aa8.95□□□□□ -0.98
CUX1-208ENST00000485792 HSPA2P54652 639 aa8.94□□□□□ -0.98
CUX1-208ENST00000485792 ZMYM3Q14202 1370 aa8.94□□□□□ -0.98
CUX1-208ENST00000485792 CNTLNQ9NXG0 1405 aa8.94□□□□□ -0.98
CUX1-208ENST00000485792 NAIPQ13075 1403 aa8.92□□□□□ -0.98
CUX1-208ENST00000485792 PIP4P2Q8N4L2 257 aa8.92□□□□□ -0.98
CUX1-208ENST00000485792 ROCK1Q13464 1354 aa8.91□□□□□ -0.98
CUX1-208ENST00000485792 PRR29P0C7W0 189 aa8.91□□□□□ -0.98
CUX1-208ENST00000485792 FXR2P51116 673 aaKnown RBP eCLIP8.91□□□□□ -0.98
CUX1-208ENST00000485792 FBXO31Q5XUX0 539 aaPredicted RBP8.91□□□□□ -0.98
CUX1-208ENST00000485792 STAG3Q9UJ98 1225 aa8.91□□□□□ -0.98
CUX1-208ENST00000485792 CHIC2Q9UKJ5 165 aa8.91□□□□□ -0.98
CUX1-208ENST00000485792 LTBP4Q8N2S1 1624 aa8.91□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 54.6 ms