RNA–Protein interactions for RNA: ENST00000471297.1

SMNDC1-204, Transcript of survival motor neuron domain containing 1, humanhuman

TSL 3

Gene SMNDC1, Length 823 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMNDC1-204ENST00000471297 AQRO60306 1485 aaKnown RBP eCLIP9.53□□□□□ -0.882e-6■■■■□ 25.8
SMNDC1-204ENST00000471297 CLIP1P30622 1438 aa9.53□□□□□ -0.88
SMNDC1-204ENST00000471297 SLAIN1Q8ND83 568 aa9.52□□□□□ -0.89
SMNDC1-204ENST00000471297 FHAD1B1AJZ9 1412 aa9.51□□□□□ -0.89
SMNDC1-204ENST00000471297 ZNF608Q9ULD9 1512 aaPredicted RBP9.51□□□□□ -0.89
SMNDC1-204ENST00000471297 OTUD5Q96G74 571 aa9.5□□□□□ -0.89
SMNDC1-204ENST00000471297 CAMK2BQ13554 666 aa9.49□□□□□ -0.89
SMNDC1-204ENST00000471297 P3H3Q8IVL6 736 aa9.49□□□□□ -0.89
SMNDC1-204ENST00000471297 KCNV2Q8TDN2 545 aa9.48□□□□□ -0.89
SMNDC1-204ENST00000471297 PBRM1Q86U86 1689 aa9.48□□□□□ -0.89
SMNDC1-204ENST00000471297 RANGAP1P46060 587 aaPredicted RBP9.46□□□□□ -0.9
SMNDC1-204ENST00000471297 MAGI1Q96QZ7 1491 aaPredicted RBP9.46□□□□□ -0.9
SMNDC1-204ENST00000471297 EIF4G3O43432 1585 aaKnown RBP9.46□□□□□ -0.9
SMNDC1-204ENST00000471297 ADAMTS12P58397 1594 aa9.46□□□□□ -0.9
SMNDC1-204ENST00000471297 ARHGEF1Q92888 912 aaKnown RBP9.45□□□□□ -0.9
SMNDC1-204ENST00000471297 VPS8Q8N3P4 1428 aa9.45□□□□□ -0.9
SMNDC1-204ENST00000471297 EMILIN3Q9NT22 766 aa9.44□□□□□ -0.9
SMNDC1-204ENST00000471297 SNAPC4Q5SXM2 1469 aa9.44□□□□□ -0.9
SMNDC1-204ENST00000471297 ARHGAP35Q9NRY4 1499 aa9.43□□□□□ -0.9
SMNDC1-204ENST00000471297 TRIM26Q12899 539 aaPredicted RBP9.43□□□□□ -0.9
SMNDC1-204ENST00000471297 CHMP7Q8WUX9 453 aaPredicted RBP9.42□□□□□ -0.9
SMNDC1-204ENST00000471297 SYNJ2O15056 1496 aa9.41□□□□□ -0.9
SMNDC1-204ENST00000471297 ARAP1Q96P48 1450 aa9.41□□□□□ -0.9
SMNDC1-204ENST00000471297 SLC34A2O95436 690 aa9.41□□□□□ -0.9
SMNDC1-204ENST00000471297 MAP3K9P80192 1104 aa9.41□□□□□ -0.9
SMNDC1-204ENST00000471297 UPF1Q92900 1129 aaKnown RBP eCLIP9.41□□□□□ -0.9
SMNDC1-204ENST00000471297 BCANQ96GW7 911 aa9.41□□□□□ -0.9
SMNDC1-204ENST00000471297 ARIH1Q9Y4X5 557 aaPredicted RBP9.41□□□□□ -0.9
SMNDC1-204ENST00000471297 EFCAB5A4FU69 1503 aa9.41□□□□□ -0.9
SMNDC1-204ENST00000471297 CTTNBP2Q8WZ74 1663 aa9.4□□□□□ -0.9
SMNDC1-204ENST00000471297 OXER1Q8TDS5 423 aa9.4□□□□□ -0.9
SMNDC1-204ENST00000471297 GRIN2AQ12879 1464 aa9.4□□□□□ -0.91
SMNDC1-204ENST00000471297 DPYSL4O14531 572 aa9.39□□□□□ -0.91
SMNDC1-204ENST00000471297 TBC1D12O60347 775 aa9.39□□□□□ -0.91
SMNDC1-204ENST00000471297 PTCD2Q8WV60 388 aaKnown RBP9.39□□□□□ -0.91
SMNDC1-204ENST00000471297 KIAA0586Q9BVV6 1533 aa9.38□□□□□ -0.91
SMNDC1-204ENST00000471297 NBR1Q14596 966 aa9.38□□□□□ -0.91
SMNDC1-204ENST00000471297 SNPHO15079 494 aa9.37□□□□□ -0.91
SMNDC1-204ENST00000471297 HOXB3P14651 431 aaPredicted RBP9.37□□□□□ -0.91
SMNDC1-204ENST00000471297 DOK7Q18PE1 504 aa9.37□□□□□ -0.91
SMNDC1-204ENST00000471297 PCGF6Q9BYE7 350 aa9.36□□□□□ -0.91
SMNDC1-204ENST00000471297 IQGAP2Q13576 1575 aa9.35□□□□□ -0.91
SMNDC1-204ENST00000471297 FMN1Q68DA7 1419 aa9.35□□□□□ -0.91
SMNDC1-204ENST00000471297 PCDHGA4Q9Y5G9 962 aa9.35□□□□□ -0.91
SMNDC1-204ENST00000471297 NUP160Q12769 1436 aa9.34□□□□□ -0.91
SMNDC1-204ENST00000471297 RIMBP2O15034 1052 aa9.34□□□□□ -0.91
SMNDC1-204ENST00000471297 ZNF710Q8N1W2 664 aa9.34□□□□□ -0.91
SMNDC1-204ENST00000471297 UGGT2Q9NYU1 1516 aa9.34□□□□□ -0.91
SMNDC1-204ENST00000471297 SAMD9Q5K651 1589 aa9.33□□□□□ -0.92
SMNDC1-204ENST00000471297 FHOD3Q2V2M9 1422 aa9.33□□□□□ -0.92
SMNDC1-204ENST00000471297 SPDYE16A6NNV3 312 aaPredicted RBP9.33□□□□□ -0.92
SMNDC1-204ENST00000471297 PPARGC1BQ86YN6 1023 aaKnown RBP9.33□□□□□ -0.92
SMNDC1-204ENST00000471297 MAP3K1Q13233 1512 aa9.32□□□□□ -0.92
SMNDC1-204ENST00000471297 SEMA3EO15041 775 aa9.32□□□□□ -0.92
SMNDC1-204ENST00000471297 ARSIQ5FYB1 569 aa9.32□□□□□ -0.92
SMNDC1-204ENST00000471297 JPH4Q96JJ6 628 aa9.32□□□□□ -0.92
SMNDC1-204ENST00000471297 EVI5O60447 810 aa9.31□□□□□ -0.92
SMNDC1-204ENST00000471297 GPR153Q6NV75 609 aa9.31□□□□□ -0.92
SMNDC1-204ENST00000471297 ZSWIM6Q9HCJ5 1215 aa9.31□□□□□ -0.92
SMNDC1-204ENST00000471297 CASKIN1Q8WXD9 1431 aa9.31□□□□□ -0.92
SMNDC1-204ENST00000471297 CEP170Q5SW79 1584 aa9.3□□□□□ -0.92
SMNDC1-204ENST00000471297 PDIA6Q15084 440 aa9.3□□□□□ -0.92
SMNDC1-204ENST00000471297 KHSRPQ92945 711 aaKnown RBP eCLIP9.3□□□□□ -0.92
SMNDC1-204ENST00000471297 ANO8Q9HCE9 1232 aaPredicted RBP9.29□□□□□ -0.92
SMNDC1-204ENST00000471297 CARMIL2Q6F5E8 1435 aa9.29□□□□□ -0.92
SMNDC1-204ENST00000471297 FYCO1Q9BQS8 1478 aa9.28□□□□□ -0.92
SMNDC1-204ENST00000471297 TESPA1A2RU30 521 aaPredicted RBP9.27□□□□□ -0.93
SMNDC1-204ENST00000471297 NUDT7P0C024 238 aa9.27□□□□□ -0.93
SMNDC1-204ENST00000471297 ATP1B4Q9UN42 357 aaPredicted RBP9.27□□□□□ -0.93
SMNDC1-204ENST00000471297 DISP1Q96F81 1524 aa9.26□□□□□ -0.93
SMNDC1-204ENST00000471297 KDM4FA0A1W2PPD8 638 aa9.26□□□□□ -0.93
SMNDC1-204ENST00000471297 KANK4Q5T7N3 995 aaPredicted RBP9.26□□□□□ -0.93
SMNDC1-204ENST00000471297 FAM163AQ96GL9 167 aaPredicted RBP9.26□□□□□ -0.93
SMNDC1-204ENST00000471297 KIAA0556O60303 1618 aa9.25□□□□□ -0.93
SMNDC1-204ENST00000471297 HOXB1P14653 301 aaPredicted RBP9.25□□□□□ -0.93
SMNDC1-204ENST00000471297 MLLT3P42568 568 aaPredicted RBP9.25□□□□□ -0.93
SMNDC1-204ENST00000471297 PTGER2P43116 358 aa9.25□□□□□ -0.93
SMNDC1-204ENST00000471297 TTBK1Q5TCY1 1321 aaPredicted RBP9.25□□□□□ -0.93
SMNDC1-204ENST00000471297 PCF11O94913 1555 aaKnown RBP9.24□□□□□ -0.93
SMNDC1-204ENST00000471297 TIAM1Q13009 1591 aa9.24□□□□□ -0.93
SMNDC1-204ENST00000471297 ZNF316A6NFI3 1004 aaPredicted RBP9.24□□□□□ -0.93
SMNDC1-204ENST00000471297 GRXCR2A6NFK2 248 aa9.24□□□□□ -0.93
SMNDC1-204ENST00000471297 SMYD5Q6GMV2 418 aa9.24□□□□□ -0.93
SMNDC1-204ENST00000471297 CHD1O14646 1710 aa9.23□□□□□ -0.93
SMNDC1-204ENST00000471297 DDX12PQ92771 950 aa9.23□□□□□ -0.93
SMNDC1-204ENST00000471297 LRRC9Q6ZRR7 1453 aa9.22□□□□□ -0.93
SMNDC1-204ENST00000471297 TULP1O00294 542 aaPredicted RBP9.22□□□□□ -0.93
SMNDC1-204ENST00000471297 ST18O60284 1047 aa9.22□□□□□ -0.93
SMNDC1-204ENST00000471297 PRG4Q92954 1404 aaPredicted RBP9.22□□□□□ -0.93
SMNDC1-204ENST00000471297 CCDC18Q5T9S5 1454 aa9.21□□□□□ -0.93
SMNDC1-204ENST00000471297 DHX30Q7L2E3 1194 aaKnown RBP eCLIP9.21□□□□□ -0.94
SMNDC1-204ENST00000471297 HECW1Q76N89 1606 aa9.2□□□□□ -0.94
SMNDC1-204ENST00000471297 LHX6Q9UPM6 363 aa9.2□□□□□ -0.94
SMNDC1-204ENST00000471297 CFAP43Q8NDM7 1665 aa9.2□□□□□ -0.94
SMNDC1-204ENST00000471297 CDK11AQ9UQ88 783 aaPredicted RBP9.19□□□□□ -0.94
SMNDC1-204ENST00000471297 PTPRGP23470 1445 aa9.19□□□□□ -0.94
SMNDC1-204ENST00000471297 SHROOM2Q13796 1616 aa9.19□□□□□ -0.94
SMNDC1-204ENST00000471297 PHF14O94880 888 aa9.18□□□□□ -0.94
SMNDC1-204ENST00000471297 EPRSP07814 1512 aaKnown RBP9.18□□□□□ -0.94
SMNDC1-204ENST00000471297 MTUS2Q5JR59 1369 aa9.18□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 57.8 ms