RNA–Protein interactions for RNA: ENST00000470531.5

CHD3-208, Transcript of chromodomain helicase DNA binding protein 3, human

TSL 2

Gene CHD3, Length 3,744 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHD3-208	ENST00000470531	KIF15	Q9NS87	1388 aa		13.81	□□□□□ -0.2
CHD3-208	ENST00000470531	FRAT2	O75474	233 aa	Predicted RBP	13.81	□□□□□ -0.2
CHD3-208	ENST00000470531	BACH2	Q9BYV9	841 aa		13.8	□□□□□ -0.2
CHD3-208	ENST00000470531	GGT6	Q6P531	493 aa		13.8	□□□□□ -0.2
CHD3-208	ENST00000470531	TRAK1	Q9UPV9	953 aa		13.8	□□□□□ -0.2
CHD3-208	ENST00000470531	SNAPC4	Q5SXM2	1469 aa		13.8	□□□□□ -0.2
CHD3-208	ENST00000470531	NFKBIB	Q15653	356 aa		13.79	□□□□□ -0.2
CHD3-208	ENST00000470531	PRG4	Q92954	1404 aa	Predicted RBP	13.79	□□□□□ -0.2
CHD3-208	ENST00000470531	POLA1	P09884	1462 aa	Predicted RBP	13.79	□□□□□ -0.2
CHD3-208	ENST00000470531	DHX29	Q7Z478	1369 aa	Known RBP	13.79	□□□□□ -0.2
CHD3-208	ENST00000470531	ARID3A	Q99856	593 aa		13.79	□□□□□ -0.2
CHD3-208	ENST00000470531	STAG3	Q9UJ98	1225 aa		13.79	□□□□□ -0.2
CHD3-208	ENST00000470531	NCL	P19338	710 aa	Known RBP	13.79	□□□□□ -0.2
CHD3-208	ENST00000470531	MFAP1	P55081	439 aa	Known RBP	13.78	□□□□□ -0.2
CHD3-208	ENST00000470531	ELL2	O00472	640 aa	Predicted RBP	13.78	□□□□□ -0.2
CHD3-208	ENST00000470531	MORC1	Q86VD1	984 aa		13.78	□□□□□ -0.2
CHD3-208	ENST00000470531	HMGXB3	Q12766	1538 aa		13.78	□□□□□ -0.2
CHD3-208	ENST00000470531	ANKRD30B	Q9BXX2	1392 aa		13.77	□□□□□ -0.2
CHD3-208	ENST00000470531	U2AF1L5	P0DN76	240 aa	Predicted RBP	13.77	□□□□□ -0.2
CHD3-208	ENST00000470531	U2AF1	Q01081	240 aa	Known RBP eCLIP	13.77	□□□□□ -0.2
CHD3-208	ENST00000470531	NAP1L5	Q96NT1	182 aa	Predicted RBP	13.77	□□□□□ -0.2
CHD3-208	ENST00000470531	RNF123	Q5XPI4	1314 aa		13.77	□□□□□ -0.2
CHD3-208	ENST00000470531	GSE1	Q14687	1217 aa		13.76	□□□□□ -0.21
CHD3-208	ENST00000470531	BECN1	Q14457	450 aa		13.75	□□□□□ -0.21
CHD3-208	ENST00000470531	EFCAB5	A4FU69	1503 aa		13.75	□□□□□ -0.21
CHD3-208	ENST00000470531	MAGI3	Q5TCQ9	1506 aa		13.75	□□□□□ -0.21
CHD3-208	ENST00000470531	KIF3B	O15066	747 aa		13.75	□□□□□ -0.21
CHD3-208	ENST00000470531	SUPT6H	Q7KZ85	1726 aa	Known RBP	13.74	□□□□□ -0.21
CHD3-208	ENST00000470531	SPATA31E1	Q6ZUB1	1445 aa		13.73	□□□□□ -0.21
CHD3-208	ENST00000470531	RPRD2	Q5VT52	1461 aa	Known RBP	13.72	□□□□□ -0.21
CHD3-208	ENST00000470531	PDE4C	Q08493	712 aa		13.72	□□□□□ -0.21
CHD3-208	ENST00000470531	ITPRIP	Q8IWB1	547 aa		13.71	□□□□□ -0.21
CHD3-208	ENST00000470531	ANKRD50	Q9ULJ7	1429 aa		13.71	□□□□□ -0.21
CHD3-208	ENST00000470531	FAM161A	Q3B820	660 aa		13.71	□□□□□ -0.21
CHD3-208	ENST00000470531	LRRIQ1	Q96JM4	1722 aa		13.71	□□□□□ -0.22
CHD3-208	ENST00000470531	TMEM132E	Q6IEE7	984 aa		13.71	□□□□□ -0.22
CHD3-208	ENST00000470531	CCDC144A	A2RUR9	1427 aa		13.7	□□□□□ -0.22
CHD3-208	ENST00000470531	ERCC6	Q03468	1493 aa		13.7	□□□□□ -0.22
CHD3-208	ENST00000470531	PRDM2	Q13029	1718 aa		13.7	□□□□□ -0.22
CHD3-208	ENST00000470531	TEX14	Q8IWB6	1497 aa		13.7	□□□□□ -0.22
CHD3-208	ENST00000470531	SRPK2	P78362	688 aa	Known RBP	13.7	□□□□□ -0.22
CHD3-208	ENST00000470531	ZMYND15	Q9H091	742 aa		13.7	□□□□□ -0.22
CHD3-208	ENST00000470531	USP35	Q9P2H5	1018 aa		13.7	□□□□□ -0.22
CHD3-208	ENST00000470531	TOPBP1	Q92547	1522 aa		13.7	□□□□□ -0.22
CHD3-208	ENST00000470531	GRIN2B	Q13224	1484 aa		13.69	□□□□□ -0.22
CHD3-208	ENST00000470531	AFAP1	Q8N556	730 aa		13.69	□□□□□ -0.22
CHD3-208	ENST00000470531	EHBP1L1	Q8N3D4	1523 aa		13.69	□□□□□ -0.22
CHD3-208	ENST00000470531	UGGT2	Q9NYU1	1516 aa		13.68	□□□□□ -0.22
CHD3-208	ENST00000470531	NUTM2F	A1L443	756 aa		13.68	□□□□□ -0.22
CHD3-208	ENST00000470531	CENPJ	Q9HC77	1338 aa	Predicted RBP	13.68	□□□□□ -0.22
CHD3-208	ENST00000470531	HECW1	Q76N89	1606 aa		13.68	□□□□□ -0.22
CHD3-208	ENST00000470531	PDE3B	Q13370	1112 aa		13.67	□□□□□ -0.22
CHD3-208	ENST00000470531	CFAP70	Q5T0N1	1121 aa		13.67	□□□□□ -0.22
CHD3-208	ENST00000470531	CDCA8	Q53HL2	280 aa		13.67	□□□□□ -0.22
CHD3-208	ENST00000470531	FOXD4L5	Q5VV16	416 aa	Predicted RBP	13.67	□□□□□ -0.22
CHD3-208	ENST00000470531	FOXD4L4	Q8WXT5	416 aa	Predicted RBP	13.67	□□□□□ -0.22
CHD3-208	ENST00000470531	BCORL1	Q5H9F3	1711 aa		13.66	□□□□□ -0.22
CHD3-208	ENST00000470531	CENPQ	Q7L2Z9	268 aa	Predicted RBP	13.66	□□□□□ -0.22
CHD3-208	ENST00000470531	PPP2R1A	P30153	589 aa		13.65	□□□□□ -0.22
CHD3-208	ENST00000470531	MLEC	Q14165	292 aa		13.65	□□□□□ -0.22
CHD3-208	ENST00000470531	SMC4	Q9NTJ3	1288 aa		13.65	□□□□□ -0.22
CHD3-208	ENST00000470531	WASHC2C	Q9Y4E1	1318 aa		13.65	□□□□□ -0.22
CHD3-208	ENST00000470531	CFAP53	Q96M91	514 aa		13.65	□□□□□ -0.22
CHD3-208	ENST00000470531	CTTNBP2	Q8WZ74	1663 aa		13.65	□□□□□ -0.22
CHD3-208	ENST00000470531	MS4A1	P11836	297 aa		13.65	□□□□□ -0.22
CHD3-208	ENST00000470531	MAPK8IP3	Q9UPT6	1336 aa		13.65	□□□□□ -0.23
CHD3-208	ENST00000470531	DAPK1	P53355	1430 aa		13.64	□□□□□ -0.23
CHD3-208	ENST00000470531	FOXD4L6	Q3SYB3	417 aa	Predicted RBP	13.64	□□□□□ -0.23
CHD3-208	ENST00000470531	FOXD4L3	Q6VB84	417 aa	Predicted RBP	13.64	□□□□□ -0.23
CHD3-208	ENST00000470531	ABCA10	Q8WWZ4	1543 aa		13.64	□□□□□ -0.23
CHD3-208	ENST00000470531	HSP90AB1	P08238	724 aa	Known RBP	13.64	□□□□□ -0.23
CHD3-208	ENST00000470531	TRIM44	Q96DX7	344 aa	Predicted RBP	13.64	□□□□□ -0.23
CHD3-208	ENST00000470531	ABCC5	O15440	1437 aa		13.63	□□□□□ -0.23
CHD3-208	ENST00000470531	SUGP2	Q8IX01	1082 aa	Known RBP eCLIP	13.63	□□□□□ -0.23
CHD3-208	ENST00000470531	POGK	Q9P215	609 aa		13.63	□□□□□ -0.23
CHD3-208	ENST00000470531	TSR2	Q969E8	191 aa	Known RBP	13.63	□□□□□ -0.23
CHD3-208	ENST00000470531	NOL8	Q76FK4	1167 aa	Known RBP	13.62	□□□□□ -0.23
CHD3-208	ENST00000470531	SLC12A5	Q9H2X9	1139 aa		13.62	□□□□□ -0.23
CHD3-208	ENST00000470531	TNN	Q9UQP3	1299 aa		13.62	□□□□□ -0.23
CHD3-208	ENST00000470531	THOC2	Q8NI27	1593 aa	Known RBP	13.61	□□□□□ -0.23
CHD3-208	ENST00000470531	EPRS	P07814	1512 aa	Known RBP	13.61	□□□□□ -0.23
CHD3-208	ENST00000470531	BRD4	O60885	1362 aa	Predicted RBP	13.61	□□□□□ -0.23
CHD3-208	ENST00000470531	MIA2	Q96PC5	1412 aa		13.61	□□□□□ -0.23
CHD3-208	ENST00000470531	GCC2	Q8IWJ2	1684 aa		13.61	□□□□□ -0.23
CHD3-208	ENST00000470531	KIAA1107	Q9UPP5	1409 aa		13.59	□□□□□ -0.23
CHD3-208	ENST00000470531	SPINK5	Q9NQ38	1064 aa	Predicted RBP	13.59	□□□□□ -0.23
CHD3-208	ENST00000470531	PLB1	Q6P1J6	1458 aa		13.59	□□□□□ -0.23
CHD3-208	ENST00000470531	NPM1	P06748	294 aa	Known RBP eCLIP	13.59	□□□□□ -0.23
CHD3-208	ENST00000470531	ANP32B	Q92688	251 aa	Known RBP	13.59	□□□□□ -0.23
CHD3-208	ENST00000470531	LNPK	Q9C0E8	428 aa		13.59	□□□□□ -0.23
CHD3-208	ENST00000470531	TAOK2	Q9UL54	1235 aa		13.59	□□□□□ -0.23
CHD3-208	ENST00000470531	LRPPRC	P42704	1394 aa	Known RBP	13.58	□□□□□ -0.23
CHD3-208	ENST00000470531	TCOF1	Q13428	1488 aa	Known RBP	13.58	□□□□□ -0.24
CHD3-208	ENST00000470531	PLCB2	Q00722	1185 aa		13.58	□□□□□ -0.24
CHD3-208	ENST00000470531	GGNBP2	Q9H3C7	697 aa		13.58	□□□□□ -0.24
CHD3-208	ENST00000470531	IGHD	P01880	384 aa		13.57	□□□□□ -0.24
CHD3-208	ENST00000470531	HSCB	Q8IWL3	235 aa		13.57	□□□□□ -0.24
CHD3-208	ENST00000470531	C1orf115	Q9H7X2	142 aa		13.57	□□□□□ -0.24
CHD3-208	ENST00000470531	SPAG9	O60271	1321 aa	Known RBP	13.57	□□□□□ -0.24
CHD3-208	ENST00000470531	MTHFS	P49914	203 aa		13.57	□□□□□ -0.24

Retrieved 100 of 20,778 RNA–protein pairs in 59.4 ms