RNA–Protein interactions for RNA: ENST00000470086.5

LSM2-210, Transcript of LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated, human

TSL 2

Gene LSM2, Length 713 nt, Biotype processed transcript, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LSM2-210	ENST00000470086	SHANK2	Q9UPX8	1470 aa		14.07	□□□□□ -0.16
LSM2-210	ENST00000470086	FAM9A	Q8IZU1	332 aa	Predicted RBP	14.07	□□□□□ -0.16
LSM2-210	ENST00000470086	CSRNP3	Q8WYN3	585 aa		14.07	□□□□□ -0.16
LSM2-210	ENST00000470086	SLC4A1AP	Q9BWU0	796 aa	Known RBP	14.06	□□□□□ -0.16
LSM2-210	ENST00000470086	RGS17	Q9UGC6	210 aa	Predicted RBP	14.05	□□□□□ -0.16
LSM2-210	ENST00000470086	DEPDC5	O75140	1603 aa		14.04	□□□□□ -0.16
LSM2-210	ENST00000470086	MYT1L	Q9UL68	1186 aa		14.04	□□□□□ -0.16
LSM2-210	ENST00000470086	CLIP1	P30622	1438 aa		14.02	□□□□□ -0.16
LSM2-210	ENST00000470086	A2M	P01023	1474 aa		14.01	□□□□□ -0.17
LSM2-210	ENST00000470086	FMN1	Q68DA7	1419 aa		14.01	□□□□□ -0.17
LSM2-210	ENST00000470086	SLC4A2	P04920	1241 aa		14.01	□□□□□ -0.17
LSM2-210	ENST00000470086	PKD2	Q13563	968 aa		14.01	□□□□□ -0.17
LSM2-210	ENST00000470086	LRRC7	Q96NW7	1537 aa		14	□□□□□ -0.17
LSM2-210	ENST00000470086	ESF1	Q9H501	851 aa	Known RBP	13.99	□□□□□ -0.17
LSM2-210	ENST00000470086	C1QBP	Q07021	282 aa	Known RBP	13.97	□□□□□ -0.17
LSM2-210	ENST00000470086	ATP1B4	Q9UN42	357 aa	Predicted RBP	13.97	□□□□□ -0.17
LSM2-210	ENST00000470086	EEA1	Q15075	1411 aa		13.96	□□□□□ -0.18
LSM2-210	ENST00000470086	UBR1	Q8IWV7	1749 aa		13.95	□□□□□ -0.18
LSM2-210	ENST00000470086	GPATCH8	Q9UKJ3	1502 aa	Known RBP	13.95	□□□□□ -0.18
LSM2-210	ENST00000470086	MED14	O60244	1454 aa		13.95	□□□□□ -0.18
LSM2-210	ENST00000470086	KDM5D	Q9BY66	1539 aa		13.95	□□□□□ -0.18
LSM2-210	ENST00000470086	CEP152	O94986	1710 aa		13.94	□□□□□ -0.18
LSM2-210	ENST00000470086	TIAM1	Q13009	1591 aa		13.94	□□□□□ -0.18
LSM2-210	ENST00000470086	ROBO1	Q9Y6N7	1651 aa		13.94	□□□□□ -0.18
LSM2-210	ENST00000470086	PZP	P20742	1482 aa		13.93	□□□□□ -0.18
LSM2-210	ENST00000470086	CCDC18	Q5T9S5	1454 aa		13.93	□□□□□ -0.18
LSM2-210	ENST00000470086	EHMT2	Q96KQ7	1210 aa		13.93	□□□□□ -0.18
LSM2-210	ENST00000470086	DROSHA	Q9NRR4	1374 aa	Known RBP eCLIP	13.93	□□□□□ -0.18	2e-10	■■□□□ 14.3
LSM2-210	ENST00000470086	UGGT1	Q9NYU2	1555 aa		13.92	□□□□□ -0.18
LSM2-210	ENST00000470086	CFAP65	Q6ZU64	1925 aa	Known RBP	13.92	□□□□□ -0.18
LSM2-210	ENST00000470086	NPHP4	O75161	1426 aa	Predicted RBP	13.92	□□□□□ -0.18
LSM2-210	ENST00000470086	TOM1	O60784	492 aa		13.91	□□□□□ -0.18
LSM2-210	ENST00000470086	POTEA	Q6S8J7	498 aa		13.91	□□□□□ -0.18
LSM2-210	ENST00000470086	TNR	Q92752	1358 aa		13.89	□□□□□ -0.19
LSM2-210	ENST00000470086	HNRNPM	P52272	730 aa	Known RBP eCLIP	13.89	□□□□□ -0.19
LSM2-210	ENST00000470086	FBXO31	Q5XUX0	539 aa	Predicted RBP	13.89	□□□□□ -0.19
LSM2-210	ENST00000470086		U3KPZ7	1027 aa	Predicted RBP	13.89	□□□□□ -0.19
LSM2-210	ENST00000470086	MROH1	Q8NDA8	1641 aa		13.89	□□□□□ -0.19
LSM2-210	ENST00000470086	CASKIN1	Q8WXD9	1431 aa		13.89	□□□□□ -0.19
LSM2-210	ENST00000470086	SPAG9	O60271	1321 aa	Known RBP	13.89	□□□□□ -0.19
LSM2-210	ENST00000470086	SRCAP	Q6ZRS2	3230 aa		13.88	□□□□□ -0.19
LSM2-210	ENST00000470086	CACNB1	Q02641	598 aa	Predicted RBP	13.88	□□□□□ -0.19
LSM2-210	ENST00000470086	GGT6	Q6P531	493 aa		13.88	□□□□□ -0.19
LSM2-210	ENST00000470086	MAP3K1	Q13233	1512 aa		13.87	□□□□□ -0.19
LSM2-210	ENST00000470086	MBD5	Q9P267	1494 aa		13.86	□□□□□ -0.19
LSM2-210	ENST00000470086	PHLPP1	O60346	1717 aa		13.85	□□□□□ -0.19
LSM2-210	ENST00000470086	ZNF777	Q9ULD5	760 aa	Predicted RBP	13.85	□□□□□ -0.19
LSM2-210	ENST00000470086	CDK11A	Q9UQ88	783 aa	Predicted RBP	13.85	□□□□□ -0.19
LSM2-210	ENST00000470086	FYCO1	Q9BQS8	1478 aa		13.85	□□□□□ -0.19
LSM2-210	ENST00000470086	FAM135A	Q9P2D6	1515 aa		13.85	□□□□□ -0.19
LSM2-210	ENST00000470086	KIAA1107	Q9UPP5	1409 aa		13.83	□□□□□ -0.2
LSM2-210	ENST00000470086	NLRP1	Q9C000	1473 aa		13.83	□□□□□ -0.2
LSM2-210	ENST00000470086	NCOA2	Q15596	1464 aa		13.81	□□□□□ -0.2
LSM2-210	ENST00000470086	ABCC3	O15438	1527 aa		13.81	□□□□□ -0.2
LSM2-210	ENST00000470086	LRP6	O75581	1613 aa		13.81	□□□□□ -0.2
LSM2-210	ENST00000470086	COL16A1	Q07092	1604 aa	Predicted RBP	13.81	□□□□□ -0.2
LSM2-210	ENST00000470086	PIK3C2B	O00750	1634 aa		13.8	□□□□□ -0.2
LSM2-210	ENST00000470086	ZNF644	Q9H582	1327 aa	Predicted RBP	13.8	□□□□□ -0.2
LSM2-210	ENST00000470086	PLEKHH2	Q8IVE3	1493 aa		13.8	□□□□□ -0.2
LSM2-210	ENST00000470086	MIA2	Q96PC5	1412 aa		13.79	□□□□□ -0.2
LSM2-210	ENST00000470086	ERVK-7	P63135	1459 aa		13.79	□□□□□ -0.2
LSM2-210	ENST00000470086	NWD1	Q149M9	1564 aa		13.76	□□□□□ -0.21
LSM2-210	ENST00000470086	ARHGAP23	Q9P227	1491 aa		13.76	□□□□□ -0.21
LSM2-210	ENST00000470086	SLIT1	O75093	1534 aa		13.75	□□□□□ -0.21
LSM2-210	ENST00000470086	SCAF11	Q99590	1463 aa	Known RBP	13.75	□□□□□ -0.21
LSM2-210	ENST00000470086	DHX29	Q7Z478	1369 aa	Known RBP	13.75	□□□□□ -0.21
LSM2-210	ENST00000470086	MYO5B	Q9ULV0	1848 aa		13.75	□□□□□ -0.21
LSM2-210	ENST00000470086	EIF2AK4	Q9P2K8	1649 aa	Known RBP	13.75	□□□□□ -0.21
LSM2-210	ENST00000470086	CAMSAP2	Q08AD1	1489 aa		13.74	□□□□□ -0.21
LSM2-210	ENST00000470086	ANKLE2	Q86XL3	938 aa		13.74	□□□□□ -0.21
LSM2-210	ENST00000470086	EHBP1L1	Q8N3D4	1523 aa		13.74	□□□□□ -0.21
LSM2-210	ENST00000470086	RTEL1-TNFRSF6B	F6WH68	1400 aa		13.73	□□□□□ -0.21
LSM2-210	ENST00000470086	SHPRH	Q149N8	1683 aa		13.73	□□□□□ -0.21
LSM2-210	ENST00000470086	CCDC141	Q6ZP82	1450 aa		13.73	□□□□□ -0.21
LSM2-210	ENST00000470086	KDM5A	P29375	1690 aa	Known RBP	13.72	□□□□□ -0.21
LSM2-210	ENST00000470086	UBTF	P17480	764 aa	Known RBP	13.72	□□□□□ -0.21
LSM2-210	ENST00000470086	FOXD4L1	Q9NU39	408 aa		13.72	□□□□□ -0.21
LSM2-210	ENST00000470086	FAM135B	Q49AJ0	1406 aa		13.72	□□□□□ -0.21
LSM2-210	ENST00000470086	CCNB3	Q8WWL7	1395 aa		13.71	□□□□□ -0.22
LSM2-210	ENST00000470086	ARHGEF5	Q12774	1597 aa		13.7	□□□□□ -0.22
LSM2-210	ENST00000470086	TET3	O43151	1660 aa		13.69	□□□□□ -0.22
LSM2-210	ENST00000470086	KIF3B	O15066	747 aa		13.69	□□□□□ -0.22
LSM2-210	ENST00000470086	CFDP1	Q9UEE9	299 aa	Predicted RBP	13.69	□□□□□ -0.22
LSM2-210	ENST00000470086	CHD2	O14647	1828 aa	Known RBP	13.69	□□□□□ -0.22
LSM2-210	ENST00000470086	DIP2A	Q14689	1571 aa		13.68	□□□□□ -0.22
LSM2-210	ENST00000470086	MAST1	Q9Y2H9	1570 aa		13.68	□□□□□ -0.22
LSM2-210	ENST00000470086	LTK	P29376	864 aa		13.67	□□□□□ -0.22
LSM2-210	ENST00000470086	THEMIS	Q8N1K5	641 aa	Predicted RBP	13.67	□□□□□ -0.22
LSM2-210	ENST00000470086	UPF1	Q92900	1129 aa	Known RBP eCLIP	13.67	□□□□□ -0.22
LSM2-210	ENST00000470086	CROCC2	H7BZ55	1655 aa		13.66	□□□□□ -0.22
LSM2-210	ENST00000470086	PRDM15	P57071	1507 aa	Predicted RBP	13.66	□□□□□ -0.22
LSM2-210	ENST00000470086	RBM33	Q96EV2	1170 aa	Known RBP	13.66	□□□□□ -0.22
LSM2-210	ENST00000470086	TMEM94	Q12767	1356 aa		13.66	□□□□□ -0.22
LSM2-210	ENST00000470086	ZBTB22	O15209	634 aa		13.65	□□□□□ -0.22
LSM2-210	ENST00000470086	MYCN	P04198	464 aa	Predicted RBP	13.65	□□□□□ -0.22
LSM2-210	ENST00000470086	EP400	Q96L91	3159 aa		13.64	□□□□□ -0.23
LSM2-210	ENST00000470086	LRRC9	Q6ZRR7	1453 aa		13.64	□□□□□ -0.23
LSM2-210	ENST00000470086	WASHC2C	Q9Y4E1	1318 aa		13.64	□□□□□ -0.23
LSM2-210	ENST00000470086	GCC2	Q8IWJ2	1684 aa		13.63	□□□□□ -0.23
LSM2-210	ENST00000470086	SIPA1L2	Q9P2F8	1722 aa	Predicted RBP	13.62	□□□□□ -0.23

Retrieved 100 of 20,778 RNA–protein pairs in 88.3 ms