RNA–Protein interactions for RNA: ENST00000470086.5

LSM2-210, Transcript of LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM2, Length 713 nt, Biotype processed transcript, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM2-210ENST00000470086 AEBP2Q6ZN18 517 aaPredicted RBP22.54■■□□□ 1.2
LSM2-210ENST00000470086 NISCHQ9Y2I1 1504 aa21.94■■□□□ 1.1
LSM2-210ENST00000470086 CHIC1Q5VXU3 224 aa21.8■■□□□ 1.08
LSM2-210ENST00000470086 ABCC9O60706 1549 aa20.53■□□□□ 0.88
LSM2-210ENST00000470086 CCDC180Q9P1Z9 1646 aa20.08■□□□□ 0.8
LSM2-210ENST00000470086 DNAJC5BQ9UF47 199 aa19.75■□□□□ 0.75
LSM2-210ENST00000470086 RB1CC1Q8TDY2 1594 aa19.24■□□□□ 0.67
LSM2-210ENST00000470086 UNC13AQ9UPW8 1703 aa19.22■□□□□ 0.67
LSM2-210ENST00000470086 SENP3Q9H4L4 574 aaPredicted RBP19.17■□□□□ 0.66
LSM2-210ENST00000470086 PHF23Q9BUL5 403 aaPredicted RBP19.13■□□□□ 0.65
LSM2-210ENST00000470086 NACADO15069 1562 aa18.93■□□□□ 0.62
LSM2-210ENST00000470086 BICRAQ9NZM4 1560 aa18.92■□□□□ 0.62
LSM2-210ENST00000470086 PABPN1Q86U42 306 aaKnown RBP eCLIP18.88■□□□□ 0.61
LSM2-210ENST00000470086 CC2D2AQ9P2K1 1620 aa18.6■□□□□ 0.57
LSM2-210ENST00000470086 CECR2Q9BXF3 1484 aa18.48■□□□□ 0.55
LSM2-210ENST00000470086 DCAF8L2P0C7V8 631 aa18.44■□□□□ 0.54
LSM2-210ENST00000470086 MYO15BQ96JP2 1530 aa18.44■□□□□ 0.54
LSM2-210ENST00000470086 EIF4G1Q04637 1599 aaKnown RBP18.39■□□□□ 0.53
LSM2-210ENST00000470086 DNAJC5Q9H3Z4 198 aa18.34■□□□□ 0.53
LSM2-210ENST00000470086 SHROOM4Q9ULL8 1493 aa18.31■□□□□ 0.52
LSM2-210ENST00000470086 SCRIBQ14160 1630 aa18.28■□□□□ 0.52
LSM2-210ENST00000470086 ZCCHC6Q5VYS8 1495 aaKnown RBP18.13■□□□□ 0.49
LSM2-210ENST00000470086 DCAF1Q9Y4B6 1507 aa18.03■□□□□ 0.48
LSM2-210ENST00000470086 CUX2O14529 1486 aa17.83■□□□□ 0.45
LSM2-210ENST00000470086 FOXD1Q16676 465 aa17.8■□□□□ 0.44
LSM2-210ENST00000470086 ERCC6Q03468 1493 aa17.63■□□□□ 0.41
LSM2-210ENST00000470086 THOC2Q8NI27 1593 aaKnown RBP17.61■□□□□ 0.41
LSM2-210ENST00000470086 PLPPR3Q6T4P5 718 aa17.58■□□□□ 0.4
LSM2-210ENST00000470086 NESP48681 1621 aa17.56■□□□□ 0.4
LSM2-210ENST00000470086 KIF21AQ7Z4S6 1674 aa17.48■□□□□ 0.39
LSM2-210ENST00000470086 NCAPD3P42695 1498 aa17.43■□□□□ 0.38
LSM2-210ENST00000470086 HMGXB3Q12766 1538 aa17.38■□□□□ 0.37
LSM2-210ENST00000470086 SMARCA2P51531 1590 aa17.38■□□□□ 0.37
LSM2-210ENST00000470086 ATAD2BQ9ULI0 1458 aa17.37■□□□□ 0.37
LSM2-210ENST00000470086 SMARCA4P51532 1647 aa17.36■□□□□ 0.37
LSM2-210ENST00000470086 TRIM41Q8WV44 630 aa17.34■□□□□ 0.37
LSM2-210ENST00000470086 LAMC3Q9Y6N6 1575 aa17.23■□□□□ 0.35
LSM2-210ENST00000470086 BAZ1AQ9NRL2 1556 aaPredicted RBP17.19■□□□□ 0.34
LSM2-210ENST00000470086 BAZ1BQ9UIG0 1483 aaKnown RBP17.15■□□□□ 0.34
LSM2-210ENST00000470086 PEG3Q9GZU2 1588 aa17.14■□□□□ 0.33
LSM2-210ENST00000470086 WDR62O43379 1518 aa17.08■□□□□ 0.32
LSM2-210ENST00000470086 MRC2Q9UBG0 1479 aa17.01■□□□□ 0.31
LSM2-210ENST00000470086 RIMBP3CA6NJZ7 1639 aa16.99■□□□□ 0.31
LSM2-210ENST00000470086 RIMBP3BA6NNM3 1639 aa16.99■□□□□ 0.31
LSM2-210ENST00000470086 RIMBP3Q9UFD9 1639 aa16.99■□□□□ 0.31
LSM2-210ENST00000470086 MROH2BQ7Z745 1585 aa16.98■□□□□ 0.31
LSM2-210ENST00000470086 PDS5BQ9NTI5 1447 aa16.95■□□□□ 0.3
LSM2-210ENST00000470086 PPP6R1Q9UPN7 881 aa16.94■□□□□ 0.3
LSM2-210ENST00000470086 ADRA2BP18089 450 aa16.88■□□□□ 0.29
LSM2-210ENST00000470086 WIZO95785 1651 aa16.85■□□□□ 0.29
LSM2-210ENST00000470086 CADPSQ9ULU8 1353 aa16.82■□□□□ 0.28
LSM2-210ENST00000470086 CEP164Q9UPV0 1460 aa16.81■□□□□ 0.28
LSM2-210ENST00000470086 ARHGEF11O15085 1522 aa16.77■□□□□ 0.28
LSM2-210ENST00000470086 URB2Q14146 1524 aaKnown RBP16.76■□□□□ 0.27
LSM2-210ENST00000470086 FANCD2Q9BXW9 1451 aa16.74■□□□□ 0.27
LSM2-210ENST00000470086 PRDM2Q13029 1718 aa16.73■□□□□ 0.27
LSM2-210ENST00000470086 PIAS4Q8N2W9 510 aaPredicted RBP16.7■□□□□ 0.26
LSM2-210ENST00000470086 CHD1O14646 1710 aa16.69■□□□□ 0.26
LSM2-210ENST00000470086 OSCARQ8IYS5 282 aa16.68■□□□□ 0.26
LSM2-210ENST00000470086 ZNF608Q9ULD9 1512 aaPredicted RBP16.65■□□□□ 0.26
LSM2-210ENST00000470086 EIF4G3O43432 1585 aaKnown RBP16.62■□□□□ 0.25
LSM2-210ENST00000470086 CFTRP13569 1480 aa16.61■□□□□ 0.25
LSM2-210ENST00000470086 ARAP1Q96P48 1450 aa16.6■□□□□ 0.25
LSM2-210ENST00000470086 MSH5O43196 834 aa16.54■□□□□ 0.24
LSM2-210ENST00000470086 TOP2AP11388 1531 aaKnown RBP16.46■□□□□ 0.23
LSM2-210ENST00000470086 TARBP1Q13395 1621 aaKnown RBP16.45■□□□□ 0.22
LSM2-210ENST00000470086 IFT140Q96RY7 1462 aa16.43■□□□□ 0.22
LSM2-210ENST00000470086 TOPBP1Q92547 1522 aa16.42■□□□□ 0.22
LSM2-210ENST00000470086 CYB5RLQ6IPT4 315 aa16.42■□□□□ 0.22
LSM2-210ENST00000470086 TRHP20396 242 aaPredicted RBP16.36■□□□□ 0.21
LSM2-210ENST00000470086 CLASP1Q7Z460 1538 aa16.35■□□□□ 0.21
LSM2-210ENST00000470086 DNMBPQ6XZF7 1577 aa16.34■□□□□ 0.21
LSM2-210ENST00000470086 AQRO60306 1485 aaKnown RBP eCLIP16.31■□□□□ 0.28e-8■■■■□ 24.4
LSM2-210ENST00000470086 RSF1Q96T23 1441 aaPredicted RBP16.31■□□□□ 0.2
LSM2-210ENST00000470086 POLA1P09884 1462 aaPredicted RBP16.22■□□□□ 0.19
LSM2-210ENST00000470086 CCDC88BA6NC98 1476 aa16.22■□□□□ 0.19
LSM2-210ENST00000470086 WDR97A6NE52 1622 aa16.2■□□□□ 0.18
LSM2-210ENST00000470086 SNAPC4Q5SXM2 1469 aa16.19■□□□□ 0.18
LSM2-210ENST00000470086 KIF13AQ9H1H9 1805 aa16.18■□□□□ 0.18
LSM2-210ENST00000470086 PBRM1Q86U86 1689 aa16.18■□□□□ 0.18
LSM2-210ENST00000470086 RAD54L2Q9Y4B4 1467 aa16.17■□□□□ 0.18
LSM2-210ENST00000470086 SYNJ1O43426 1573 aa16.15■□□□□ 0.18
LSM2-210ENST00000470086 ERCC6L2Q5T890 1561 aa16.15■□□□□ 0.18
LSM2-210ENST00000470086 FBLN2P98095 1184 aa16.11■□□□□ 0.17
LSM2-210ENST00000470086 ABCC8Q09428 1581 aa16.11■□□□□ 0.17
LSM2-210ENST00000470086 TDRD9Q8NDG6 1382 aaKnown RBP16.06■□□□□ 0.16
LSM2-210ENST00000470086 GAPVD1Q14C86 1478 aa16.05■□□□□ 0.16
LSM2-210ENST00000470086 FGD5Q6ZNL6 1462 aa16.03■□□□□ 0.16
LSM2-210ENST00000470086 MAGI1Q96QZ7 1491 aaPredicted RBP16.02■□□□□ 0.15
LSM2-210ENST00000470086 CUX1P39880 1505 aa15.99■□□□□ 0.15
LSM2-210ENST00000470086 SYNJ2O15056 1496 aa15.99■□□□□ 0.15
LSM2-210ENST00000470086 ABCA5Q8WWZ7 1642 aa15.98■□□□□ 0.15
LSM2-210ENST00000470086 SOGA1O94964 1423 aa15.96■□□□□ 0.15
LSM2-210ENST00000470086 GRIN2BQ13224 1484 aa15.94■□□□□ 0.14
LSM2-210ENST00000470086 CEP170Q5SW79 1584 aa15.94■□□□□ 0.14
LSM2-210ENST00000470086 SHROOM2Q13796 1616 aa15.94■□□□□ 0.14
LSM2-210ENST00000470086 ADAMTS12P58397 1594 aa15.88■□□□□ 0.13
LSM2-210ENST00000470086 CHMP7Q8WUX9 453 aaPredicted RBP15.85■□□□□ 0.13
LSM2-210ENST00000470086 DIP2BQ9P265 1576 aa15.83■□□□□ 0.12
LSM2-210ENST00000470086 ILDR1Q86SU0 546 aaPredicted RBP15.82■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 90.8 ms