RNA–Protein interactions for RNA: ENST00000469550.6

HDAC3-205, Transcript of histone deacetylase 3, humanhuman

TSL 1 (best)

Gene HDAC3, Length 1,952 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-205ENST00000469550 PPP6R1Q9UPN7 881 aa13.86□□□□□ -0.19
HDAC3-205ENST00000469550 IQSEC2Q5JU85 1478 aa13.86□□□□□ -0.19
HDAC3-205ENST00000469550 LTBP4Q8N2S1 1624 aa13.85□□□□□ -0.19
HDAC3-205ENST00000469550 CAMSAP1Q5T5Y3 1602 aa13.85□□□□□ -0.19
HDAC3-205ENST00000469550 PTPRKQ15262 1439 aa13.85□□□□□ -0.19
HDAC3-205ENST00000469550 PLA2R1Q13018 1463 aa13.84□□□□□ -0.19
HDAC3-205ENST00000469550 NCOA2Q15596 1464 aa13.83□□□□□ -0.2
HDAC3-205ENST00000469550 CEP170BQ9Y4F5 1589 aaPredicted RBP13.83□□□□□ -0.2
HDAC3-205ENST00000469550 ARHGEF5Q12774 1597 aa13.82□□□□□ -0.2
HDAC3-205ENST00000469550 CCDC141Q6ZP82 1450 aa13.82□□□□□ -0.2
HDAC3-205ENST00000469550 DHX57Q6P158 1386 aaKnown RBP13.82□□□□□ -0.2
HDAC3-205ENST00000469550 CAMSAP2Q08AD1 1489 aa13.82□□□□□ -0.2
HDAC3-205ENST00000469550 ZNF644Q9H582 1327 aaPredicted RBP13.82□□□□□ -0.2
HDAC3-205ENST00000469550 SUPT16HQ9Y5B9 1047 aaKnown RBP13.82□□□□□ -0.2
HDAC3-205ENST00000469550 DHX29Q7Z478 1369 aaKnown RBP13.81□□□□□ -0.2
HDAC3-205ENST00000469550 TCOF1Q13428 1488 aaKnown RBP13.8□□□□□ -0.2
HDAC3-205ENST00000469550 RSPH4AQ5TD94 716 aa13.79□□□□□ -0.2
HDAC3-205ENST00000469550 KDM5DQ9BY66 1539 aa13.78□□□□□ -0.2
HDAC3-205ENST00000469550 A2ML1A8K2U0 1454 aa13.78□□□□□ -0.2
HDAC3-205ENST00000469550 MAP3K1Q13233 1512 aa13.77□□□□□ -0.2
HDAC3-205ENST00000469550 MAST1Q9Y2H9 1570 aa13.77□□□□□ -0.2
HDAC3-205ENST00000469550 PKD2Q13563 968 aa13.76□□□□□ -0.21
HDAC3-205ENST00000469550 GGT6Q6P531 493 aa13.76□□□□□ -0.21
HDAC3-205ENST00000469550 DNMT1P26358 1616 aaKnown RBP13.76□□□□□ -0.21
HDAC3-205ENST00000469550 PZPP20742 1482 aa13.76□□□□□ -0.21
HDAC3-205ENST00000469550 LRRC9Q6ZRR7 1453 aa13.76□□□□□ -0.21
HDAC3-205ENST00000469550 RNF17Q9BXT8 1623 aaKnown RBP13.75□□□□□ -0.21
HDAC3-205ENST00000469550 POLR1AO95602 1720 aaPredicted RBP13.74□□□□□ -0.21
HDAC3-205ENST00000469550 EIF2AK4Q9P2K8 1649 aaKnown RBP13.73□□□□□ -0.21
HDAC3-205ENST00000469550 ZC3H13Q5T200 1668 aaKnown RBP13.73□□□□□ -0.21
HDAC3-205ENST00000469550 RRBP1Q9P2E9 1410 aaKnown RBP13.72□□□□□ -0.21
HDAC3-205ENST00000469550 NCKAP5LQ9HCH0 1330 aa13.72□□□□□ -0.21
HDAC3-205ENST00000469550 TNRQ92752 1358 aa13.71□□□□□ -0.21
HDAC3-205ENST00000469550 NEURL4Q96JN8 1562 aa13.71□□□□□ -0.22
HDAC3-205ENST00000469550 MIA2Q96PC5 1412 aa13.7□□□□□ -0.22
HDAC3-205ENST00000469550 KIF3BO15066 747 aa13.7□□□□□ -0.22
HDAC3-205ENST00000469550 TSHZ2Q9NRE2 1034 aa13.7□□□□□ -0.22
HDAC3-205ENST00000469550 NLRP1Q9C000 1473 aa13.69□□□□□ -0.22
HDAC3-205ENST00000469550 MYOM3Q5VTT5 1437 aa13.68□□□□□ -0.22
HDAC3-205ENST00000469550 ABCC3O15438 1527 aa13.68□□□□□ -0.22
HDAC3-205ENST00000469550 DEPDC5O75140 1603 aa13.68□□□□□ -0.22
HDAC3-205ENST00000469550 MROH1Q8NDA8 1641 aa13.68□□□□□ -0.22
HDAC3-205ENST00000469550 ANP32EQ9BTT0 268 aa13.67□□□□□ -0.22
HDAC3-205ENST00000469550 ZNF335Q9H4Z2 1342 aaPredicted RBP13.67□□□□□ -0.22
HDAC3-205ENST00000469550 SPATA31D1Q6ZQQ2 1576 aa13.67□□□□□ -0.22
HDAC3-205ENST00000469550 TSPY4P0CV99 314 aa13.67□□□□□ -0.22
HDAC3-205ENST00000469550 TSPY10P0CW01 314 aa13.67□□□□□ -0.22
HDAC3-205ENST00000469550 CROCC2H7BZ55 1655 aa13.66□□□□□ -0.22
HDAC3-205ENST00000469550 CPS1P31327 1500 aa13.66□□□□□ -0.22
HDAC3-205ENST00000469550 WASHC2CQ9Y4E1 1318 aa13.65□□□□□ -0.22
HDAC3-205ENST00000469550 MED14O60244 1454 aa13.65□□□□□ -0.22
HDAC3-205ENST00000469550 SHANK2Q9UPX8 1470 aa13.64□□□□□ -0.23
HDAC3-205ENST00000469550 FBXO31Q5XUX0 539 aaPredicted RBP13.64□□□□□ -0.23
HDAC3-205ENST00000469550 UGGT1Q9NYU2 1555 aa13.64□□□□□ -0.23
HDAC3-205ENST00000469550 DUOX2Q9NRD8 1548 aa13.64□□□□□ -0.23
HDAC3-205ENST00000469550 VWDEQ8N2E2 1590 aa13.62□□□□□ -0.23
HDAC3-205ENST00000469550 CEP152O94986 1710 aa13.62□□□□□ -0.23
HDAC3-205ENST00000469550 ERVK-7P63135 1459 aa13.62□□□□□ -0.23
HDAC3-205ENST00000469550 KANK4Q5T7N3 995 aaPredicted RBP13.62□□□□□ -0.23
HDAC3-205ENST00000469550 PRDM15P57071 1507 aaPredicted RBP13.62□□□□□ -0.23
HDAC3-205ENST00000469550 DISP3Q9P2K9 1392 aa13.61□□□□□ -0.23
HDAC3-205ENST00000469550 IQGAP1P46940 1657 aa13.61□□□□□ -0.23
HDAC3-205ENST00000469550 THEMISQ8N1K5 641 aaPredicted RBP13.6□□□□□ -0.23
HDAC3-205ENST00000469550 PTPN23Q9H3S7 1636 aa13.6□□□□□ -0.23
HDAC3-205ENST00000469550 ERBINQ96RT1 1412 aa13.6□□□□□ -0.23
HDAC3-205ENST00000469550 NPHP4O75161 1426 aaPredicted RBP13.59□□□□□ -0.23
HDAC3-205ENST00000469550 UBR1Q8IWV7 1749 aa13.59□□□□□ -0.23
HDAC3-205ENST00000469550 ANKLE2Q86XL3 938 aa13.59□□□□□ -0.23
HDAC3-205ENST00000469550 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP13.59□□□□□ -0.23
HDAC3-205ENST00000469550 ARHGAP31Q2M1Z3 1444 aa13.59□□□□□ -0.23
HDAC3-205ENST00000469550 UBAP1LF5GYI3 381 aa13.58□□□□□ -0.24
HDAC3-205ENST00000469550 ABCC5O15440 1437 aa13.57□□□□□ -0.24
HDAC3-205ENST00000469550 SYNMO15061 1565 aa13.56□□□□□ -0.24
HDAC3-205ENST00000469550 KIF15Q9NS87 1388 aa13.56□□□□□ -0.24
HDAC3-205ENST00000469550 DAPK1P53355 1430 aa13.55□□□□□ -0.24
HDAC3-205ENST00000469550 ARHGAP23Q9P227 1491 aa13.55□□□□□ -0.24
HDAC3-205ENST00000469550 KDM5AP29375 1690 aaKnown RBP13.55□□□□□ -0.24
HDAC3-205ENST00000469550 SLIT1O75093 1534 aa13.55□□□□□ -0.24
HDAC3-205ENST00000469550 STRCP1A6NGW2 1772 aa13.55□□□□□ -0.24
HDAC3-205ENST00000469550 ILDR2Q71H61 639 aa13.54□□□□□ -0.24
HDAC3-205ENST00000469550 FGD6Q6ZV73 1430 aa13.54□□□□□ -0.24
HDAC3-205ENST00000469550 LMTK2Q8IWU2 1503 aa13.54□□□□□ -0.24
HDAC3-205ENST00000469550 ALKQ9UM73 1620 aa13.53□□□□□ -0.24
HDAC3-205ENST00000469550 TIMELESSQ9UNS1 1208 aa13.52□□□□□ -0.24
HDAC3-205ENST00000469550 SCAF11Q99590 1463 aaKnown RBP13.52□□□□□ -0.24
HDAC3-205ENST00000469550 SOCS7O14512 581 aa13.52□□□□□ -0.25
HDAC3-205ENST00000469550 CFAP65Q6ZU64 1925 aaKnown RBP13.52□□□□□ -0.25
HDAC3-205ENST00000469550 TOM1O60784 492 aa13.51□□□□□ -0.25
HDAC3-205ENST00000469550 RAB3GAP2Q9H2M9 1393 aa13.5□□□□□ -0.25
HDAC3-205ENST00000469550 PIK3C2BO00750 1634 aa13.5□□□□□ -0.25
HDAC3-205ENST00000469550 ADGRL2O95490 1459 aa13.5□□□□□ -0.25
HDAC3-205ENST00000469550 LRRC7Q96NW7 1537 aa13.5□□□□□ -0.25
HDAC3-205ENST00000469550 ANKRD30AQ9BXX3 1397 aa13.49□□□□□ -0.25
HDAC3-205ENST00000469550 KANK1Q14678 1352 aa13.48□□□□□ -0.25
HDAC3-205ENST00000469550 CCER2I3L3R5 266 aa13.47□□□□□ -0.25
HDAC3-205ENST00000469550 MED1Q15648 1581 aaPredicted RBP13.47□□□□□ -0.25
HDAC3-205ENST00000469550 EFCAB6Q5THR3 1501 aa13.47□□□□□ -0.25
HDAC3-205ENST00000469550 SETD5Q9C0A6 1442 aa13.47□□□□□ -0.25
HDAC3-205ENST00000469550 RRP7BPQ9NSQ0 103 aa13.47□□□□□ -0.25
HDAC3-205ENST00000469550 XIRP1Q702N8 1843 aaKnown RBP13.45□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 56.3 ms