RNA–Protein interactions for RNA: ENST00000469550.6

HDAC3-205, Transcript of histone deacetylase 3, humanhuman

TSL 1 (best)

Gene HDAC3, Length 1,952 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-205ENST00000469550 NISCHQ9Y2I1 1504 aa21.79■■□□□ 1.08
HDAC3-205ENST00000469550 CCDC180Q9P1Z9 1646 aa19.66■□□□□ 0.74
HDAC3-205ENST00000469550 ABCC9O60706 1549 aa19.51■□□□□ 0.71
HDAC3-205ENST00000469550 RB1CC1Q8TDY2 1594 aa18.66■□□□□ 0.58
HDAC3-205ENST00000469550 NACADO15069 1562 aa18.55■□□□□ 0.56
HDAC3-205ENST00000469550 MYO15BQ96JP2 1530 aa18.34■□□□□ 0.53
HDAC3-205ENST00000469550 DNAJC5BQ9UF47 199 aa18.29■□□□□ 0.52
HDAC3-205ENST00000469550 UNC13AQ9UPW8 1703 aa18.26■□□□□ 0.51
HDAC3-205ENST00000469550 DCAF8L2P0C7V8 631 aa18.17■□□□□ 0.5
HDAC3-205ENST00000469550 BICRAQ9NZM4 1560 aa18.12■□□□□ 0.49
HDAC3-205ENST00000469550 PABPN1Q86U42 306 aaKnown RBP eCLIP18.09■□□□□ 0.49
HDAC3-205ENST00000469550 DCAF1Q9Y4B6 1507 aa18.09■□□□□ 0.49
HDAC3-205ENST00000469550 ZCCHC6Q5VYS8 1495 aaKnown RBP18.08■□□□□ 0.48
HDAC3-205ENST00000469550 SHROOM4Q9ULL8 1493 aa17.96■□□□□ 0.47
HDAC3-205ENST00000469550 SCRIBQ14160 1630 aa17.78■□□□□ 0.44
HDAC3-205ENST00000469550 CC2D2AQ9P2K1 1620 aa17.69■□□□□ 0.42
HDAC3-205ENST00000469550 EIF4G1Q04637 1599 aaKnown RBP17.66■□□□□ 0.42
HDAC3-205ENST00000469550 CECR2Q9BXF3 1484 aa17.61■□□□□ 0.41
HDAC3-205ENST00000469550 NCAPD3P42695 1498 aa17.1■□□□□ 0.33
HDAC3-205ENST00000469550 ATAD2BQ9ULI0 1458 aa17.02■□□□□ 0.32
HDAC3-205ENST00000469550 SMARCA4P51532 1647 aa17.02■□□□□ 0.32
HDAC3-205ENST00000469550 HMGXB3Q12766 1538 aa17.01■□□□□ 0.31
HDAC3-205ENST00000469550 SMARCA2P51531 1590 aa17■□□□□ 0.31
HDAC3-205ENST00000469550 BAZ1AQ9NRL2 1556 aaPredicted RBP16.93■□□□□ 0.3
HDAC3-205ENST00000469550 CUX2O14529 1486 aa16.93■□□□□ 0.3
HDAC3-205ENST00000469550 PEG3Q9GZU2 1588 aa16.91■□□□□ 0.3
HDAC3-205ENST00000469550 DNAJC5Q9H3Z4 198 aa16.86■□□□□ 0.29
HDAC3-205ENST00000469550 ERCC6Q03468 1493 aa16.85■□□□□ 0.29
HDAC3-205ENST00000469550 BAZ1BQ9UIG0 1483 aaKnown RBP16.84■□□□□ 0.29
HDAC3-205ENST00000469550 MROH2BQ7Z745 1585 aa16.76■□□□□ 0.27
HDAC3-205ENST00000469550 NESP48681 1621 aa16.76■□□□□ 0.27
HDAC3-205ENST00000469550 LAMC3Q9Y6N6 1575 aa16.73■□□□□ 0.27
HDAC3-205ENST00000469550 THOC2Q8NI27 1593 aaKnown RBP16.69■□□□□ 0.26
HDAC3-205ENST00000469550 KIF21AQ7Z4S6 1674 aa16.61■□□□□ 0.25
HDAC3-205ENST00000469550 PDS5BQ9NTI5 1447 aa16.58■□□□□ 0.25
HDAC3-205ENST00000469550 WIZO95785 1651 aa16.56■□□□□ 0.24
HDAC3-205ENST00000469550 CADPSQ9ULU8 1353 aa16.53■□□□□ 0.24
HDAC3-205ENST00000469550 MRC2Q9UBG0 1479 aa16.46■□□□□ 0.23
HDAC3-205ENST00000469550 WDR62O43379 1518 aa16.46■□□□□ 0.22
HDAC3-205ENST00000469550 RSF1Q96T23 1441 aaPredicted RBP16.4■□□□□ 0.22
HDAC3-205ENST00000469550 TOP2AP11388 1531 aaKnown RBP16.4■□□□□ 0.22
HDAC3-205ENST00000469550 CEP164Q9UPV0 1460 aa16.38■□□□□ 0.21
HDAC3-205ENST00000469550 CFTRP13569 1480 aa16.37■□□□□ 0.21
HDAC3-205ENST00000469550 FANCD2Q9BXW9 1451 aa16.34■□□□□ 0.21
HDAC3-205ENST00000469550 PRDM2Q13029 1718 aa16.29■□□□□ 0.2
HDAC3-205ENST00000469550 URB2Q14146 1524 aaKnown RBP16.22■□□□□ 0.19
HDAC3-205ENST00000469550 CCDC88BA6NC98 1476 aa16.16■□□□□ 0.18
HDAC3-205ENST00000469550 IFT140Q96RY7 1462 aa16.07■□□□□ 0.16
HDAC3-205ENST00000469550 ABCC8Q09428 1581 aa16.05■□□□□ 0.16
HDAC3-205ENST00000469550 TOPBP1Q92547 1522 aa16.05■□□□□ 0.16
HDAC3-205ENST00000469550 OSCARQ8IYS5 282 aa16.04■□□□□ 0.16
HDAC3-205ENST00000469550 DNMBPQ6XZF7 1577 aa16.02■□□□□ 0.15
HDAC3-205ENST00000469550 ZNF608Q9ULD9 1512 aaPredicted RBP15.99■□□□□ 0.15
HDAC3-205ENST00000469550 TRIM41Q8WV44 630 aa15.99■□□□□ 0.15
HDAC3-205ENST00000469550 EIF4G3O43432 1585 aaKnown RBP15.96■□□□□ 0.15
HDAC3-205ENST00000469550 TARBP1Q13395 1621 aaKnown RBP15.95■□□□□ 0.14
HDAC3-205ENST00000469550 HRCP23327 699 aa15.91■□□□□ 0.14
HDAC3-205ENST00000469550 RIMBP3CA6NJZ7 1639 aa15.9■□□□□ 0.14
HDAC3-205ENST00000469550 RIMBP3BA6NNM3 1639 aa15.9■□□□□ 0.14
HDAC3-205ENST00000469550 RIMBP3Q9UFD9 1639 aa15.9■□□□□ 0.14
HDAC3-205ENST00000469550 POLA1P09884 1462 aaPredicted RBP15.88■□□□□ 0.13
HDAC3-205ENST00000469550 SUPT5HO00267 1087 aaKnown RBP15.87■□□□□ 0.13
HDAC3-205ENST00000469550 WDR97A6NE52 1622 aa15.85■□□□□ 0.13
HDAC3-205ENST00000469550 CHD1O14646 1710 aa15.85■□□□□ 0.13
HDAC3-205ENST00000469550 ARHGEF11O15085 1522 aa15.84■□□□□ 0.13
HDAC3-205ENST00000469550 AQRO60306 1485 aaKnown RBP eCLIP15.82■□□□□ 0.126e-7■■■■□ 23.8
HDAC3-205ENST00000469550 RAD54L2Q9Y4B4 1467 aa15.78■□□□□ 0.12
HDAC3-205ENST00000469550 SOGA1O94964 1423 aa15.77■□□□□ 0.11
HDAC3-205ENST00000469550 CUX1P39880 1505 aa15.77■□□□□ 0.11
HDAC3-205ENST00000469550 FGD5Q6ZNL6 1462 aa15.76■□□□□ 0.11
HDAC3-205ENST00000469550 CHIC1Q5VXU3 224 aa15.72■□□□□ 0.11
HDAC3-205ENST00000469550 MAGI1Q96QZ7 1491 aaPredicted RBP15.71■□□□□ 0.11
HDAC3-205ENST00000469550 TDRD9Q8NDG6 1382 aaKnown RBP15.7■□□□□ 0.1
HDAC3-205ENST00000469550 SNAPC4Q5SXM2 1469 aa15.7■□□□□ 0.1
HDAC3-205ENST00000469550 CLASP1Q7Z460 1538 aa15.7■□□□□ 0.1
HDAC3-205ENST00000469550 ARAP1Q96P48 1450 aa15.69■□□□□ 0.1
HDAC3-205ENST00000469550 GRIN2BQ13224 1484 aa15.68■□□□□ 0.1
HDAC3-205ENST00000469550 SYNJ1O43426 1573 aa15.66■□□□□ 0.1
HDAC3-205ENST00000469550 PBRM1Q86U86 1689 aa15.65■□□□□ 0.1
HDAC3-205ENST00000469550 SYNJ2O15056 1496 aa15.63■□□□□ 0.09
HDAC3-205ENST00000469550 FBLN2P98095 1184 aa15.63■□□□□ 0.09
HDAC3-205ENST00000469550 ABCA5Q8WWZ7 1642 aa15.63■□□□□ 0.09
HDAC3-205ENST00000469550 ABCA10Q8WWZ4 1543 aa15.63■□□□□ 0.09
HDAC3-205ENST00000469550 CYB5RLQ6IPT4 315 aa15.61■□□□□ 0.09
HDAC3-205ENST00000469550 GAPVD1Q14C86 1478 aa15.6■□□□□ 0.09
HDAC3-205ENST00000469550 CHMP7Q8WUX9 453 aaPredicted RBP15.57■□□□□ 0.08
HDAC3-205ENST00000469550 BIVM-ERCC5R4GMW8 1640 aa15.56■□□□□ 0.08
HDAC3-205ENST00000469550 PCGF6Q9BYE7 350 aa15.55■□□□□ 0.08
HDAC3-205ENST00000469550 TOP2BQ02880 1626 aa15.54■□□□□ 0.08
HDAC3-205ENST00000469550 WRNQ14191 1432 aaPredicted RBP eCLIP15.51■□□□□ 0.07
HDAC3-205ENST00000469550 ADAMTS12P58397 1594 aa15.51■□□□□ 0.07
HDAC3-205ENST00000469550 GRIN2AQ12879 1464 aa15.48■□□□□ 0.07
HDAC3-205ENST00000469550 NUP160Q12769 1436 aa15.45■□□□□ 0.06
HDAC3-205ENST00000469550 ERICH3Q5RHP9 1530 aa15.44■□□□□ 0.06
HDAC3-205ENST00000469550 CEP170Q5SW79 1584 aa15.43■□□□□ 0.06
HDAC3-205ENST00000469550 SHROOM2Q13796 1616 aa15.42■□□□□ 0.06
HDAC3-205ENST00000469550 FHAD1B1AJZ9 1412 aa15.42■□□□□ 0.06
HDAC3-205ENST00000469550 TRHP20396 242 aaPredicted RBP15.42■□□□□ 0.06
HDAC3-205ENST00000469550 ERCC6L2Q5T890 1561 aa15.38■□□□□ 0.05
HDAC3-205ENST00000469550 PPARGC1BQ86YN6 1023 aaKnown RBP15.36■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms