RNA–Protein interactions for RNA: ENST00000460289.5

PTPN4-208, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 577 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-208ENST00000460289 DUOX2Q9NRD8 1548 aa35.47■■■■□ 3.27
PTPN4-208ENST00000460289 RRP7BPQ9NSQ0 103 aa35.47■■■■□ 3.27
PTPN4-208ENST00000460289 KIF15Q9NS87 1388 aa35.46■■■■□ 3.27
PTPN4-208ENST00000460289 CROCC2H7BZ55 1655 aa35.46■■■■□ 3.27
PTPN4-208ENST00000460289 PTPRKQ15262 1439 aa35.45■■■■□ 3.27
PTPN4-208ENST00000460289 KDM5DQ9BY66 1539 aa35.44■■■■□ 3.26
PTPN4-208ENST00000460289 CHIC2Q9UKJ5 165 aa35.43■■■■□ 3.26
PTPN4-208ENST00000460289 EIF2AK4Q9P2K8 1649 aaKnown RBP35.43■■■■□ 3.26
PTPN4-208ENST00000460289 ANKRD30AQ9BXX3 1397 aa35.42■■■■□ 3.26
PTPN4-208ENST00000460289 RNF17Q9BXT8 1623 aaKnown RBP35.38■■■■□ 3.25
PTPN4-208ENST00000460289 ERBINQ96RT1 1412 aa35.37■■■■□ 3.25
PTPN4-208ENST00000460289 PPARGC1BQ86YN6 1023 aaKnown RBP35.36■■■■□ 3.25
PTPN4-208ENST00000460289 DMRT2Q9Y5R5 561 aa35.36■■■■□ 3.25
PTPN4-208ENST00000460289 NCOA1Q15788 1441 aa35.34■■■■□ 3.25
PTPN4-208ENST00000460289 PZPP20742 1482 aa35.33■■■■□ 3.25
PTPN4-208ENST00000460289 FBXO31Q5XUX0 539 aaPredicted RBP35.32■■■■□ 3.24
PTPN4-208ENST00000460289 ADGRL2O95490 1459 aa35.28■■■■□ 3.24
PTPN4-208ENST00000460289 ABCC3O15438 1527 aa35.27■■■■□ 3.24
PTPN4-208ENST00000460289 TNRQ92752 1358 aa35.26■■■■□ 3.24
PTPN4-208ENST00000460289 ZC3H13Q5T200 1668 aaKnown RBP35.26■■■■□ 3.23
PTPN4-208ENST00000460289 MYO3AQ8NEV4 1616 aa35.25■■■■□ 3.23
PTPN4-208ENST00000460289 MROH1Q8NDA8 1641 aa35.24■■■■□ 3.23
PTPN4-208ENST00000460289 STRCQ7RTU9 1775 aa35.23■■■■□ 3.23
PTPN4-208ENST00000460289 GRWD1Q9BQ67 446 aaKnown RBP eCLIP35.23■■■■□ 3.239e-7■□□□□ 10.8
PTPN4-208ENST00000460289 CEP170BQ9Y4F5 1589 aaPredicted RBP35.21■■■■□ 3.23
PTPN4-208ENST00000460289 KANK1Q14678 1352 aa35.21■■■■□ 3.23
PTPN4-208ENST00000460289 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP35.2■■■■□ 3.23
PTPN4-208ENST00000460289 ZNF142P52746 1687 aaPredicted RBP35.2■■■■□ 3.23
PTPN4-208ENST00000460289 A2ML1A8K2U0 1454 aa35.19■■■■□ 3.22
PTPN4-208ENST00000460289 PRDM15P57071 1507 aaPredicted RBP35.19■■■■□ 3.22
PTPN4-208ENST00000460289 CAMSAP1Q5T5Y3 1602 aa35.19■■■■□ 3.22
PTPN4-208ENST00000460289 PTPRTO14522 1441 aa35.16■■■■□ 3.22
PTPN4-208ENST00000460289 ANKRD50Q9ULJ7 1429 aa35.14■■■■□ 3.22
PTPN4-208ENST00000460289 DEPDC5O75140 1603 aa35.14■■■■□ 3.22
PTPN4-208ENST00000460289 PKD2Q13563 968 aa35.13■■■■□ 3.21
PTPN4-208ENST00000460289 PLA2R1Q13018 1463 aa35.13■■■■□ 3.21
PTPN4-208ENST00000460289 NLRP1Q9C000 1473 aa35.12■■■■□ 3.21
PTPN4-208ENST00000460289 ILDR1Q86SU0 546 aaPredicted RBP35.12■■■■□ 3.21
PTPN4-208ENST00000460289 CEP152O94986 1710 aa35.12■■■■□ 3.21
PTPN4-208ENST00000460289 ROCK1Q13464 1354 aa35.12■■■■□ 3.21
PTPN4-208ENST00000460289 ITGAEP38570 1179 aa35.11■■■■□ 3.21
PTPN4-208ENST00000460289 ARHGAP31Q2M1Z3 1444 aa35.11■■■■□ 3.21
PTPN4-208ENST00000460289 NCKAP5LQ9HCH0 1330 aa35.09■■■■□ 3.21
PTPN4-208ENST00000460289 SPATA31D1Q6ZQQ2 1576 aa35.08■■■■□ 3.21
PTPN4-208ENST00000460289 THEMISQ8N1K5 641 aaPredicted RBP35.08■■■■□ 3.21
PTPN4-208ENST00000460289 ERVK-7P63135 1459 aa35.08■■■■□ 3.21
PTPN4-208ENST00000460289 LMTK2Q8IWU2 1503 aa35.03■■■■□ 3.2
PTPN4-208ENST00000460289 VWDEQ8N2E2 1590 aa35.02■■■■□ 3.2
PTPN4-208ENST00000460289 RRBP1Q9P2E9 1410 aaKnown RBP35.02■■■■□ 3.2
PTPN4-208ENST00000460289 CERKQ8TCT0 537 aa35.01■■■■□ 3.2
PTPN4-208ENST00000460289 UGGT1Q9NYU2 1555 aa35■■■■□ 3.19
PTPN4-208ENST00000460289 FBXO41Q8TF61 875 aa35■■■■□ 3.19
PTPN4-208ENST00000460289 CFAP65Q6ZU64 1925 aaKnown RBP34.97■■■■□ 3.19
PTPN4-208ENST00000460289 ANKLE2Q86XL3 938 aa34.96■■■■□ 3.19
PTPN4-208ENST00000460289 EFCAB6Q5THR3 1501 aa34.88■■■■□ 3.17
PTPN4-208ENST00000460289 UNC13BO14795 1591 aa34.84■■■■□ 3.17
PTPN4-208ENST00000460289 RPRD2Q5VT52 1461 aaKnown RBP34.84■■■■□ 3.17
PTPN4-208ENST00000460289 STAG3Q9UJ98 1225 aa34.82■■■■□ 3.16
PTPN4-208ENST00000460289 NOS1P29475 1434 aa34.81■■■■□ 3.16
PTPN4-208ENST00000460289 POLR1AO95602 1720 aaPredicted RBP34.81■■■■□ 3.16
PTPN4-208ENST00000460289 IDI1Q13907 227 aa34.81■■■■□ 3.16
PTPN4-208ENST00000460289 SLC52A1Q9NWF4 448 aa34.81■■■■□ 3.16
PTPN4-208ENST00000460289 NUP155O75694 1391 aa34.8■■■■□ 3.16
PTPN4-208ENST00000460289 UBR1Q8IWV7 1749 aa34.79■■■■□ 3.16
PTPN4-208ENST00000460289 LTBP4Q8N2S1 1624 aa34.79■■■■□ 3.16
PTPN4-208ENST00000460289 TET3O43151 1660 aa34.79■■■■□ 3.16
PTPN4-208ENST00000460289 ZNF335Q9H4Z2 1342 aaPredicted RBP34.79■■■■□ 3.16
PTPN4-208ENST00000460289 NEURL4Q96JN8 1562 aa34.79■■■■□ 3.16
PTPN4-208ENST00000460289 MED14O60244 1454 aa34.78■■■■□ 3.16
PTPN4-208ENST00000460289 NPHP4O75161 1426 aaPredicted RBP34.76■■■■□ 3.16
PTPN4-208ENST00000460289 EID1Q9Y6B2 187 aa34.73■■■■□ 3.15
PTPN4-208ENST00000460289 SYNMO15061 1565 aa34.73■■■■□ 3.15
PTPN4-208ENST00000460289 PIK3C2BO00750 1634 aa34.73■■■■□ 3.15
PTPN4-208ENST00000460289 TXNDC2Q86VQ3 553 aa34.72■■■■□ 3.15
PTPN4-208ENST00000460289 IQGAP3Q86VI3 1631 aa34.72■■■■□ 3.15
PTPN4-208ENST00000460289 GCC2Q8IWJ2 1684 aa34.72■■■■□ 3.15
PTPN4-208ENST00000460289 ARHGAP23Q9P227 1491 aa34.71■■■■□ 3.15
PTPN4-208ENST00000460289 SLIT1O75093 1534 aa34.71■■■■□ 3.15
PTPN4-208ENST00000460289 NAIPQ13075 1403 aa34.7■■■■□ 3.15
PTPN4-208ENST00000460289 KDM5AP29375 1690 aaKnown RBP34.68■■■■□ 3.14
PTPN4-208ENST00000460289 TMEM2Q9UHN6 1383 aa34.68■■■■□ 3.14
PTPN4-208ENST00000460289 IQSEC2Q5JU85 1478 aa34.67■■■■□ 3.14
PTPN4-208ENST00000460289 SCAF11Q99590 1463 aaKnown RBP34.67■■■■□ 3.14
PTPN4-208ENST00000460289 LTKP29376 864 aa34.67■■■■□ 3.14
PTPN4-208ENST00000460289 HFM1A2PYH4 1435 aa34.64■■■■□ 3.14
PTPN4-208ENST00000460289 IQGAP1P46940 1657 aa34.63■■■■□ 3.13
PTPN4-208ENST00000460289 E9PCH4 1651 aa34.62■■■■□ 3.13
PTPN4-208ENST00000460289 ADGRB3O60242 1522 aa34.6■■■■□ 3.13
PTPN4-208ENST00000460289 CPS1P31327 1500 aa34.55■■■■□ 3.12
PTPN4-208ENST00000460289 HDGFP51858 240 aaKnown RBP34.55■■■■□ 3.12
PTPN4-208ENST00000460289 TRIM52Q96A61 297 aa34.53■■■■□ 3.12
PTPN4-208ENST00000460289 CHGAP10645 457 aaKnown RBP34.52■■■■□ 3.12
PTPN4-208ENST00000460289 TMEM131LA2VDJ0 1609 aa34.46■■■■□ 3.11
PTPN4-208ENST00000460289 UBAP1LF5GYI3 381 aa34.44■■■■□ 3.1
PTPN4-208ENST00000460289 ABCF1Q8NE71 845 aaKnown RBP eCLIP34.44■■■■□ 3.1
PTPN4-208ENST00000460289 BCANQ96GW7 911 aa34.43■■■■□ 3.1
PTPN4-208ENST00000460289 RIMS2Q9UQ26 1411 aa34.43■■■■□ 3.1
PTPN4-208ENST00000460289 PPP1R15AO75807 674 aaPredicted RBP34.42■■■■□ 3.1
PTPN4-208ENST00000460289 ZFYVE9O95405 1425 aa34.41■■■■□ 3.1
PTPN4-208ENST00000460289 SLC4A1APQ9BWU0 796 aaKnown RBP34.41■■■■□ 3.1
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms