RNA–Protein interactions for RNA: ENST00000445503.5

MSH6-204, Transcript of mutS homolog 6, humanhuman

TSL 1 (best)

Gene MSH6, Length 4,158 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-204ENST00000445503 DHX29Q7Z478 1369 aaKnown RBP15.49■□□□□ 0.07
MSH6-204ENST00000445503 ADAMTS8Q9UP79 889 aa15.49■□□□□ 0.07
MSH6-204ENST00000445503 SAMD9Q5K651 1589 aa15.49■□□□□ 0.07
MSH6-204ENST00000445503 C9orf84Q5VXU9 1444 aa15.48■□□□□ 0.07
MSH6-204ENST00000445503 KIAA0586Q9BVV6 1533 aa15.48■□□□□ 0.07
MSH6-204ENST00000445503 DENND4BO75064 1496 aaPredicted RBP15.47■□□□□ 0.07
MSH6-204ENST00000445503 CDCA8Q53HL2 280 aa15.47■□□□□ 0.07
MSH6-204ENST00000445503 TEX14Q8IWB6 1497 aa15.46■□□□□ 0.07
MSH6-204ENST00000445503 GOLGA2Q08379 1002 aa15.46■□□□□ 0.07
MSH6-204ENST00000445503 NUP153P49790 1475 aaKnown RBP15.46■□□□□ 0.06
MSH6-204ENST00000445503 SLC24A1O60721 1099 aa15.46■□□□□ 0.06
MSH6-204ENST00000445503 EIF5BO60841 1220 aaKnown RBP15.45■□□□□ 0.06
MSH6-204ENST00000445503 KDM5BQ9UGL1 1544 aa15.44■□□□□ 0.06
MSH6-204ENST00000445503 MRC2Q9UBG0 1479 aa15.44■□□□□ 0.06
MSH6-204ENST00000445503 PTPRGP23470 1445 aa15.44■□□□□ 0.06
MSH6-204ENST00000445503 SPATA31E1Q6ZUB1 1445 aa15.44■□□□□ 0.06
MSH6-204ENST00000445503 C20orf194Q5TEA3 1177 aa15.43■□□□□ 0.06
MSH6-204ENST00000445503 GPATCH8Q9UKJ3 1502 aaKnown RBP15.43■□□□□ 0.06
MSH6-204ENST00000445503 PRKCSHP14314 528 aaPredicted RBP15.43■□□□□ 0.06
MSH6-204ENST00000445503 BACH2Q9BYV9 841 aa15.43■□□□□ 0.06
MSH6-204ENST00000445503 PZPP20742 1482 aa15.42■□□□□ 0.06
MSH6-204ENST00000445503 ARHGEF11O15085 1522 aa15.42■□□□□ 0.06
MSH6-204ENST00000445503 APAF1O14727 1248 aa15.42■□□□□ 0.06
MSH6-204ENST00000445503 WDR62O43379 1518 aa15.42■□□□□ 0.06
MSH6-204ENST00000445503 ABCA5Q8WWZ7 1642 aa15.41■□□□□ 0.06
MSH6-204ENST00000445503 RSPH4AQ5TD94 716 aa15.41■□□□□ 0.06
MSH6-204ENST00000445503 MS4A1P11836 297 aa15.4■□□□□ 0.06
MSH6-204ENST00000445503 IFT140Q96RY7 1462 aa15.39■□□□□ 0.05
MSH6-204ENST00000445503 UPF2Q9HAU5 1272 aaKnown RBP15.39■□□□□ 0.05
MSH6-204ENST00000445503 RRP7AQ9Y3A4 280 aaKnown RBP15.39■□□□□ 0.05
MSH6-204ENST00000445503 EFCAB2Q5VUJ9 269 aa15.38■□□□□ 0.05
MSH6-204ENST00000445503 IL27Q8NEV9 243 aa15.37■□□□□ 0.05
MSH6-204ENST00000445503 GRIN2AQ12879 1464 aa15.37■□□□□ 0.05
MSH6-204ENST00000445503 GCC2Q8IWJ2 1684 aa15.36■□□□□ 0.05
MSH6-204ENST00000445503 PPP2R1AP30153 589 aa15.36■□□□□ 0.05
MSH6-204ENST00000445503 KIF3BO15066 747 aa15.36■□□□□ 0.05
MSH6-204ENST00000445503 CENPQQ7L2Z9 268 aaPredicted RBP15.36■□□□□ 0.05
MSH6-204ENST00000445503 SPRYD3Q8NCJ5 442 aa15.36■□□□□ 0.05
MSH6-204ENST00000445503 CLUAP1Q96AJ1 413 aa15.36■□□□□ 0.05
MSH6-204ENST00000445503 BCL2L13Q9BXK5 485 aa15.35■□□□□ 0.05
MSH6-204ENST00000445503 SAFB2Q14151 953 aaKnown RBP eCLIP15.35■□□□□ 0.05
MSH6-204ENST00000445503 SLKQ9H2G2 1235 aaPredicted RBP15.35■□□□□ 0.05
MSH6-204ENST00000445503 MORC1Q86VD1 984 aa15.34■□□□□ 0.05
MSH6-204ENST00000445503 ZBTB4Q9P1Z0 1013 aaPredicted RBP15.34■□□□□ 0.05
MSH6-204ENST00000445503 FAM161AQ3B820 660 aa15.34■□□□□ 0.05
MSH6-204ENST00000445503 COG6Q9Y2V7 657 aa15.33■□□□□ 0.05
MSH6-204ENST00000445503 DISP3Q9P2K9 1392 aa15.33■□□□□ 0.04
MSH6-204ENST00000445503 LRRIQ1Q96JM4 1722 aa15.33■□□□□ 0.04
MSH6-204ENST00000445503 SPAG9O60271 1321 aaKnown RBP15.33■□□□□ 0.04
MSH6-204ENST00000445503 RNF123Q5XPI4 1314 aa15.33■□□□□ 0.04
MSH6-204ENST00000445503 DISP1Q96F81 1524 aa15.33■□□□□ 0.04
MSH6-204ENST00000445503 DNMT1P26358 1616 aaKnown RBP15.33■□□□□ 0.04
MSH6-204ENST00000445503 KIF21AQ7Z4S6 1674 aa15.32■□□□□ 0.04
MSH6-204ENST00000445503 RAPGEF6Q8TEU7 1601 aa15.32■□□□□ 0.04
MSH6-204ENST00000445503 MAGI1Q96QZ7 1491 aaPredicted RBP15.32■□□□□ 0.04
MSH6-204ENST00000445503 BCAR3O75815 825 aa15.32■□□□□ 0.04
MSH6-204ENST00000445503 ADAMTS12P58397 1594 aa15.32■□□□□ 0.04
MSH6-204ENST00000445503 AFAP1Q8N556 730 aa15.32■□□□□ 0.04
MSH6-204ENST00000445503 NUTM2DQ5VT03 806 aaPredicted RBP15.31■□□□□ 0.04
MSH6-204ENST00000445503 BECN1Q14457 450 aa15.31■□□□□ 0.04
MSH6-204ENST00000445503 RALGAPBQ86X10 1494 aa15.31■□□□□ 0.04
MSH6-204ENST00000445503 ERBINQ96RT1 1412 aa15.3■□□□□ 0.04
MSH6-204ENST00000445503 TRAK1Q9UPV9 953 aa15.3■□□□□ 0.04
MSH6-204ENST00000445503 NFKBIBQ15653 356 aa15.3■□□□□ 0.04
MSH6-204ENST00000445503 USP35Q9P2H5 1018 aa15.29■□□□□ 0.04
MSH6-204ENST00000445503 U2SURPO15042 1029 aaKnown RBP15.29■□□□□ 0.04
MSH6-204ENST00000445503 PER1O15534 1290 aaPredicted RBP15.29■□□□□ 0.04
MSH6-204ENST00000445503 KIAA0556O60303 1618 aa15.29■□□□□ 0.04
MSH6-204ENST00000445503 FTSJ3Q8IY81 847 aaKnown RBP15.28■□□□□ 0.04
MSH6-204ENST00000445503 PANK1Q8TE04 598 aa15.28■□□□□ 0.04
MSH6-204ENST00000445503 CFAP70Q5T0N1 1121 aa15.28■□□□□ 0.04
MSH6-204ENST00000445503 CENPJQ9HC77 1338 aaPredicted RBP15.28■□□□□ 0.04
MSH6-204ENST00000445503 GGT6Q6P531 493 aa15.28■□□□□ 0.04
MSH6-204ENST00000445503 CFAP53Q96M91 514 aa15.28■□□□□ 0.04
MSH6-204ENST00000445503 GSE1Q14687 1217 aa15.27■□□□□ 0.04
MSH6-204ENST00000445503 LRPPRCP42704 1394 aaKnown RBP15.27■□□□□ 0.04
MSH6-204ENST00000445503 WASHC2CQ9Y4E1 1318 aa15.27■□□□□ 0.03
MSH6-204ENST00000445503 SYNJ2O15056 1496 aa15.27■□□□□ 0.03
MSH6-204ENST00000445503 ARHGAP5Q13017 1502 aa15.27■□□□□ 0.03
MSH6-204ENST00000445503 TESK2Q96S53 571 aa15.26■□□□□ 0.03
MSH6-204ENST00000445503 U2AF1L5P0DN76 240 aaPredicted RBP15.26■□□□□ 0.03
MSH6-204ENST00000445503 U2AF1Q01081 240 aaKnown RBP eCLIP15.26■□□□□ 0.03
MSH6-204ENST00000445503 TARBP1Q13395 1621 aaKnown RBP15.26■□□□□ 0.03
MSH6-204ENST00000445503 BRPF3Q9ULD4 1205 aa15.25■□□□□ 0.03
MSH6-204ENST00000445503 ATP10BO94823 1461 aa15.25■□□□□ 0.03
MSH6-204ENST00000445503 PARD3Q8TEW0 1356 aa15.25■□□□□ 0.03
MSH6-204ENST00000445503 KANK1Q14678 1352 aa15.25■□□□□ 0.03
MSH6-204ENST00000445503 E9PSI1 815 aa15.24■□□□□ 0.03
MSH6-204ENST00000445503 KIF14Q15058 1648 aa15.24■□□□□ 0.03
MSH6-204ENST00000445503 DUSP27Q5VZP5 1158 aa15.23■□□□□ 0.03
MSH6-204ENST00000445503 STK26Q9P289 416 aa15.23■□□□□ 0.03
MSH6-204ENST00000445503 FRAT2O75474 233 aaPredicted RBP15.23■□□□□ 0.03
MSH6-204ENST00000445503 PBRM1Q86U86 1689 aa15.22■□□□□ 0.03
MSH6-204ENST00000445503 CCDC141Q6ZP82 1450 aa15.22■□□□□ 0.03
MSH6-204ENST00000445503 HSP90AA1P07900 732 aaKnown RBP15.22■□□□□ 0.03
MSH6-204ENST00000445503 PLEKHH2Q8IVE3 1493 aa15.22■□□□□ 0.03
MSH6-204ENST00000445503 ANO8Q9HCE9 1232 aaPredicted RBP15.21■□□□□ 0.03
MSH6-204ENST00000445503 PRAG1Q86YV5 1406 aa15.21■□□□□ 0.03
MSH6-204ENST00000445503 BCORL1Q5H9F3 1711 aa15.21■□□□□ 0.03
MSH6-204ENST00000445503 UHRF1BP1Q6BDS2 1440 aa15.21■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms