RNA–Protein interactions for RNA: ENST00000445503.5

MSH6-204, Transcript of mutS homolog 6, humanhuman

TSL 1 (best)

Gene MSH6, Length 4,158 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-204ENST00000445503 NISCHQ9Y2I1 1504 aa22.63■■□□□ 1.21
MSH6-204ENST00000445503 SHROOM4Q9ULL8 1493 aa20.61■□□□□ 0.89
MSH6-204ENST00000445503 SUPT5HO00267 1087 aaKnown RBP20.5■□□□□ 0.87
MSH6-204ENST00000445503 DCAF8L2P0C7V8 631 aa20.41■□□□□ 0.86
MSH6-204ENST00000445503 PCGF6Q9BYE7 350 aa19.56■□□□□ 0.72
MSH6-204ENST00000445503 CHIC1Q5VXU3 224 aa19.41■□□□□ 0.7
MSH6-204ENST00000445503 EHMT2Q96KQ7 1210 aa19.29■□□□□ 0.68
MSH6-204ENST00000445503 HRCP23327 699 aa19.26■□□□□ 0.67
MSH6-204ENST00000445503 LOC105371045A0A1W2PR82 267 aa19.2■□□□□ 0.66
MSH6-204ENST00000445503 PPARGC1BQ86YN6 1023 aaKnown RBP19.14■□□□□ 0.65
MSH6-204ENST00000445503 FAM9AQ8IZU1 332 aaPredicted RBP19.12■□□□□ 0.65
MSH6-204ENST00000445503 ZCCHC6Q5VYS8 1495 aaKnown RBP19.04■□□□□ 0.64
MSH6-204ENST00000445503 MYO15BQ96JP2 1530 aa19■□□□□ 0.63
MSH6-204ENST00000445503 TRIM41Q8WV44 630 aa18.88■□□□□ 0.61
MSH6-204ENST00000445503 TRIM26Q12899 539 aaPredicted RBP18.79■□□□□ 0.6
MSH6-204ENST00000445503 TTBK1Q5TCY1 1321 aaPredicted RBP18.67■□□□□ 0.58
MSH6-204ENST00000445503 CCDC180Q9P1Z9 1646 aa18.64■□□□□ 0.58
MSH6-204ENST00000445503 ZEB1P37275 1124 aaPredicted RBP18.53■□□□□ 0.56
MSH6-204ENST00000445503 DCAF1Q9Y4B6 1507 aa18.45■□□□□ 0.54
MSH6-204ENST00000445503 CCER1Q8TC90 406 aaPredicted RBP18.42■□□□□ 0.54
MSH6-204ENST00000445503 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.29■□□□□ 0.52
MSH6-204ENST00000445503 SCRIBQ14160 1630 aa18.27■□□□□ 0.51
MSH6-204ENST00000445503 ABCC9O60706 1549 aa18.21■□□□□ 0.51
MSH6-204ENST00000445503 RSF1Q96T23 1441 aaPredicted RBP18.19■□□□□ 0.5
MSH6-204ENST00000445503 UBTFP17480 764 aaKnown RBP18.18■□□□□ 0.5
MSH6-204ENST00000445503 RANGAP1P46060 587 aaPredicted RBP18.17■□□□□ 0.5
MSH6-204ENST00000445503 YTHDC1Q96MU7 727 aaKnown RBP18.01■□□□□ 0.47
MSH6-204ENST00000445503 CENPBP07199 599 aaPredicted RBP18■□□□□ 0.47
MSH6-204ENST00000445503 APLP2Q06481 763 aa17.98■□□□□ 0.47
MSH6-204ENST00000445503 PELP1Q8IZL8 1130 aaKnown RBP17.95■□□□□ 0.46
MSH6-204ENST00000445503 DIEXFQ68CQ4 756 aaKnown RBP17.95■□□□□ 0.46
MSH6-204ENST00000445503 SCAF1Q9H7N4 1312 aaKnown RBP17.93■□□□□ 0.46
MSH6-204ENST00000445503 RB1CC1Q8TDY2 1594 aa17.92■□□□□ 0.46
MSH6-204ENST00000445503 HNRNPUL2Q1KMD3 747 aaKnown RBP17.92■□□□□ 0.46
MSH6-204ENST00000445503 CECR2Q9BXF3 1484 aa17.9■□□□□ 0.46
MSH6-204ENST00000445503 PABPN1Q86U42 306 aaKnown RBP eCLIP17.84■□□□□ 0.45
MSH6-204ENST00000445503 GTF3C3Q9Y5Q9 886 aa17.8■□□□□ 0.44
MSH6-204ENST00000445503 ACIN1Q9UKV3 1341 aaKnown RBP17.77■□□□□ 0.44
MSH6-204ENST00000445503 NEUROD1Q13562 356 aa17.76■□□□□ 0.43
MSH6-204ENST00000445503 CSRNP3Q8WYN3 585 aa17.73■□□□□ 0.43
MSH6-204ENST00000445503 MROH2BQ7Z745 1585 aa17.73■□□□□ 0.43
MSH6-204ENST00000445503 ZNF316A6NFI3 1004 aaPredicted RBP17.62■□□□□ 0.41
MSH6-204ENST00000445503 ITGAEP38570 1179 aa17.58■□□□□ 0.41
MSH6-204ENST00000445503 WIZO95785 1651 aa17.57■□□□□ 0.4
MSH6-204ENST00000445503 CEP162Q5TB80 1403 aa17.56■□□□□ 0.4
MSH6-204ENST00000445503 NACADO15069 1562 aa17.54■□□□□ 0.4
MSH6-204ENST00000445503 SOGA1O94964 1423 aa17.52■□□□□ 0.4
MSH6-204ENST00000445503 ABCC8Q09428 1581 aa17.51■□□□□ 0.39
MSH6-204ENST00000445503 CCDC88BA6NC98 1476 aa17.49■□□□□ 0.39
MSH6-204ENST00000445503 ATP1B4Q9UN42 357 aaPredicted RBP17.49■□□□□ 0.39
MSH6-204ENST00000445503 MIER1Q8N108 512 aa17.43■□□□□ 0.38
MSH6-204ENST00000445503 BAZ1AQ9NRL2 1556 aaPredicted RBP17.41■□□□□ 0.38
MSH6-204ENST00000445503 TNIKQ9UKE5 1360 aa17.4■□□□□ 0.38
MSH6-204ENST00000445503 RUSC2Q8N2Y8 1516 aa17.33■□□□□ 0.37
MSH6-204ENST00000445503 CLIP1P30622 1438 aa17.31■□□□□ 0.36
MSH6-204ENST00000445503 GOLGA3Q08378 1498 aa17.3■□□□□ 0.36
MSH6-204ENST00000445503 WRNQ14191 1432 aaPredicted RBP eCLIP17.29■□□□□ 0.36
MSH6-204ENST00000445503 EEA1Q15075 1411 aa17.25■□□□□ 0.35
MSH6-204ENST00000445503 TOP2AP11388 1531 aaKnown RBP17.2■□□□□ 0.34
MSH6-204ENST00000445503 MYT1Q01538 1121 aa17.18■□□□□ 0.34
MSH6-204ENST00000445503 FAM50AQ14320 339 aaKnown RBP17.16■□□□□ 0.34
MSH6-204ENST00000445503 CEP164Q9UPV0 1460 aa17.14■□□□□ 0.33
MSH6-204ENST00000445503 BCANQ96GW7 911 aa17.13■□□□□ 0.33
MSH6-204ENST00000445503 P3H3Q8IVL6 736 aa17.13■□□□□ 0.33
MSH6-204ENST00000445503 SMARCA4P51532 1647 aa17.1■□□□□ 0.33
MSH6-204ENST00000445503 SMARCA2P51531 1590 aa17.09■□□□□ 0.33
MSH6-204ENST00000445503 KANK4Q5T7N3 995 aaPredicted RBP17.04■□□□□ 0.32
MSH6-204ENST00000445503 VPS8Q8N3P4 1428 aa17.03■□□□□ 0.32
MSH6-204ENST00000445503 NEFLP07196 543 aa17.03■□□□□ 0.32
MSH6-204ENST00000445503 BAZ1BQ9UIG0 1483 aaKnown RBP17.01■□□□□ 0.31
MSH6-204ENST00000445503 RAPGEF2Q9Y4G8 1499 aa17■□□□□ 0.31
MSH6-204ENST00000445503 HIRIP3Q9BW71 556 aaPredicted RBP16.98■□□□□ 0.31
MSH6-204ENST00000445503 DDX10Q13206 875 aaKnown RBP16.98■□□□□ 0.31
MSH6-204ENST00000445503 CNGB1Q14028 1251 aaPredicted RBP16.87■□□□□ 0.29
MSH6-204ENST00000445503 FKBP8Q14318 412 aa16.86■□□□□ 0.29
MSH6-204ENST00000445503 SIN3AQ96ST3 1273 aa16.86■□□□□ 0.29
MSH6-204ENST00000445503 SUPT16HQ9Y5B9 1047 aaKnown RBP16.85■□□□□ 0.29
MSH6-204ENST00000445503 TRIM52Q96A61 297 aa16.84■□□□□ 0.29
MSH6-204ENST00000445503 ATAD2BQ9ULI0 1458 aa16.83■□□□□ 0.28
MSH6-204ENST00000445503 ANP32CO43423 234 aa16.83■□□□□ 0.28
MSH6-204ENST00000445503 DHX57Q6P158 1386 aaKnown RBP16.83■□□□□ 0.28
MSH6-204ENST00000445503 SYNJ1O43426 1573 aa16.82■□□□□ 0.28
MSH6-204ENST00000445503 EIF4G1Q04637 1599 aaKnown RBP16.82■□□□□ 0.28
MSH6-204ENST00000445503 KIF27Q86VH2 1401 aa16.81■□□□□ 0.28
MSH6-204ENST00000445503 KCNH8Q96L42 1107 aa16.81■□□□□ 0.28
MSH6-204ENST00000445503 CCNB3Q8WWL7 1395 aa16.8■□□□□ 0.28
MSH6-204ENST00000445503 CLSPNQ9HAW4 1339 aa16.8■□□□□ 0.28
MSH6-204ENST00000445503 ARID3CA6NKF2 412 aa16.76■□□□□ 0.27
MSH6-204ENST00000445503 KIF21BO75037 1637 aa16.75■□□□□ 0.27
MSH6-204ENST00000445503 ERICH6Q7L0X2 663 aa16.74■□□□□ 0.27
MSH6-204ENST00000445503 POLR3GLQ9BT43 218 aa16.74■□□□□ 0.27
MSH6-204ENST00000445503 RAB3GAP2Q9H2M9 1393 aa16.7■□□□□ 0.26
MSH6-204ENST00000445503 TONSLQ96HA7 1378 aa16.67■□□□□ 0.26
MSH6-204ENST00000445503 CUX2O14529 1486 aa16.66■□□□□ 0.26
MSH6-204ENST00000445503 CHIC2Q9UKJ5 165 aa16.66■□□□□ 0.26
MSH6-204ENST00000445503 IRX6P78412 446 aaPredicted RBP16.64■□□□□ 0.25
MSH6-204ENST00000445503 HNRNPUQ00839 825 aaKnown RBP eCLIP16.63■□□□□ 0.251e-6■□□□□ 11
MSH6-204ENST00000445503 ARAP1Q96P48 1450 aa16.62■□□□□ 0.25
MSH6-204ENST00000445503 CARMIL1Q5VZK9 1371 aa16.62■□□□□ 0.25
MSH6-204ENST00000445503 TSHZ2Q9NRE2 1034 aa16.6■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms