RNA–Protein interactions for RNA: ENST00000430771.2

CHD4-202, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 4

Gene CHD4, Length 527 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-202ENST00000430771 MROH1Q8NDA8 1641 aa16.48■□□□□ 0.23
CHD4-202ENST00000430771 ARID4BQ4LE39 1312 aaPredicted RBP16.46■□□□□ 0.23
CHD4-202ENST00000430771 FER1L4A9Z1Z3 1794 aa16.46■□□□□ 0.22
CHD4-202ENST00000430771 ACIN1Q9UKV3 1341 aaKnown RBP16.45■□□□□ 0.22
CHD4-202ENST00000430771 KDM5DQ9BY66 1539 aa16.45■□□□□ 0.22
CHD4-202ENST00000430771 KIF3BO15066 747 aa16.45■□□□□ 0.22
CHD4-202ENST00000430771 RAB3GAP2Q9H2M9 1393 aa16.44■□□□□ 0.22
CHD4-202ENST00000430771 IQGAP3Q86VI3 1631 aa16.44■□□□□ 0.22
CHD4-202ENST00000430771 KANK1Q14678 1352 aa16.43■□□□□ 0.22
CHD4-202ENST00000430771 CEP152O94986 1710 aa16.42■□□□□ 0.22
CHD4-202ENST00000430771 PCGF6Q9BYE7 350 aa16.42■□□□□ 0.22
CHD4-202ENST00000430771 VWDEQ8N2E2 1590 aa16.42■□□□□ 0.22
CHD4-202ENST00000430771 ADAMTSL3P82987 1691 aa16.41■□□□□ 0.22
CHD4-202ENST00000430771 MADDQ8WXG6 1647 aa16.41■□□□□ 0.22
CHD4-202ENST00000430771 MROH2AA6NES4 1674 aa16.4■□□□□ 0.22
CHD4-202ENST00000430771 CNTLNQ9NXG0 1405 aa16.4■□□□□ 0.22
CHD4-202ENST00000430771 TET3O43151 1660 aa16.4■□□□□ 0.22
CHD4-202ENST00000430771 CLTCQ00610 1675 aaKnown RBP16.4■□□□□ 0.22
CHD4-202ENST00000430771 ABCC3O15438 1527 aa16.4■□□□□ 0.22
CHD4-202ENST00000430771 LMTK2Q8IWU2 1503 aa16.4■□□□□ 0.22
CHD4-202ENST00000430771 CAMSAP1Q5T5Y3 1602 aa16.39■□□□□ 0.21
CHD4-202ENST00000430771 GGT6Q6P531 493 aa16.38■□□□□ 0.21
CHD4-202ENST00000430771 PPP6R1Q9UPN7 881 aa16.38■□□□□ 0.21
CHD4-202ENST00000430771 RIMS1Q86UR5 1692 aaKnown RBP16.37■□□□□ 0.21
CHD4-202ENST00000430771 MLECQ14165 292 aa16.37■□□□□ 0.21
CHD4-202ENST00000430771 EFCAB6Q5THR3 1501 aa16.36■□□□□ 0.21
CHD4-202ENST00000430771 HRCP23327 699 aa16.36■□□□□ 0.21
CHD4-202ENST00000430771 ESF1Q9H501 851 aaKnown RBP16.36■□□□□ 0.21
CHD4-202ENST00000430771 NUP155O75694 1391 aa16.36■□□□□ 0.21
CHD4-202ENST00000430771 TRIM52Q96A61 297 aa16.34■□□□□ 0.21
CHD4-202ENST00000430771 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.34■□□□□ 0.214e-12■■■■□ 19.3
CHD4-202ENST00000430771 PZPP20742 1482 aa16.33■□□□□ 0.2
CHD4-202ENST00000430771 WASHC2CQ9Y4E1 1318 aa16.32■□□□□ 0.2
CHD4-202ENST00000430771 C3P01024 1663 aa16.31■□□□□ 0.2
CHD4-202ENST00000430771 RPRD2Q5VT52 1461 aaKnown RBP16.31■□□□□ 0.2
CHD4-202ENST00000430771 E9PCH4 1651 aa16.3■□□□□ 0.2
CHD4-202ENST00000430771 ARHGAP31Q2M1Z3 1444 aa16.29■□□□□ 0.2
CHD4-202ENST00000430771 PREX1Q8TCU6 1659 aa16.27■□□□□ 0.2
CHD4-202ENST00000430771 SPHKAPQ2M3C7 1700 aa16.27■□□□□ 0.19
CHD4-202ENST00000430771 NPATQ14207 1427 aa16.27■□□□□ 0.19
CHD4-202ENST00000430771 SLC4A1APQ9BWU0 796 aaKnown RBP16.26■□□□□ 0.19
CHD4-202ENST00000430771 PTPRMP28827 1452 aa16.25■□□□□ 0.19
CHD4-202ENST00000430771 SPATA31D1Q6ZQQ2 1576 aa16.25■□□□□ 0.19
CHD4-202ENST00000430771 ZMYM3Q14202 1370 aa16.25■□□□□ 0.19
CHD4-202ENST00000430771 ERVK-7P63135 1459 aa16.23■□□□□ 0.19
CHD4-202ENST00000430771 KDM4FA0A1W2PPD8 638 aa16.23■□□□□ 0.19
CHD4-202ENST00000430771 MPHOSPH9Q99550 1183 aa16.22■□□□□ 0.19
CHD4-202ENST00000430771 TRPM2O94759 1503 aa16.22■□□□□ 0.19
CHD4-202ENST00000430771 DHX57Q6P158 1386 aaKnown RBP16.21■□□□□ 0.19
CHD4-202ENST00000430771 PKD2Q13563 968 aa16.2■□□□□ 0.18
CHD4-202ENST00000430771 MYO3AQ8NEV4 1616 aa16.19■□□□□ 0.18
CHD4-202ENST00000430771 SYNMO15061 1565 aa16.19■□□□□ 0.18
CHD4-202ENST00000430771 CFAP65Q6ZU64 1925 aaKnown RBP16.19■□□□□ 0.18
CHD4-202ENST00000430771 NOS1P29475 1434 aa16.19■□□□□ 0.18
CHD4-202ENST00000430771 PIK3C2BO00750 1634 aa16.17■□□□□ 0.18
CHD4-202ENST00000430771 PTPRTO14522 1441 aa16.17■□□□□ 0.18
CHD4-202ENST00000430771 TNRQ92752 1358 aa16.16■□□□□ 0.18
CHD4-202ENST00000430771 ZNF142P52746 1687 aaPredicted RBP16.16■□□□□ 0.18
CHD4-202ENST00000430771 NLRP1Q9C000 1473 aa16.15■□□□□ 0.18
CHD4-202ENST00000430771 CLTCL1P53675 1640 aa16.14■□□□□ 0.17
CHD4-202ENST00000430771 CCDC144AA2RUR9 1427 aa16.13■□□□□ 0.17
CHD4-202ENST00000430771 CEBPAP49715 358 aaPredicted RBP16.13■□□□□ 0.17
CHD4-202ENST00000430771 PLPPR3Q6T4P5 718 aa16.13■□□□□ 0.17
CHD4-202ENST00000430771 KDM5AP29375 1690 aaKnown RBP16.13■□□□□ 0.17
CHD4-202ENST00000430771 SETD1BQ9UPS6 1966 aaKnown RBP16.13■□□□□ 0.17
CHD4-202ENST00000430771 KIF1BO60333 1816 aa16.12■□□□□ 0.17
CHD4-202ENST00000430771 ADGRB3O60242 1522 aa16.12■□□□□ 0.17
CHD4-202ENST00000430771 UGGT1Q9NYU2 1555 aa16.12■□□□□ 0.17
CHD4-202ENST00000430771 CEP170BQ9Y4F5 1589 aaPredicted RBP16.12■□□□□ 0.17
CHD4-202ENST00000430771 PLA2R1Q13018 1463 aa16.11■□□□□ 0.17
CHD4-202ENST00000430771 FOXD1Q16676 465 aa16.11■□□□□ 0.17
CHD4-202ENST00000430771 FBXO31Q5XUX0 539 aaPredicted RBP16.11■□□□□ 0.17
CHD4-202ENST00000430771 ANKRD30BQ9BXX2 1392 aa16.11■□□□□ 0.17
CHD4-202ENST00000430771 UHRF1BP1Q6BDS2 1440 aa16.11■□□□□ 0.17
CHD4-202ENST00000430771 SLC52A1Q9NWF4 448 aa16.09■□□□□ 0.17
CHD4-202ENST00000430771 CLSPNQ9HAW4 1339 aa16.09■□□□□ 0.17
CHD4-202ENST00000430771 A2ML1A8K2U0 1454 aa16.09■□□□□ 0.17
CHD4-202ENST00000430771 NEURL4Q96JN8 1562 aa16.09■□□□□ 0.17
CHD4-202ENST00000430771 UBR1Q8IWV7 1749 aa16.08■□□□□ 0.16
CHD4-202ENST00000430771 TMEM131LA2VDJ0 1609 aa16.06■□□□□ 0.16
CHD4-202ENST00000430771 CCER1Q8TC90 406 aaPredicted RBP16.06■□□□□ 0.16
CHD4-202ENST00000430771 MYO5BQ9ULV0 1848 aa16.05■□□□□ 0.16
CHD4-202ENST00000430771 IDI1Q13907 227 aa16.01■□□□□ 0.15
CHD4-202ENST00000430771 STAG3Q9UJ98 1225 aa16.01■□□□□ 0.15
CHD4-202ENST00000430771 LMTK3Q96Q04 1460 aa16.01■□□□□ 0.15
CHD4-202ENST00000430771 SPATA31E1Q6ZUB1 1445 aa16■□□□□ 0.15
CHD4-202ENST00000430771 IFT172Q9UG01 1749 aa15.99■□□□□ 0.15
CHD4-202ENST00000430771 SLIT1O75093 1534 aa15.99■□□□□ 0.15
CHD4-202ENST00000430771 PPLO60437 1756 aa15.98■□□□□ 0.15
CHD4-202ENST00000430771 CHGAP10645 457 aaKnown RBP15.98■□□□□ 0.15
CHD4-202ENST00000430771 POLR1AO95602 1720 aaPredicted RBP15.97■□□□□ 0.15
CHD4-202ENST00000430771 AEBP2Q6ZN18 517 aaPredicted RBP15.97■□□□□ 0.15
CHD4-202ENST00000430771 NEXMIFQ5QGS0 1516 aa15.97■□□□□ 0.15
CHD4-202ENST00000430771 ARHGAP23Q9P227 1491 aa15.96■□□□□ 0.14
CHD4-202ENST00000430771 TONSLQ96HA7 1378 aa15.95■□□□□ 0.14
CHD4-202ENST00000430771 ZNF326Q5BKZ1 582 aaKnown RBP15.94■□□□□ 0.14
CHD4-202ENST00000430771 THEMISQ8N1K5 641 aaPredicted RBP15.94■□□□□ 0.14
CHD4-202ENST00000430771 TMEM2Q9UHN6 1383 aa15.94■□□□□ 0.14
CHD4-202ENST00000430771 ZFYVE9O95405 1425 aa15.94■□□□□ 0.14
CHD4-202ENST00000430771 RIMS2Q9UQ26 1411 aa15.94■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 109.3 ms