RNA–Protein interactions for RNA: ENST00000430771.2

CHD4-202, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 4

Gene CHD4, Length 527 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-202ENST00000430771 NISCHQ9Y2I1 1504 aa26.13■■□□□ 1.77
CHD4-202ENST00000430771 CCDC180Q9P1Z9 1646 aa23.2■■□□□ 1.3
CHD4-202ENST00000430771 ABCC9O60706 1549 aa22.2■■□□□ 1.14
CHD4-202ENST00000430771 ZCCHC6Q5VYS8 1495 aaKnown RBP21.9■■□□□ 1.1
CHD4-202ENST00000430771 DCAF1Q9Y4B6 1507 aa21.69■■□□□ 1.06
CHD4-202ENST00000430771 NACADO15069 1562 aa21.66■■□□□ 1.06
CHD4-202ENST00000430771 MYO15BQ96JP2 1530 aa21.65■■□□□ 1.06
CHD4-202ENST00000430771 RB1CC1Q8TDY2 1594 aa21.61■■□□□ 1.05
CHD4-202ENST00000430771 DCAF8L2P0C7V8 631 aa21.54■■□□□ 1.04
CHD4-202ENST00000430771 UNC13AQ9UPW8 1703 aa21.12■□□□□ 0.97
CHD4-202ENST00000430771 SCRIBQ14160 1630 aa21.12■□□□□ 0.97
CHD4-202ENST00000430771 BICRAQ9NZM4 1560 aa20.87■□□□□ 0.93
CHD4-202ENST00000430771 SHROOM4Q9ULL8 1493 aa20.81■□□□□ 0.92
CHD4-202ENST00000430771 PABPN1Q86U42 306 aaKnown RBP eCLIP20.71■□□□□ 0.91
CHD4-202ENST00000430771 EIF4G1Q04637 1599 aaKnown RBP20.33■□□□□ 0.84
CHD4-202ENST00000430771 BAZ1AQ9NRL2 1556 aaPredicted RBP20.28■□□□□ 0.84
CHD4-202ENST00000430771 CECR2Q9BXF3 1484 aa20.25■□□□□ 0.83
CHD4-202ENST00000430771 SMARCA4P51532 1647 aa20.25■□□□□ 0.83
CHD4-202ENST00000430771 CC2D2AQ9P2K1 1620 aa20.15■□□□□ 0.82
CHD4-202ENST00000430771 MROH2BQ7Z745 1585 aa20.12■□□□□ 0.81
CHD4-202ENST00000430771 DNAJC5BQ9UF47 199 aa20.08■□□□□ 0.81
CHD4-202ENST00000430771 SMARCA2P51531 1590 aa20.05■□□□□ 0.8
CHD4-202ENST00000430771 PEG3Q9GZU2 1588 aa20.05■□□□□ 0.8
CHD4-202ENST00000430771 RSF1Q96T23 1441 aaPredicted RBP20■□□□□ 0.79
CHD4-202ENST00000430771 ATAD2BQ9ULI0 1458 aa19.99■□□□□ 0.79
CHD4-202ENST00000430771 WIZO95785 1651 aa19.95■□□□□ 0.78
CHD4-202ENST00000430771 HMGXB3Q12766 1538 aa19.95■□□□□ 0.78
CHD4-202ENST00000430771 NCAPD3P42695 1498 aa19.92■□□□□ 0.78
CHD4-202ENST00000430771 BAZ1BQ9UIG0 1483 aaKnown RBP19.89■□□□□ 0.77
CHD4-202ENST00000430771 TOP2AP11388 1531 aaKnown RBP19.81■□□□□ 0.76
CHD4-202ENST00000430771 SUPT5HO00267 1087 aaKnown RBP19.69■□□□□ 0.74
CHD4-202ENST00000430771 CCDC88BA6NC98 1476 aa19.48■□□□□ 0.71
CHD4-202ENST00000430771 LAMC3Q9Y6N6 1575 aa19.41■□□□□ 0.7
CHD4-202ENST00000430771 PRDM2Q13029 1718 aa19.37■□□□□ 0.69
CHD4-202ENST00000430771 CADPSQ9ULU8 1353 aa19.34■□□□□ 0.69
CHD4-202ENST00000430771 CFTRP13569 1480 aa19.33■□□□□ 0.68
CHD4-202ENST00000430771 NESP48681 1621 aa19.29■□□□□ 0.68
CHD4-202ENST00000430771 PDS5BQ9NTI5 1447 aa19.22■□□□□ 0.67
CHD4-202ENST00000430771 KIF21AQ7Z4S6 1674 aa19.18■□□□□ 0.66
CHD4-202ENST00000430771 ERCC6Q03468 1493 aa19.16■□□□□ 0.66
CHD4-202ENST00000430771 FANCD2Q9BXW9 1451 aa19.16■□□□□ 0.66
CHD4-202ENST00000430771 CEP164Q9UPV0 1460 aa19.13■□□□□ 0.65
CHD4-202ENST00000430771 THOC2Q8NI27 1593 aaKnown RBP19.04■□□□□ 0.64
CHD4-202ENST00000430771 MRC2Q9UBG0 1479 aa19.03■□□□□ 0.64
CHD4-202ENST00000430771 WDR62O43379 1518 aa18.97■□□□□ 0.63
CHD4-202ENST00000430771 DNMBPQ6XZF7 1577 aa18.95■□□□□ 0.62
CHD4-202ENST00000430771 ABCC8Q09428 1581 aa18.94■□□□□ 0.62
CHD4-202ENST00000430771 URB2Q14146 1524 aaKnown RBP18.92■□□□□ 0.62
CHD4-202ENST00000430771 WRNQ14191 1432 aaPredicted RBP eCLIP18.9■□□□□ 0.629e-6■■■■■ 50.1
CHD4-202ENST00000430771 TOPBP1Q92547 1522 aa18.9■□□□□ 0.62
CHD4-202ENST00000430771 BIVM-ERCC5R4GMW8 1640 aa18.88■□□□□ 0.61
CHD4-202ENST00000430771 CUX1P39880 1505 aa18.87■□□□□ 0.61
CHD4-202ENST00000430771 TOP2BQ02880 1626 aa18.85■□□□□ 0.61
CHD4-202ENST00000430771 CUX2O14529 1486 aa18.85■□□□□ 0.61
CHD4-202ENST00000430771 SYNJ1O43426 1573 aa18.85■□□□□ 0.61
CHD4-202ENST00000430771 FGD5Q6ZNL6 1462 aa18.77■□□□□ 0.6
CHD4-202ENST00000430771 POLA1P09884 1462 aaPredicted RBP18.76■□□□□ 0.59
CHD4-202ENST00000430771 IFT140Q96RY7 1462 aa18.71■□□□□ 0.59
CHD4-202ENST00000430771 WDR97A6NE52 1622 aa18.68■□□□□ 0.58
CHD4-202ENST00000430771 TARBP1Q13395 1621 aaKnown RBP18.67■□□□□ 0.58
CHD4-202ENST00000430771 SOGA1O94964 1423 aa18.64■□□□□ 0.57
CHD4-202ENST00000430771 TRIM41Q8WV44 630 aa18.62■□□□□ 0.57
CHD4-202ENST00000430771 RAD54L2Q9Y4B4 1467 aa18.62■□□□□ 0.57
CHD4-202ENST00000430771 ABCA10Q8WWZ4 1543 aa18.62■□□□□ 0.57
CHD4-202ENST00000430771 CHIC1Q5VXU3 224 aa18.58■□□□□ 0.56
CHD4-202ENST00000430771 EIF4G3O43432 1585 aaKnown RBP18.58■□□□□ 0.56
CHD4-202ENST00000430771 ABCA5Q8WWZ7 1642 aa18.55■□□□□ 0.56
CHD4-202ENST00000430771 ZNF608Q9ULD9 1512 aaPredicted RBP18.52■□□□□ 0.56
CHD4-202ENST00000430771 PBRM1Q86U86 1689 aa18.5■□□□□ 0.55
CHD4-202ENST00000430771 KIF27Q86VH2 1401 aa18.48■□□□□ 0.55
CHD4-202ENST00000430771 GAPVD1Q14C86 1478 aa18.47■□□□□ 0.55
CHD4-202ENST00000430771 TDRD9Q8NDG6 1382 aaKnown RBP18.45■□□□□ 0.54
CHD4-202ENST00000430771 AQRO60306 1485 aaKnown RBP eCLIP18.45■□□□□ 0.548e-12■■■■■ 31.5
CHD4-202ENST00000430771 GRIN2BQ13224 1484 aa18.43■□□□□ 0.54
CHD4-202ENST00000430771 ERICH3Q5RHP9 1530 aa18.43■□□□□ 0.54
CHD4-202ENST00000430771 EEA1Q15075 1411 aa18.4■□□□□ 0.54
CHD4-202ENST00000430771 MAGI1Q96QZ7 1491 aaPredicted RBP18.39■□□□□ 0.53
CHD4-202ENST00000430771 CUL7Q14999 1698 aa18.38■□□□□ 0.53
CHD4-202ENST00000430771 ADAMTS12P58397 1594 aa18.36■□□□□ 0.53
CHD4-202ENST00000430771 SNAPC4Q5SXM2 1469 aa18.36■□□□□ 0.53
CHD4-202ENST00000430771 RUSC2Q8N2Y8 1516 aa18.33■□□□□ 0.52
CHD4-202ENST00000430771 SYNJ2O15056 1496 aa18.28■□□□□ 0.52
CHD4-202ENST00000430771 FHAD1B1AJZ9 1412 aa18.28■□□□□ 0.52
CHD4-202ENST00000430771 CHD1O14646 1710 aa18.27■□□□□ 0.52
CHD4-202ENST00000430771 IGF1RP08069 1367 aa18.26■□□□□ 0.51
CHD4-202ENST00000430771 KIF21BO75037 1637 aa18.21■□□□□ 0.51
CHD4-202ENST00000430771 GRIN2AQ12879 1464 aa18.2■□□□□ 0.5
CHD4-202ENST00000430771 CARMIL1Q5VZK9 1371 aa18.2■□□□□ 0.5
CHD4-202ENST00000430771 PRXQ9BXM0 1461 aa18.2■□□□□ 0.5
CHD4-202ENST00000430771 CSRNP3Q8WYN3 585 aa18.19■□□□□ 0.5
CHD4-202ENST00000430771 RAPGEF2Q9Y4G8 1499 aa18.19■□□□□ 0.5
CHD4-202ENST00000430771 FAM9AQ8IZU1 332 aaPredicted RBP18.18■□□□□ 0.5
CHD4-202ENST00000430771 CHMP7Q8WUX9 453 aaPredicted RBP18.16■□□□□ 0.5
CHD4-202ENST00000430771 FBLN2P98095 1184 aa18.13■□□□□ 0.49
CHD4-202ENST00000430771 CTTNBP2Q8WZ74 1663 aa18.1■□□□□ 0.49
CHD4-202ENST00000430771 CEP170Q5SW79 1584 aa18.1■□□□□ 0.49
CHD4-202ENST00000430771 GOLGA3Q08378 1498 aa18.1■□□□□ 0.49
CHD4-202ENST00000430771 NUP160Q12769 1436 aa18.1■□□□□ 0.49
CHD4-202ENST00000430771 CLASP1Q7Z460 1538 aa18.05■□□□□ 0.48
CHD4-202ENST00000430771 IQGAP2Q13576 1575 aa18.01■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms