RNA–Protein interactions for RNA: ENST00000405805.5

HMGB1-206, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 4,199 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-206ENST00000405805 SLKQ9H2G2 1235 aaPredicted RBP15.48■□□□□ 0.07
HMGB1-206ENST00000405805 HECW1Q76N89 1606 aa15.48■□□□□ 0.07
HMGB1-206ENST00000405805 TMF1P82094 1093 aa15.48■□□□□ 0.07
HMGB1-206ENST00000405805 MIA2Q96PC5 1412 aa15.48■□□□□ 0.07
HMGB1-206ENST00000405805 MYBBP1AQ9BQG0 1328 aaKnown RBP15.48■□□□□ 0.07
HMGB1-206ENST00000405805 NBPF1Q3BBV0 1214 aa15.48■□□□□ 0.07
HMGB1-206ENST00000405805 ANKRD50Q9ULJ7 1429 aa15.47■□□□□ 0.07
HMGB1-206ENST00000405805 TRIM44Q96DX7 344 aaPredicted RBP15.46■□□□□ 0.07
HMGB1-206ENST00000405805 RSPH6AQ9H0K4 717 aa15.46■□□□□ 0.07
HMGB1-206ENST00000405805 PNNQ9H307 717 aaKnown RBP15.46■□□□□ 0.07
HMGB1-206ENST00000405805 GRIN2AQ12879 1464 aa15.46■□□□□ 0.07
HMGB1-206ENST00000405805 ABCC5O15440 1437 aa15.46■□□□□ 0.07
HMGB1-206ENST00000405805 TROQ12816 1431 aaPredicted RBP15.46■□□□□ 0.07
HMGB1-206ENST00000405805 UPF2Q9HAU5 1272 aaKnown RBP15.46■□□□□ 0.06
HMGB1-206ENST00000405805 CTTNBP2Q8WZ74 1663 aa15.45■□□□□ 0.06
HMGB1-206ENST00000405805 CDK11BP21127 795 aaKnown RBP15.45■□□□□ 0.06
HMGB1-206ENST00000405805 ANP32BQ92688 251 aaKnown RBP15.45■□□□□ 0.06
HMGB1-206ENST00000405805 BRPF3Q9ULD4 1205 aa15.45■□□□□ 0.06
HMGB1-206ENST00000405805 KIF15Q9NS87 1388 aa15.44■□□□□ 0.06
HMGB1-206ENST00000405805 EFCAB2Q5VUJ9 269 aa15.44■□□□□ 0.06
HMGB1-206ENST00000405805 CLUAP1Q96AJ1 413 aa15.43■□□□□ 0.06
HMGB1-206ENST00000405805 CFAP43Q8NDM7 1665 aa15.43■□□□□ 0.06
HMGB1-206ENST00000405805 BCL2L13Q9BXK5 485 aa15.42■□□□□ 0.06
HMGB1-206ENST00000405805 RRP7AQ9Y3A4 280 aaKnown RBP15.41■□□□□ 0.06
HMGB1-206ENST00000405805 SAFB2Q14151 953 aaKnown RBP eCLIP15.41■□□□□ 0.06
HMGB1-206ENST00000405805 UGGT2Q9NYU1 1516 aa15.41■□□□□ 0.06
HMGB1-206ENST00000405805 ANKRD30BQ9BXX2 1392 aa15.4■□□□□ 0.06
HMGB1-206ENST00000405805 MAGI3Q5TCQ9 1506 aa15.4■□□□□ 0.06
HMGB1-206ENST00000405805 ABCA5Q8WWZ7 1642 aa15.39■□□□□ 0.05
HMGB1-206ENST00000405805 GZF1Q9H116 711 aaPredicted RBP15.39■□□□□ 0.05
HMGB1-206ENST00000405805 ADAMTS8Q9UP79 889 aa15.39■□□□□ 0.05
HMGB1-206ENST00000405805 NUP153P49790 1475 aaKnown RBP15.38■□□□□ 0.05
HMGB1-206ENST00000405805 KIF3BO15066 747 aa15.38■□□□□ 0.05
HMGB1-206ENST00000405805 ARHGEF11O15085 1522 aa15.38■□□□□ 0.05
HMGB1-206ENST00000405805 AFAP1Q8N556 730 aa15.37■□□□□ 0.05
HMGB1-206ENST00000405805 APAF1O14727 1248 aa15.37■□□□□ 0.05
HMGB1-206ENST00000405805 GOLGA2Q08379 1002 aa15.37■□□□□ 0.05
HMGB1-206ENST00000405805 C20orf194Q5TEA3 1177 aa15.37■□□□□ 0.05
HMGB1-206ENST00000405805 GGT6Q6P531 493 aa15.37■□□□□ 0.05
HMGB1-206ENST00000405805 ZMYND15Q9H091 742 aa15.36■□□□□ 0.05
HMGB1-206ENST00000405805 SPAG9O60271 1321 aaKnown RBP15.36■□□□□ 0.05
HMGB1-206ENST00000405805 SYNJ2O15056 1496 aa15.36■□□□□ 0.05
HMGB1-206ENST00000405805 C9orf84Q5VXU9 1444 aa15.35■□□□□ 0.05
HMGB1-206ENST00000405805 CCDC144AA2RUR9 1427 aa15.35■□□□□ 0.05
HMGB1-206ENST00000405805 NCOA1Q15788 1441 aa15.35■□□□□ 0.05
HMGB1-206ENST00000405805 RSPH4AQ5TD94 716 aa15.34■□□□□ 0.05
HMGB1-206ENST00000405805 CAMSAP2Q08AD1 1489 aa15.34■□□□□ 0.05
HMGB1-206ENST00000405805 PDE3BQ13370 1112 aa15.33■□□□□ 0.05
HMGB1-206ENST00000405805 ADAMTS12P58397 1594 aa15.33■□□□□ 0.05
HMGB1-206ENST00000405805 NUTM2DQ5VT03 806 aaPredicted RBP15.33■□□□□ 0.04
HMGB1-206ENST00000405805 COG6Q9Y2V7 657 aa15.33■□□□□ 0.04
HMGB1-206ENST00000405805 BECN1Q14457 450 aa15.33■□□□□ 0.04
HMGB1-206ENST00000405805 KIAA1107Q9UPP5 1409 aa15.33■□□□□ 0.04
HMGB1-206ENST00000405805 ROCK1Q13464 1354 aa15.33■□□□□ 0.04
HMGB1-206ENST00000405805 SMG6Q86US8 1419 aaKnown RBP15.32■□□□□ 0.04
HMGB1-206ENST00000405805 U2SURPO15042 1029 aaKnown RBP15.32■□□□□ 0.04
HMGB1-206ENST00000405805 BACH2Q9BYV9 841 aa15.32■□□□□ 0.04
HMGB1-206ENST00000405805 TARBP1Q13395 1621 aaKnown RBP15.32■□□□□ 0.04
HMGB1-206ENST00000405805 SAMD9Q5K651 1589 aa15.32■□□□□ 0.04
HMGB1-206ENST00000405805 FTSJ3Q8IY81 847 aaKnown RBP15.31■□□□□ 0.04
HMGB1-206ENST00000405805 NFKBIBQ15653 356 aa15.31■□□□□ 0.04
HMGB1-206ENST00000405805 DISP1Q96F81 1524 aa15.31■□□□□ 0.04
HMGB1-206ENST00000405805 GPATCH8Q9UKJ3 1502 aaKnown RBP15.31■□□□□ 0.04
HMGB1-206ENST00000405805 PLPPR3Q6T4P5 718 aa15.3■□□□□ 0.04
HMGB1-206ENST00000405805 ZBTB7CA1YPR0 619 aa15.29■□□□□ 0.04
HMGB1-206ENST00000405805 GSE1Q14687 1217 aa15.29■□□□□ 0.04
HMGB1-206ENST00000405805 WDR62O43379 1518 aa15.29■□□□□ 0.04
HMGB1-206ENST00000405805 CDCA8Q53HL2 280 aa15.29■□□□□ 0.04
HMGB1-206ENST00000405805 MAGI1Q96QZ7 1491 aaPredicted RBP15.29■□□□□ 0.04
HMGB1-206ENST00000405805 STAG3Q9UJ98 1225 aa15.29■□□□□ 0.04
HMGB1-206ENST00000405805 MORC1Q86VD1 984 aa15.28■□□□□ 0.04
HMGB1-206ENST00000405805 FRAT2O75474 233 aaPredicted RBP15.27■□□□□ 0.03
HMGB1-206ENST00000405805 BCAR3O75815 825 aa15.27■□□□□ 0.03
HMGB1-206ENST00000405805 FAM161AQ3B820 660 aa15.27■□□□□ 0.03
HMGB1-206ENST00000405805 PANK1Q8TE04 598 aa15.26■□□□□ 0.03
HMGB1-206ENST00000405805 RPRD2Q5VT52 1461 aaKnown RBP15.26■□□□□ 0.03
HMGB1-206ENST00000405805 ARHGAP5Q13017 1502 aa15.25■□□□□ 0.03
HMGB1-206ENST00000405805 BRD4O60885 1362 aaPredicted RBP15.25■□□□□ 0.03
HMGB1-206ENST00000405805 ATP10BO94823 1461 aa15.25■□□□□ 0.03
HMGB1-206ENST00000405805 PDE4CQ08493 712 aa15.25■□□□□ 0.03
HMGB1-206ENST00000405805 TCOF1Q13428 1488 aaKnown RBP15.24■□□□□ 0.03
HMGB1-206ENST00000405805 KIAA0556O60303 1618 aa15.24■□□□□ 0.03
HMGB1-206ENST00000405805 CENPQQ7L2Z9 268 aaPredicted RBP15.24■□□□□ 0.03
HMGB1-206ENST00000405805 MS4A1P11836 297 aa15.24■□□□□ 0.03
HMGB1-206ENST00000405805 KDM6BO15054 1643 aa15.24■□□□□ 0.03
HMGB1-206ENST00000405805 RAPGEF6Q8TEU7 1601 aa15.24■□□□□ 0.03
HMGB1-206ENST00000405805 U2AF1L5P0DN76 240 aaPredicted RBP15.24■□□□□ 0.03
HMGB1-206ENST00000405805 U2AF1Q01081 240 aaKnown RBP eCLIP15.24■□□□□ 0.033e-11■■■■□ 22.7
HMGB1-206ENST00000405805 TPRNQ4KMQ1 711 aa15.24■□□□□ 0.03
HMGB1-206ENST00000405805 TRAK1Q9UPV9 953 aa15.24■□□□□ 0.03
HMGB1-206ENST00000405805 PBRM1Q86U86 1689 aa15.24■□□□□ 0.03
HMGB1-206ENST00000405805 STK26Q9P289 416 aa15.23■□□□□ 0.03
HMGB1-206ENST00000405805 EIF4G3O43432 1585 aaKnown RBP15.23■□□□□ 0.03
HMGB1-206ENST00000405805 MFAP1P55081 439 aaKnown RBP15.22■□□□□ 0.03
HMGB1-206ENST00000405805 FOXD4L1Q9NU39 408 aa15.22■□□□□ 0.03
HMGB1-206ENST00000405805 DNTTIP2Q5QJE6 756 aaKnown RBP15.21■□□□□ 0.03
HMGB1-206ENST00000405805 KANK1Q14678 1352 aa15.21■□□□□ 0.03
HMGB1-206ENST00000405805 USP35Q9P2H5 1018 aa15.21■□□□□ 0.02
HMGB1-206ENST00000405805 CENPJQ9HC77 1338 aaPredicted RBP15.2■□□□□ 0.02
HMGB1-206ENST00000405805 CFAP53Q96M91 514 aa15.2■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms