RNA–Protein interactions for RNA: ENST00000396386.6

CBX3-202, Transcript of chromobox 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CBX3, Length 1,857 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX3-202ENST00000396386 ANP32CO43423 234 aa20.99■□□□□ 0.95
CBX3-202ENST00000396386 KDM5CP41229 1560 aa20.99■□□□□ 0.95
CBX3-202ENST00000396386 EIF2AK4Q9P2K8 1649 aaKnown RBP20.99■□□□□ 0.95
CBX3-202ENST00000396386 TRHP20396 242 aaPredicted RBP20.98■□□□□ 0.95
CBX3-202ENST00000396386 WASHC2AQ641Q2 1341 aa20.98■□□□□ 0.95
CBX3-202ENST00000396386 CCDC144AA2RUR9 1427 aa20.98■□□□□ 0.95
CBX3-202ENST00000396386 NPM1P06748 294 aaKnown RBP eCLIP20.98■□□□□ 0.95
CBX3-202ENST00000396386 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20.96■□□□□ 0.951e-10■■■■□ 21.8
CBX3-202ENST00000396386 ATP10AO60312 1499 aa20.95■□□□□ 0.95
CBX3-202ENST00000396386 GTF3C3Q9Y5Q9 886 aa20.95■□□□□ 0.94
CBX3-202ENST00000396386 SCAPERQ9BY12 1400 aa20.95■□□□□ 0.94
CBX3-202ENST00000396386 CNTLNQ9NXG0 1405 aa20.95■□□□□ 0.94
CBX3-202ENST00000396386 CCDC7Q96M83 1385 aa20.95■□□□□ 0.94
CBX3-202ENST00000396386 CCER2I3L3R5 266 aa20.94■□□□□ 0.94
CBX3-202ENST00000396386 PLA2R1Q13018 1463 aa20.94■□□□□ 0.94
CBX3-202ENST00000396386 E9PCH4 1651 aa20.94■□□□□ 0.94
CBX3-202ENST00000396386 AFAP1Q8N556 730 aa20.93■□□□□ 0.94
CBX3-202ENST00000396386 TET3O43151 1660 aa20.93■□□□□ 0.94
CBX3-202ENST00000396386 ZNF326Q5BKZ1 582 aaKnown RBP20.92■□□□□ 0.94
CBX3-202ENST00000396386 USP47Q96K76 1375 aa20.92■□□□□ 0.94
CBX3-202ENST00000396386 TRPM1Q7Z4N2 1603 aa20.91■□□□□ 0.94
CBX3-202ENST00000396386 KIDINS220Q9ULH0 1771 aa20.91■□□□□ 0.94
CBX3-202ENST00000396386 SPHKAPQ2M3C7 1700 aa20.91■□□□□ 0.94
CBX3-202ENST00000396386 ZNF518AQ6AHZ1 1483 aa20.9■□□□□ 0.94
CBX3-202ENST00000396386 BCORL1Q5H9F3 1711 aa20.89■□□□□ 0.94
CBX3-202ENST00000396386 VWDEQ8N2E2 1590 aa20.89■□□□□ 0.93
CBX3-202ENST00000396386 PRDM15P57071 1507 aaPredicted RBP20.89■□□□□ 0.93
CBX3-202ENST00000396386 TRPM2O94759 1503 aa20.87■□□□□ 0.93
CBX3-202ENST00000396386 CD109Q6YHK3 1445 aa20.87■□□□□ 0.93
CBX3-202ENST00000396386 CEP152O94986 1710 aa20.87■□□□□ 0.93
CBX3-202ENST00000396386 MROH1Q8NDA8 1641 aa20.86■□□□□ 0.93
CBX3-202ENST00000396386 A2MP01023 1474 aa20.86■□□□□ 0.93
CBX3-202ENST00000396386 PRAG1Q86YV5 1406 aa20.86■□□□□ 0.93
CBX3-202ENST00000396386 LAMC1P11047 1609 aa20.86■□□□□ 0.93
CBX3-202ENST00000396386 C11orf95C9JLR9 678 aaPredicted RBP20.84■□□□□ 0.93
CBX3-202ENST00000396386 DCAF11Q8TEB1 546 aa20.84■□□□□ 0.93
CBX3-202ENST00000396386 HECW2Q9P2P5 1572 aa20.84■□□□□ 0.93
CBX3-202ENST00000396386 POGZQ7Z3K3 1410 aa20.84■□□□□ 0.93
CBX3-202ENST00000396386 KIF7Q2M1P5 1343 aa20.83■□□□□ 0.93
CBX3-202ENST00000396386 KANK1Q14678 1352 aa20.83■□□□□ 0.93
CBX3-202ENST00000396386 RNF17Q9BXT8 1623 aaKnown RBP20.82■□□□□ 0.92
CBX3-202ENST00000396386 DHX29Q7Z478 1369 aaKnown RBP20.82■□□□□ 0.92
CBX3-202ENST00000396386 KDM2AQ9Y2K7 1162 aa20.81■□□□□ 0.92
CBX3-202ENST00000396386 CLTCL1P53675 1640 aa20.8■□□□□ 0.92
CBX3-202ENST00000396386 MYT1LQ9UL68 1186 aa20.8■□□□□ 0.92
CBX3-202ENST00000396386 NEO1Q92859 1461 aa20.8■□□□□ 0.92
CBX3-202ENST00000396386 CARD11Q9BXL7 1154 aa20.79■□□□□ 0.92
CBX3-202ENST00000396386 MAP3K4Q9Y6R4 1608 aa20.79■□□□□ 0.92
CBX3-202ENST00000396386 ROCK2O75116 1388 aaKnown RBP20.79■□□□□ 0.92
CBX3-202ENST00000396386 PTPRTO14522 1441 aa20.78■□□□□ 0.92
CBX3-202ENST00000396386 ARID4BQ4LE39 1312 aaPredicted RBP20.78■□□□□ 0.92
CBX3-202ENST00000396386 MLH3Q9UHC1 1453 aa20.77■□□□□ 0.92
CBX3-202ENST00000396386 EFCAB6Q5THR3 1501 aa20.77■□□□□ 0.92
CBX3-202ENST00000396386 ABCA6Q8N139 1617 aa20.76■□□□□ 0.91
CBX3-202ENST00000396386 GPRASP1Q5JY77 1395 aa20.74■□□□□ 0.91
CBX3-202ENST00000396386 MADDQ8WXG6 1647 aa20.74■□□□□ 0.91
CBX3-202ENST00000396386 FRMPD1Q5SYB0 1578 aa20.74■□□□□ 0.91
CBX3-202ENST00000396386 PPRC1Q5VV67 1664 aaKnown RBP20.74■□□□□ 0.91
CBX3-202ENST00000396386 KIF3BO15066 747 aa20.74■□□□□ 0.91
CBX3-202ENST00000396386 RGL3Q3MIN7 710 aa20.74■□□□□ 0.91
CBX3-202ENST00000396386 NEURL4Q96JN8 1562 aa20.74■□□□□ 0.91
CBX3-202ENST00000396386 LMTK2Q8IWU2 1503 aa20.73■□□□□ 0.91
CBX3-202ENST00000396386 GLI2P10070 1586 aa20.73■□□□□ 0.91
CBX3-202ENST00000396386 RICTORQ6R327 1708 aa20.72■□□□□ 0.91
CBX3-202ENST00000396386 KIF13AQ9H1H9 1805 aa20.7■□□□□ 0.9
CBX3-202ENST00000396386 KIF1BO60333 1816 aa20.69■□□□□ 0.9
CBX3-202ENST00000396386 DIP2CQ9Y2E4 1556 aa20.67■□□□□ 0.9
CBX3-202ENST00000396386 PRKRIP1Q9H875 184 aaPredicted RBP20.67■□□□□ 0.9
CBX3-202ENST00000396386 IQGAP1P46940 1657 aa20.66■□□□□ 0.9
CBX3-202ENST00000396386 ST20-MTHFSA0A0A6YYL1 179 aa20.65■□□□□ 0.9
CBX3-202ENST00000396386 IFT172Q9UG01 1749 aa20.65■□□□□ 0.9
CBX3-202ENST00000396386 KIAA1210Q9ULL0 1709 aa20.64■□□□□ 0.9
CBX3-202ENST00000396386 DIP2BQ9P265 1576 aa20.64■□□□□ 0.89
CBX3-202ENST00000396386 MROH2AA6NES4 1674 aa20.63■□□□□ 0.89
CBX3-202ENST00000396386 POLR3GLQ9BT43 218 aa20.63■□□□□ 0.89
CBX3-202ENST00000396386 COL17A1Q9UMD9 1497 aaPredicted RBP20.62■□□□□ 0.89
CBX3-202ENST00000396386 CAMSAP1Q5T5Y3 1602 aa20.62■□□□□ 0.89
CBX3-202ENST00000396386 UGGT1Q9NYU2 1555 aa20.62■□□□□ 0.89
CBX3-202ENST00000396386 NBPF1Q3BBV0 1214 aa20.61■□□□□ 0.89
CBX3-202ENST00000396386 STAC3Q96MF2 364 aa20.6■□□□□ 0.89
CBX3-202ENST00000396386 ZC3H13Q5T200 1668 aaKnown RBP20.6■□□□□ 0.89
CBX3-202ENST00000396386 ABCC3O15438 1527 aa20.6■□□□□ 0.89
CBX3-202ENST00000396386 MYOM2P54296 1465 aa20.59■□□□□ 0.89
CBX3-202ENST00000396386 ADGRB3O60242 1522 aa20.57■□□□□ 0.88
CBX3-202ENST00000396386 ZMYM4Q5VZL5 1548 aa20.57■□□□□ 0.88
CBX3-202ENST00000396386 RAPGEF3O95398 923 aa20.54■□□□□ 0.88
CBX3-202ENST00000396386 NPATQ14207 1427 aa20.54■□□□□ 0.88
CBX3-202ENST00000396386 MRS2Q9HD23 443 aa20.53■□□□□ 0.88
CBX3-202ENST00000396386 TSPOAP1O95153 1857 aa20.52■□□□□ 0.87
CBX3-202ENST00000396386 CCDC184Q52MB2 194 aa20.52■□□□□ 0.87
CBX3-202ENST00000396386 PPLO60437 1756 aa20.51■□□□□ 0.87
CBX3-202ENST00000396386 SCAF11Q99590 1463 aaKnown RBP20.51■□□□□ 0.87
CBX3-202ENST00000396386 SIGLEC1Q9BZZ2 1709 aa20.51■□□□□ 0.87
CBX3-202ENST00000396386 HNRNPUQ00839 825 aaKnown RBP eCLIP20.5■□□□□ 0.87
CBX3-202ENST00000396386 TESK2Q96S53 571 aa20.5■□□□□ 0.87
CBX3-202ENST00000396386 DISP3Q9P2K9 1392 aa20.49■□□□□ 0.87
CBX3-202ENST00000396386 GGT6Q6P531 493 aa20.49■□□□□ 0.87
CBX3-202ENST00000396386 CFAP65Q6ZU64 1925 aaKnown RBP20.49■□□□□ 0.87
CBX3-202ENST00000396386 PIK3C2BO00750 1634 aa20.49■□□□□ 0.87
CBX3-202ENST00000396386 KTN1Q86UP2 1357 aaKnown RBP20.49■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 51.5 ms