RNA–Protein interactions for RNA: ENST00000380748.5

HMGN1-203, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 3 BASIC

Gene HMGN1, Length 829 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-203ENST00000380748 ZNF644Q9H582 1327 aaPredicted RBP28.35■■■□□ 2.13
HMGN1-203ENST00000380748 TNRQ92752 1358 aa28.34■■■□□ 2.13
HMGN1-203ENST00000380748 FBXO31Q5XUX0 539 aaPredicted RBP28.33■■■□□ 2.13
HMGN1-203ENST00000380748 MBD5Q9P267 1494 aa28.31■■■□□ 2.12
HMGN1-203ENST00000380748 VWDEQ8N2E2 1590 aa28.3■■■□□ 2.12
HMGN1-203ENST00000380748 TIAM1Q13009 1591 aa28.29■■■□□ 2.12
HMGN1-203ENST00000380748 MTUS2Q5JR59 1369 aa28.29■■■□□ 2.12
HMGN1-203ENST00000380748 DHX29Q7Z478 1369 aaKnown RBP28.29■■■□□ 2.12
HMGN1-203ENST00000380748 ALKQ9UM73 1620 aa28.29■■■□□ 2.12
HMGN1-203ENST00000380748 PZPP20742 1482 aa28.28■■■□□ 2.12
HMGN1-203ENST00000380748 RTEL1-TNFRSF6BF6WH68 1400 aa28.26■■■□□ 2.12
HMGN1-203ENST00000380748 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP28.26■■■□□ 2.12
HMGN1-203ENST00000380748 KDM5DQ9BY66 1539 aa28.26■■■□□ 2.11
HMGN1-203ENST00000380748 ANKLE2Q86XL3 938 aa28.24■■■□□ 2.11
HMGN1-203ENST00000380748 PHF23Q9BUL5 403 aaPredicted RBP28.24■■■□□ 2.11
HMGN1-203ENST00000380748 KIF3BO15066 747 aa28.23■■■□□ 2.11
HMGN1-203ENST00000380748 NPHP4O75161 1426 aaPredicted RBP28.21■■■□□ 2.11
HMGN1-203ENST00000380748 FAM135AQ9P2D6 1515 aa28.2■■■□□ 2.1
HMGN1-203ENST00000380748 MED14O60244 1454 aa28.19■■■□□ 2.1
HMGN1-203ENST00000380748 UGGT1Q9NYU2 1555 aa28.19■■■□□ 2.1
HMGN1-203ENST00000380748 MIA2Q96PC5 1412 aa28.18■■■□□ 2.1
HMGN1-203ENST00000380748 DEPDC5O75140 1603 aa28.18■■■□□ 2.1
HMGN1-203ENST00000380748 WASHC2CQ9Y4E1 1318 aa28.18■■■□□ 2.1
HMGN1-203ENST00000380748 NLRP1Q9C000 1473 aa28.17■■■□□ 2.1
HMGN1-203ENST00000380748 THEMISQ8N1K5 641 aaPredicted RBP28.17■■■□□ 2.1
HMGN1-203ENST00000380748 EHBP1L1Q8N3D4 1523 aa28.17■■■□□ 2.1
HMGN1-203ENST00000380748 SENP3Q9H4L4 574 aaPredicted RBP28.16■■■□□ 2.1
HMGN1-203ENST00000380748 IQGAP1P46940 1657 aa28.15■■■□□ 2.1
HMGN1-203ENST00000380748 CCDC141Q6ZP82 1450 aa28.15■■■□□ 2.1
HMGN1-203ENST00000380748 STRCP1A6NGW2 1772 aa28.14■■■□□ 2.1
HMGN1-203ENST00000380748 CEP162Q5TB80 1403 aa28.12■■■□□ 2.09
HMGN1-203ENST00000380748 LRRC7Q96NW7 1537 aa28.11■■■□□ 2.09
HMGN1-203ENST00000380748 RNF17Q9BXT8 1623 aaKnown RBP28.09■■■□□ 2.09
HMGN1-203ENST00000380748 CAMSAP2Q08AD1 1489 aa28.08■■■□□ 2.09
HMGN1-203ENST00000380748 SYNMO15061 1565 aa28.06■■■□□ 2.08
HMGN1-203ENST00000380748 ABCC3O15438 1527 aa28■■■□□ 2.07
HMGN1-203ENST00000380748 NCOA2Q15596 1464 aa28■■■□□ 2.07
HMGN1-203ENST00000380748 ZC3H13Q5T200 1668 aaKnown RBP28■■■□□ 2.07
HMGN1-203ENST00000380748 RSPH4AQ5TD94 716 aa27.99■■■□□ 2.07
HMGN1-203ENST00000380748 RGS17Q9UGC6 210 aaPredicted RBP27.99■■■□□ 2.07
HMGN1-203ENST00000380748 ERVK-7P63135 1459 aa27.97■■■□□ 2.07
HMGN1-203ENST00000380748 ARHGEF5Q12774 1597 aa27.97■■■□□ 2.07
HMGN1-203ENST00000380748 UBR1Q8IWV7 1749 aa27.92■■■□□ 2.06
HMGN1-203ENST00000380748 TSPY4P0CV99 314 aa27.92■■■□□ 2.06
HMGN1-203ENST00000380748 TSPY10P0CW01 314 aa27.92■■■□□ 2.06
HMGN1-203ENST00000380748 SCAF11Q99590 1463 aaKnown RBP27.91■■■□□ 2.06
HMGN1-203ENST00000380748 XIRP1Q702N8 1843 aaKnown RBP27.9■■■□□ 2.06
HMGN1-203ENST00000380748 MROH1Q8NDA8 1641 aa27.89■■■□□ 2.06
HMGN1-203ENST00000380748 CEP152O94986 1710 aa27.87■■■□□ 2.05
HMGN1-203ENST00000380748 CFAP65Q6ZU64 1925 aaKnown RBP27.87■■■□□ 2.05
HMGN1-203ENST00000380748 EIF2AK4Q9P2K8 1649 aaKnown RBP27.86■■■□□ 2.05
HMGN1-203ENST00000380748 LTKP29376 864 aa27.86■■■□□ 2.05
HMGN1-203ENST00000380748 MAST1Q9Y2H9 1570 aa27.86■■■□□ 2.05
HMGN1-203ENST00000380748 ARHGAP23Q9P227 1491 aa27.84■■■□□ 2.05
HMGN1-203ENST00000380748 SLIT1O75093 1534 aa27.82■■■□□ 2.04
HMGN1-203ENST00000380748 TXNDC2Q86VQ3 553 aa27.82■■■□□ 2.04
HMGN1-203ENST00000380748 POTEAQ6S8J7 498 aa27.79■■■□□ 2.04
HMGN1-203ENST00000380748 FAM135BQ49AJ0 1406 aa27.78■■■□□ 2.04
HMGN1-203ENST00000380748 EID1Q9Y6B2 187 aa27.73■■■□□ 2.03
HMGN1-203ENST00000380748 TMEM94Q12767 1356 aa27.72■■■□□ 2.03
HMGN1-203ENST00000380748 PIK3C2BO00750 1634 aa27.71■■■□□ 2.03
HMGN1-203ENST00000380748 ARHGAP31Q2M1Z3 1444 aa27.71■■■□□ 2.03
HMGN1-203ENST00000380748 ROBO1Q9Y6N7 1651 aa27.71■■■□□ 2.03
HMGN1-203ENST00000380748 DUOX2Q9NRD8 1548 aa27.71■■■□□ 2.03
HMGN1-203ENST00000380748 PRDM15P57071 1507 aaPredicted RBP27.7■■■□□ 2.02
HMGN1-203ENST00000380748 LRRC9Q6ZRR7 1453 aa27.7■■■□□ 2.02
HMGN1-203ENST00000380748 TMEM2Q9UHN6 1383 aa27.69■■■□□ 2.02
HMGN1-203ENST00000380748 MAP3K1Q13233 1512 aa27.68■■■□□ 2.02
HMGN1-203ENST00000380748 SETD1AO15047 1707 aaKnown RBP27.66■■■□□ 2.02
HMGN1-203ENST00000380748 RBM33Q96EV2 1170 aaKnown RBP27.65■■■□□ 2.02
HMGN1-203ENST00000380748 KIF15Q9NS87 1388 aa27.62■■■□□ 2.01
HMGN1-203ENST00000380748 KCNA6P17658 529 aa27.62■■■□□ 2.01
HMGN1-203ENST00000380748 EFCAB6Q5THR3 1501 aa27.62■■■□□ 2.01
HMGN1-203ENST00000380748 MYOM3Q5VTT5 1437 aa27.61■■■□□ 2.01
HMGN1-203ENST00000380748 STAG3Q9UJ98 1225 aa27.61■■■□□ 2.01
HMGN1-203ENST00000380748 TET3O43151 1660 aa27.6■■■□□ 2.01
HMGN1-203ENST00000380748 PROSER2Q86WR7 435 aaPredicted RBP27.6■■■□□ 2.01
HMGN1-203ENST00000380748 SLC26A8Q96RN1 970 aa27.6■■■□□ 2.01
HMGN1-203ENST00000380748 ERBINQ96RT1 1412 aa27.59■■■□□ 2.01
HMGN1-203ENST00000380748 GRWD1Q9BQ67 446 aaKnown RBP eCLIP27.59■■■□□ 2.011e-6■■□□□ 12.8
HMGN1-203ENST00000380748 KDM5AP29375 1690 aaKnown RBP27.58■■■□□ 2.01
HMGN1-203ENST00000380748 KANK4Q5T7N3 995 aaPredicted RBP27.57■■■□□ 2
HMGN1-203ENST00000380748 IDI1Q13907 227 aa27.56■■■□□ 2
HMGN1-203ENST00000380748 RRP7BPQ9NSQ0 103 aa27.56■■■□□ 2
HMGN1-203ENST00000380748 NWD1Q149M9 1564 aa27.55■■■□□ 2
HMGN1-203ENST00000380748 CROCC2H7BZ55 1655 aa27.55■■■□□ 2
HMGN1-203ENST00000380748 PHLPP1O60346 1717 aa27.55■■■□□ 2
HMGN1-203ENST00000380748 NKTRP30414 1462 aaKnown RBP27.54■■■□□ 2
HMGN1-203ENST00000380748 VPS8Q8N3P4 1428 aa27.54■■■□□ 2
HMGN1-203ENST00000380748 ABCC5O15440 1437 aa27.52■■■□□ 2
HMGN1-203ENST00000380748 MSH6P52701 1360 aa27.5■■□□□ 1.99
HMGN1-203ENST00000380748 KANK1Q14678 1352 aa27.5■■□□□ 1.99
HMGN1-203ENST00000380748 JCADQ9P266 1359 aa27.5■■□□□ 1.99
HMGN1-203ENST00000380748 SLAIN2Q9P270 581 aa27.49■■□□□ 1.99
HMGN1-203ENST00000380748 ADGRB3O60242 1522 aa27.49■■□□□ 1.99
HMGN1-203ENST00000380748 LMTK2Q8IWU2 1503 aa27.48■■□□□ 1.99
HMGN1-203ENST00000380748 COL16A1Q07092 1604 aaPredicted RBP27.45■■□□□ 1.98
HMGN1-203ENST00000380748 NOS1P29475 1434 aa27.44■■□□□ 1.98
HMGN1-203ENST00000380748 LRP6O75581 1613 aa27.43■■□□□ 1.98
HMGN1-203ENST00000380748 PTPN23Q9H3S7 1636 aa27.43■■□□□ 1.98
Retrieved 100 of 20,778 RNA–protein pairs in 9.1 ms