RNA–Protein interactions for RNA: ENST00000378825.4

CCDC3-201, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC3, Length 2,731 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-201ENST00000378825 KIF15Q9NS87 1388 aa24.68■■□□□ 1.54
CCDC3-201ENST00000378825 NUP155O75694 1391 aa24.67■■□□□ 1.54
CCDC3-201ENST00000378825 PLIN1O60240 522 aa24.67■■□□□ 1.54
CCDC3-201ENST00000378825 TSPY4P0CV99 314 aa24.66■■□□□ 1.54
CCDC3-201ENST00000378825 TSPY10P0CW01 314 aa24.66■■□□□ 1.54
CCDC3-201ENST00000378825 PTPRGP23470 1445 aa24.66■■□□□ 1.54
CCDC3-201ENST00000378825 MYBBP1AQ9BQG0 1328 aaKnown RBP24.66■■□□□ 1.54
CCDC3-201ENST00000378825 ADGRL2O95490 1459 aa24.66■■□□□ 1.54
CCDC3-201ENST00000378825 ABCC10Q5T3U5 1492 aa24.66■■□□□ 1.54
CCDC3-201ENST00000378825 PDE4AP27815 886 aa24.66■■□□□ 1.54
CCDC3-201ENST00000378825 IL27Q8NEV9 243 aa24.66■■□□□ 1.54
CCDC3-201ENST00000378825 C9orf84Q5VXU9 1444 aa24.65■■□□□ 1.54
CCDC3-201ENST00000378825 ADGBQ8N7X0 1667 aa24.65■■□□□ 1.54
CCDC3-201ENST00000378825 CDC42BPAQ5VT25 1732 aa24.64■■□□□ 1.54
CCDC3-201ENST00000378825 DCAF11Q8TEB1 546 aa24.64■■□□□ 1.54
CCDC3-201ENST00000378825 ARID4BQ4LE39 1312 aaPredicted RBP24.63■■□□□ 1.53
CCDC3-201ENST00000378825 RALGAPBQ86X10 1494 aa24.62■■□□□ 1.53
CCDC3-201ENST00000378825 CROCC2H7BZ55 1655 aa24.62■■□□□ 1.53
CCDC3-201ENST00000378825 BRD4O60885 1362 aaPredicted RBP24.62■■□□□ 1.53
CCDC3-201ENST00000378825 RTN4Q9NQC3 1192 aaKnown RBP24.61■■□□□ 1.53
CCDC3-201ENST00000378825 ROCK2O75116 1388 aaKnown RBP24.61■■□□□ 1.53
CCDC3-201ENST00000378825 BACH2Q9BYV9 841 aa24.58■■□□□ 1.53
CCDC3-201ENST00000378825 UHRF1BP1Q6BDS2 1440 aa24.58■■□□□ 1.53
CCDC3-201ENST00000378825 NEFMP07197 916 aa24.57■■□□□ 1.52
CCDC3-201ENST00000378825 ANO8Q9HCE9 1232 aaPredicted RBP24.57■■□□□ 1.52
CCDC3-201ENST00000378825 TCERG1O14776 1098 aaKnown RBP24.57■■□□□ 1.52
CCDC3-201ENST00000378825 RALBP1Q15311 655 aa24.56■■□□□ 1.52
CCDC3-201ENST00000378825 CC2D1BQ5T0F9 858 aaKnown RBP24.53■■□□□ 1.52
CCDC3-201ENST00000378825 NBPF1Q3BBV0 1214 aa24.52■■□□□ 1.52
CCDC3-201ENST00000378825 NLRP13Q86W25 1043 aa24.51■■□□□ 1.51
CCDC3-201ENST00000378825 RGL3Q3MIN7 710 aa24.5■■□□□ 1.51
CCDC3-201ENST00000378825 CRBNQ96SW2 442 aa24.5■■□□□ 1.51
CCDC3-201ENST00000378825 GRWD1Q9BQ67 446 aaKnown RBP eCLIP24.49■■□□□ 1.51
CCDC3-201ENST00000378825 SHANK2Q9UPX8 1470 aa24.49■■□□□ 1.51
CCDC3-201ENST00000378825 C20orf194Q5TEA3 1177 aa24.48■■□□□ 1.51
CCDC3-201ENST00000378825 E9PCH4 1651 aa24.48■■□□□ 1.51
CCDC3-201ENST00000378825 PER1O15534 1290 aaPredicted RBP24.47■■□□□ 1.51
CCDC3-201ENST00000378825 SLC4A3P48751 1232 aa24.47■■□□□ 1.51
CCDC3-201ENST00000378825 PARD3Q8TEW0 1356 aa24.47■■□□□ 1.51
CCDC3-201ENST00000378825 KTN1Q86UP2 1357 aaKnown RBP24.47■■□□□ 1.51
CCDC3-201ENST00000378825 CHD1O14646 1710 aa24.45■■□□□ 1.51
CCDC3-201ENST00000378825 ERCC6L2Q5T890 1561 aa24.45■■□□□ 1.5
CCDC3-201ENST00000378825 SAMD9LQ8IVG5 1584 aa24.45■■□□□ 1.5
CCDC3-201ENST00000378825 ARHGEF12Q9NZN5 1544 aa24.43■■□□□ 1.5
CCDC3-201ENST00000378825 CCDC141Q6ZP82 1450 aa24.42■■□□□ 1.5
CCDC3-201ENST00000378825 CDC42BPBQ9Y5S2 1711 aa24.41■■□□□ 1.5
CCDC3-201ENST00000378825 MS4A1P11836 297 aa24.41■■□□□ 1.5
CCDC3-201ENST00000378825 PDE3BQ13370 1112 aa24.4■■□□□ 1.5
CCDC3-201ENST00000378825 DISP3Q9P2K9 1392 aa24.39■■□□□ 1.5
CCDC3-201ENST00000378825 SYCP2Q9BX26 1530 aa24.39■■□□□ 1.5
CCDC3-201ENST00000378825 ARHGAP5Q13017 1502 aa24.39■■□□□ 1.49
CCDC3-201ENST00000378825 TTC37Q6PGP7 1564 aa24.37■■□□□ 1.49
CCDC3-201ENST00000378825 PANK3Q9H999 370 aa24.37■■□□□ 1.49
CCDC3-201ENST00000378825 ARHGEF5Q12774 1597 aa24.37■■□□□ 1.49
CCDC3-201ENST00000378825 PREX2Q70Z35 1606 aa24.35■■□□□ 1.49
CCDC3-201ENST00000378825 KDM5DQ9BY66 1539 aa24.35■■□□□ 1.49
CCDC3-201ENST00000378825 PRAG1Q86YV5 1406 aa24.34■■□□□ 1.49
CCDC3-201ENST00000378825 FAM135AQ9P2D6 1515 aa24.34■■□□□ 1.49
CCDC3-201ENST00000378825 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP24.33■■□□□ 1.49
CCDC3-201ENST00000378825 TESK2Q96S53 571 aa24.33■■□□□ 1.49
CCDC3-201ENST00000378825 PRKCSHP14314 528 aaPredicted RBP24.32■■□□□ 1.48
CCDC3-201ENST00000378825 ADAMTS8Q9UP79 889 aa24.32■■□□□ 1.48
CCDC3-201ENST00000378825 RSPH4AQ5TD94 716 aa24.31■■□□□ 1.48
CCDC3-201ENST00000378825 BRPF3Q9ULD4 1205 aa24.31■■□□□ 1.48
CCDC3-201ENST00000378825 USP35Q9P2H5 1018 aa24.3■■□□□ 1.48
CCDC3-201ENST00000378825 TRPM1Q7Z4N2 1603 aa24.3■■□□□ 1.48
CCDC3-201ENST00000378825 PPM1GO15355 546 aaPredicted RBP24.29■■□□□ 1.48
CCDC3-201ENST00000378825 BLMP54132 1417 aaPredicted RBP24.29■■□□□ 1.48
CCDC3-201ENST00000378825 CCDC144AA2RUR9 1427 aa24.28■■□□□ 1.48
CCDC3-201ENST00000378825 PLEKHH2Q8IVE3 1493 aa24.28■■□□□ 1.48
CCDC3-201ENST00000378825 ZBTB4Q9P1Z0 1013 aaPredicted RBP24.28■■□□□ 1.48
CCDC3-201ENST00000378825 WASHC2CQ9Y4E1 1318 aa24.28■■□□□ 1.48
CCDC3-201ENST00000378825 NFKBIBQ15653 356 aa24.27■■□□□ 1.48
CCDC3-201ENST00000378825 KDM2BQ8NHM5 1336 aa24.26■■□□□ 1.47
CCDC3-201ENST00000378825 COL17A1Q9UMD9 1497 aaPredicted RBP24.25■■□□□ 1.47
CCDC3-201ENST00000378825 ABCC2Q92887 1545 aa24.25■■□□□ 1.47
CCDC3-201ENST00000378825 PLEKHH1Q9ULM0 1364 aa24.25■■□□□ 1.47
CCDC3-201ENST00000378825 SHROOM2Q13796 1616 aa24.25■■□□□ 1.47
CCDC3-201ENST00000378825 PLA2R1Q13018 1463 aa24.24■■□□□ 1.47
CCDC3-201ENST00000378825 A2MP01023 1474 aa24.23■■□□□ 1.47
CCDC3-201ENST00000378825 RGS3P49796 1198 aa24.21■■□□□ 1.47
CCDC3-201ENST00000378825 DDRGK1Q96HY6 314 aa24.2■■□□□ 1.47
CCDC3-201ENST00000378825 ERBINQ96RT1 1412 aa24.2■■□□□ 1.46
CCDC3-201ENST00000378825 C8orf34Q49A92 452 aa24.2■■□□□ 1.46
CCDC3-201ENST00000378825 DUSP27Q5VZP5 1158 aa24.2■■□□□ 1.46
CCDC3-201ENST00000378825 ZMYM4Q5VZL5 1548 aa24.19■■□□□ 1.46
CCDC3-201ENST00000378825 GSE1Q14687 1217 aa24.19■■□□□ 1.46
CCDC3-201ENST00000378825 FRAT1Q92837 279 aaPredicted RBP24.19■■□□□ 1.46
CCDC3-201ENST00000378825 GPRASP1Q5JY77 1395 aa24.17■■□□□ 1.46
CCDC3-201ENST00000378825 EFCAB2Q5VUJ9 269 aa24.17■■□□□ 1.46
CCDC3-201ENST00000378825 MYO5CQ9NQX4 1742 aa24.16■■□□□ 1.46
CCDC3-201ENST00000378825 AFAP1Q8N556 730 aa24.16■■□□□ 1.46
CCDC3-201ENST00000378825 TMF1P82094 1093 aa24.15■■□□□ 1.46
CCDC3-201ENST00000378825 CCDC146Q8IYE0 955 aa24.15■■□□□ 1.46
CCDC3-201ENST00000378825 TRAPPC8Q9Y2L5 1435 aa24.15■■□□□ 1.46
CCDC3-201ENST00000378825 PPP2R1AP30153 589 aa24.14■■□□□ 1.45
CCDC3-201ENST00000378825 SPINK5Q9NQ38 1064 aaPredicted RBP24.14■■□□□ 1.45
CCDC3-201ENST00000378825 PRDM15P57071 1507 aaPredicted RBP24.14■■□□□ 1.45
CCDC3-201ENST00000378825 CENPQQ7L2Z9 268 aaPredicted RBP24.13■■□□□ 1.45
CCDC3-201ENST00000378825 PLCH2O75038 1416 aa24.13■■□□□ 1.45
Retrieved 100 of 20,778 RNA–protein pairs in 9.3 ms