RNA–Protein interactions for RNA: ENST00000378825.4

CCDC3-201, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC3, Length 2,731 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-201ENST00000378825 NISCHQ9Y2I1 1504 aa37.22■■■■□ 3.55
CCDC3-201ENST00000378825 SHROOM4Q9ULL8 1493 aa32.14■■■□□ 2.74
CCDC3-201ENST00000378825 SUPT5HO00267 1087 aaKnown RBP31.74■■■□□ 2.67
CCDC3-201ENST00000378825 CCDC180Q9P1Z9 1646 aa31.55■■■□□ 2.64
CCDC3-201ENST00000378825 ZCCHC6Q5VYS8 1495 aaKnown RBP31.43■■■□□ 2.62
CCDC3-201ENST00000378825 DCAF8L2P0C7V8 631 aa31.3■■■□□ 2.6
CCDC3-201ENST00000378825 MYO15BQ96JP2 1530 aa31.12■■■□□ 2.57
CCDC3-201ENST00000378825 HRCP23327 699 aa30.97■■■□□ 2.55
CCDC3-201ENST00000378825 CHIC1Q5VXU3 224 aa30.95■■■□□ 2.54
CCDC3-201ENST00000378825 PCGF6Q9BYE7 350 aa30.77■■■□□ 2.52
CCDC3-201ENST00000378825 PPARGC1BQ86YN6 1023 aaKnown RBP30.62■■■□□ 2.49
CCDC3-201ENST00000378825 DCAF1Q9Y4B6 1507 aa30.38■■■□□ 2.45
CCDC3-201ENST00000378825 LOC105371045A0A1W2PR82 267 aa30.31■■■□□ 2.44
CCDC3-201ENST00000378825 SCRIBQ14160 1630 aa29.82■■■□□ 2.36
CCDC3-201ENST00000378825 TRIM26Q12899 539 aaPredicted RBP29.75■■■□□ 2.35
CCDC3-201ENST00000378825 ABCC9O60706 1549 aa29.71■■■□□ 2.35
CCDC3-201ENST00000378825 RSF1Q96T23 1441 aaPredicted RBP29.46■■■□□ 2.31
CCDC3-201ENST00000378825 FAM9AQ8IZU1 332 aaPredicted RBP29.41■■■□□ 2.3
CCDC3-201ENST00000378825 EHMT2Q96KQ7 1210 aa29.38■■■□□ 2.29
CCDC3-201ENST00000378825 TRIM41Q8WV44 630 aa29.29■■■□□ 2.28
CCDC3-201ENST00000378825 NACADO15069 1562 aa29.28■■■□□ 2.28
CCDC3-201ENST00000378825 CECR2Q9BXF3 1484 aa29.19■■■□□ 2.26
CCDC3-201ENST00000378825 RB1CC1Q8TDY2 1594 aa29.15■■■□□ 2.26
CCDC3-201ENST00000378825 ZEB1P37275 1124 aaPredicted RBP29.14■■■□□ 2.26
CCDC3-201ENST00000378825 SCAF1Q9H7N4 1312 aaKnown RBP29.09■■■□□ 2.25
CCDC3-201ENST00000378825 MROH2BQ7Z745 1585 aa29.01■■■□□ 2.24
CCDC3-201ENST00000378825 WIZO95785 1651 aa28.85■■■□□ 2.21
CCDC3-201ENST00000378825 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP28.75■■■□□ 2.19
CCDC3-201ENST00000378825 PELP1Q8IZL8 1130 aaKnown RBP28.67■■■□□ 2.18
CCDC3-201ENST00000378825 BAZ1AQ9NRL2 1556 aaPredicted RBP28.57■■■□□ 2.16
CCDC3-201ENST00000378825 CCER1Q8TC90 406 aaPredicted RBP28.56■■■□□ 2.16
CCDC3-201ENST00000378825 TTBK1Q5TCY1 1321 aaPredicted RBP28.54■■■□□ 2.16
CCDC3-201ENST00000378825 NEUROD1Q13562 356 aa28.51■■■□□ 2.16
CCDC3-201ENST00000378825 PABPN1Q86U42 306 aaKnown RBP eCLIP28.5■■■□□ 2.15
CCDC3-201ENST00000378825 UNC13AQ9UPW8 1703 aa28.46■■■□□ 2.15
CCDC3-201ENST00000378825 ACIN1Q9UKV3 1341 aaKnown RBP28.44■■■□□ 2.14
CCDC3-201ENST00000378825 SMARCA4P51532 1647 aa28.37■■■□□ 2.13
CCDC3-201ENST00000378825 DIEXFQ68CQ4 756 aaKnown RBP28.3■■■□□ 2.12
CCDC3-201ENST00000378825 TOP2AP11388 1531 aaKnown RBP28.29■■■□□ 2.12
CCDC3-201ENST00000378825 CCDC88BA6NC98 1476 aa28.27■■■□□ 2.12
CCDC3-201ENST00000378825 GTF3C3Q9Y5Q9 886 aa28.26■■■□□ 2.11
CCDC3-201ENST00000378825 EIF4G1Q04637 1599 aaKnown RBP28.25■■■□□ 2.11
CCDC3-201ENST00000378825 ABCC8Q09428 1581 aa28.21■■■□□ 2.11
CCDC3-201ENST00000378825 SMARCA2P51531 1590 aa28.17■■■□□ 2.1
CCDC3-201ENST00000378825 BICRAQ9NZM4 1560 aa28.15■■■□□ 2.1
CCDC3-201ENST00000378825 CEP162Q5TB80 1403 aa28.05■■■□□ 2.08
CCDC3-201ENST00000378825 CENPBP07199 599 aaPredicted RBP28.03■■■□□ 2.08
CCDC3-201ENST00000378825 SOGA1O94964 1423 aa28.02■■■□□ 2.08
CCDC3-201ENST00000378825 WRNQ14191 1432 aaPredicted RBP eCLIP27.98■■■□□ 2.07
CCDC3-201ENST00000378825 YTHDC1Q96MU7 727 aaKnown RBP27.92■■■□□ 2.06
CCDC3-201ENST00000378825 RUSC2Q8N2Y8 1516 aa27.92■■■□□ 2.06
CCDC3-201ENST00000378825 UBTFP17480 764 aaKnown RBP27.88■■■□□ 2.05
CCDC3-201ENST00000378825 ZNF316A6NFI3 1004 aaPredicted RBP27.85■■■□□ 2.05
CCDC3-201ENST00000378825 TNIKQ9UKE5 1360 aa27.82■■■□□ 2.04
CCDC3-201ENST00000378825 CSRNP3Q8WYN3 585 aa27.79■■■□□ 2.04
CCDC3-201ENST00000378825 HNRNPUL2Q1KMD3 747 aaKnown RBP27.75■■■□□ 2.03
CCDC3-201ENST00000378825 ATAD2BQ9ULI0 1458 aa27.73■■■□□ 2.03
CCDC3-201ENST00000378825 PEG3Q9GZU2 1588 aa27.73■■■□□ 2.03
CCDC3-201ENST00000378825 MIER1Q8N108 512 aa27.72■■■□□ 2.03
CCDC3-201ENST00000378825 BAZ1BQ9UIG0 1483 aaKnown RBP27.66■■■□□ 2.02
CCDC3-201ENST00000378825 GOLGA3Q08378 1498 aa27.56■■■□□ 2
CCDC3-201ENST00000378825 SYNJ1O43426 1573 aa27.55■■■□□ 2
CCDC3-201ENST00000378825 EEA1Q15075 1411 aa27.53■■■□□ 2
CCDC3-201ENST00000378825 RANGAP1P46060 587 aaPredicted RBP27.51■■□□□ 1.99
CCDC3-201ENST00000378825 CLIP1P30622 1438 aa27.37■■□□□ 1.97
CCDC3-201ENST00000378825 CEP164Q9UPV0 1460 aa27.3■■□□□ 1.96
CCDC3-201ENST00000378825 VPS8Q8N3P4 1428 aa27.26■■□□□ 1.95
CCDC3-201ENST00000378825 RAPGEF2Q9Y4G8 1499 aa27.24■■□□□ 1.95
CCDC3-201ENST00000378825 MYT1Q01538 1121 aa27.23■■□□□ 1.95
CCDC3-201ENST00000378825 APLP2Q06481 763 aa27.23■■□□□ 1.95
CCDC3-201ENST00000378825 KIF21BO75037 1637 aa27.21■■□□□ 1.95
CCDC3-201ENST00000378825 NCAPD3P42695 1498 aa27.16■■□□□ 1.94
CCDC3-201ENST00000378825 TOP2BQ02880 1626 aa27.13■■□□□ 1.93
CCDC3-201ENST00000378825 HMGXB3Q12766 1538 aa27.08■■□□□ 1.93
CCDC3-201ENST00000378825 DHX57Q6P158 1386 aaKnown RBP27.06■■□□□ 1.92
CCDC3-201ENST00000378825 KANK4Q5T7N3 995 aaPredicted RBP27.03■■□□□ 1.92
CCDC3-201ENST00000378825 SUPT16HQ9Y5B9 1047 aaKnown RBP27.01■■□□□ 1.91
CCDC3-201ENST00000378825 CUX1P39880 1505 aa27■■□□□ 1.91
CCDC3-201ENST00000378825 BIVM-ERCC5R4GMW8 1640 aa26.99■■□□□ 1.91
CCDC3-201ENST00000378825 CFTRP13569 1480 aa26.92■■□□□ 1.9
CCDC3-201ENST00000378825 KCNH8Q96L42 1107 aa26.88■■□□□ 1.89
CCDC3-201ENST00000378825 PRXQ9BXM0 1461 aa26.87■■□□□ 1.89
CCDC3-201ENST00000378825 ARAP1Q96P48 1450 aa26.87■■□□□ 1.89
CCDC3-201ENST00000378825 ITGAEP38570 1179 aa26.86■■□□□ 1.89
CCDC3-201ENST00000378825 CLSPNQ9HAW4 1339 aa26.82■■□□□ 1.88
CCDC3-201ENST00000378825 KIF27Q86VH2 1401 aa26.82■■□□□ 1.88
CCDC3-201ENST00000378825 ERICH3Q5RHP9 1530 aa26.76■■□□□ 1.87
CCDC3-201ENST00000378825 TSHZ2Q9NRE2 1034 aa26.74■■□□□ 1.87
CCDC3-201ENST00000378825 CADPSQ9ULU8 1353 aa26.7■■□□□ 1.87
CCDC3-201ENST00000378825 RRBP1Q9P2E9 1410 aaKnown RBP26.68■■□□□ 1.86
CCDC3-201ENST00000378825 CUX2O14529 1486 aa26.67■■□□□ 1.86
CCDC3-201ENST00000378825 BCANQ96GW7 911 aa26.66■■□□□ 1.86
CCDC3-201ENST00000378825 CC2D2AQ9P2K1 1620 aa26.63■■□□□ 1.85
CCDC3-201ENST00000378825 CCNB3Q8WWL7 1395 aa26.63■■□□□ 1.85
CCDC3-201ENST00000378825 IGF1RP08069 1367 aa26.59■■□□□ 1.85
CCDC3-201ENST00000378825 FGD5Q6ZNL6 1462 aa26.56■■□□□ 1.84
CCDC3-201ENST00000378825 RAB3GAP2Q9H2M9 1393 aa26.55■■□□□ 1.84
CCDC3-201ENST00000378825 ARHGAP35Q9NRY4 1499 aa26.55■■□□□ 1.84
CCDC3-201ENST00000378825 PRDM2Q13029 1718 aa26.52■■□□□ 1.84
CCDC3-201ENST00000378825 DDX10Q13206 875 aaKnown RBP26.52■■□□□ 1.84
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms