RNA–Protein interactions for RNA: ENST00000373019.4

SF3A3-201, Transcript of splicing factor 3a subunit 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3A3, Length 3,673 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A3-201ENST00000373019 L3MBTL2Q969R5 705 aa12.41□□□□□ -0.42
SF3A3-201ENST00000373019 ARXQ96QS3 562 aa12.41□□□□□ -0.42
SF3A3-201ENST00000373019 CRBNQ96SW2 442 aa12.41□□□□□ -0.42
SF3A3-201ENST00000373019 NBPF8Q3BBV2 869 aa12.4□□□□□ -0.42
SF3A3-201ENST00000373019 GOLGA6L3A6NEY3 463 aa12.4□□□□□ -0.43
SF3A3-201ENST00000373019 USP19O94966 1318 aa12.4□□□□□ -0.43
SF3A3-201ENST00000373019 KTN1Q86UP2 1357 aaKnown RBP12.39□□□□□ -0.43
SF3A3-201ENST00000373019 ESPNB1AK53 854 aa12.39□□□□□ -0.43
SF3A3-201ENST00000373019 TPM2P07951 284 aa12.39□□□□□ -0.43
SF3A3-201ENST00000373019 ANTXR1Q9H6X2 564 aa12.39□□□□□ -0.43
SF3A3-201ENST00000373019 RIMBP3CA6NJZ7 1639 aa12.38□□□□□ -0.43
SF3A3-201ENST00000373019 RIMBP3BA6NNM3 1639 aa12.38□□□□□ -0.43
SF3A3-201ENST00000373019 RIMBP3Q9UFD9 1639 aa12.38□□□□□ -0.43
SF3A3-201ENST00000373019 FGD6Q6ZV73 1430 aa12.38□□□□□ -0.43
SF3A3-201ENST00000373019 PCF11O94913 1555 aaKnown RBP12.37□□□□□ -0.43
SF3A3-201ENST00000373019 TMC1Q8TDI8 760 aa12.37□□□□□ -0.43
SF3A3-201ENST00000373019 FMN1Q68DA7 1419 aa12.36□□□□□ -0.43
SF3A3-201ENST00000373019 CDCA7LQ96GN5 454 aa12.36□□□□□ -0.43
SF3A3-201ENST00000373019 CTTNBP2Q8WZ74 1663 aa12.36□□□□□ -0.43
SF3A3-201ENST00000373019 C20orf194Q5TEA3 1177 aa12.35□□□□□ -0.43
SF3A3-201ENST00000373019 SLKQ9H2G2 1235 aaPredicted RBP12.35□□□□□ -0.43
SF3A3-201ENST00000373019 BCORL1Q5H9F3 1711 aa12.35□□□□□ -0.43
SF3A3-201ENST00000373019 PLPPR3Q6T4P5 718 aa12.35□□□□□ -0.43
SF3A3-201ENST00000373019 UGGT2Q9NYU1 1516 aa12.35□□□□□ -0.43
SF3A3-201ENST00000373019 FHOD3Q2V2M9 1422 aa12.34□□□□□ -0.43
SF3A3-201ENST00000373019 CENPQQ7L2Z9 268 aaPredicted RBP12.34□□□□□ -0.43
SF3A3-201ENST00000373019 VIRMAQ69YN4 1812 aaKnown RBP12.33□□□□□ -0.44
SF3A3-201ENST00000373019 HECW1Q76N89 1606 aa12.33□□□□□ -0.44
SF3A3-201ENST00000373019 RIPK4P57078 832 aa12.32□□□□□ -0.44
SF3A3-201ENST00000373019 PDE3BQ13370 1112 aa12.32□□□□□ -0.44
SF3A3-201ENST00000373019 BCL11BQ9C0K0 894 aaPredicted RBP12.32□□□□□ -0.44
SF3A3-201ENST00000373019 GZF1Q9H116 711 aaPredicted RBP12.32□□□□□ -0.44
SF3A3-201ENST00000373019 MRE11P49959 708 aa12.31□□□□□ -0.44
SF3A3-201ENST00000373019 KIAA1211Q6ZU35 1233 aa12.31□□□□□ -0.44
SF3A3-201ENST00000373019 PLEKHD1A6NEE1 506 aa12.31□□□□□ -0.44
SF3A3-201ENST00000373019 ERCC6L2Q5T890 1561 aa12.3□□□□□ -0.44
SF3A3-201ENST00000373019 SEC24BO95487 1268 aa12.3□□□□□ -0.44
SF3A3-201ENST00000373019 TEX14Q8IWB6 1497 aa12.3□□□□□ -0.44
SF3A3-201ENST00000373019 MYH16Q9H6N6 1097 aa12.3□□□□□ -0.44
SF3A3-201ENST00000373019 EFCAB5A4FU69 1503 aa12.3□□□□□ -0.44
SF3A3-201ENST00000373019 BRD4O60885 1362 aaPredicted RBP12.3□□□□□ -0.44
SF3A3-201ENST00000373019 NLRP1Q9C000 1473 aa12.29□□□□□ -0.44
SF3A3-201ENST00000373019 MIA2Q96PC5 1412 aa12.29□□□□□ -0.44
SF3A3-201ENST00000373019 SHROOM2Q13796 1616 aa12.29□□□□□ -0.44
SF3A3-201ENST00000373019 GRPEL1Q9HAV7 217 aa12.29□□□□□ -0.44
SF3A3-201ENST00000373019 KIAA0556O60303 1618 aa12.29□□□□□ -0.44
SF3A3-201ENST00000373019 DISP1Q96F81 1524 aa12.28□□□□□ -0.44
SF3A3-201ENST00000373019 KDM6BO15054 1643 aa12.28□□□□□ -0.44
SF3A3-201ENST00000373019 MCM4P33991 863 aa12.28□□□□□ -0.44
SF3A3-201ENST00000373019 PDIA4P13667 645 aaKnown RBP12.27□□□□□ -0.44
SF3A3-201ENST00000373019 FOXD1Q16676 465 aa12.27□□□□□ -0.44
SF3A3-201ENST00000373019 SMAP1Q8IYB5 467 aaPredicted RBP12.27□□□□□ -0.45
SF3A3-201ENST00000373019 GTF2E1P29083 439 aaPredicted RBP12.26□□□□□ -0.45
SF3A3-201ENST00000373019 RPRD2Q5VT52 1461 aaKnown RBP12.26□□□□□ -0.45
SF3A3-201ENST00000373019 FAM69CQ0P6D2 419 aa12.25□□□□□ -0.45
SF3A3-201ENST00000373019 MPHOSPH9Q99550 1183 aa12.25□□□□□ -0.45
SF3A3-201ENST00000373019 MYBBP1AQ9BQG0 1328 aaKnown RBP12.25□□□□□ -0.45
SF3A3-201ENST00000373019 BECN1Q14457 450 aa12.25□□□□□ -0.45
SF3A3-201ENST00000373019 ZHX1Q9UKY1 873 aaPredicted RBP12.25□□□□□ -0.45
SF3A3-201ENST00000373019 TRAK2O60296 914 aa12.25□□□□□ -0.45
SF3A3-201ENST00000373019 POLR3GLQ9BT43 218 aa12.24□□□□□ -0.45
SF3A3-201ENST00000373019 PLB1Q6P1J6 1458 aa12.24□□□□□ -0.45
SF3A3-201ENST00000373019 FYCO1Q9BQS8 1478 aa12.24□□□□□ -0.45
SF3A3-201ENST00000373019 BBXQ8WY36 941 aaPredicted RBP12.24□□□□□ -0.45
SF3A3-201ENST00000373019 GCC2Q8IWJ2 1684 aa12.24□□□□□ -0.45
SF3A3-201ENST00000373019 OFD1O75665 1012 aa12.23□□□□□ -0.45
SF3A3-201ENST00000373019 RRP7BPQ9NSQ0 103 aa12.23□□□□□ -0.45
SF3A3-201ENST00000373019 ZNF777Q9ULD5 760 aaPredicted RBP12.23□□□□□ -0.45
SF3A3-201ENST00000373019 TBC1D2Q9BYX2 928 aa12.23□□□□□ -0.45
SF3A3-201ENST00000373019 ANKRD30BQ9BXX2 1392 aa12.22□□□□□ -0.45
SF3A3-201ENST00000373019 KIF15Q9NS87 1388 aa12.22□□□□□ -0.45
SF3A3-201ENST00000373019 TERF1P54274 439 aa12.22□□□□□ -0.45
SF3A3-201ENST00000373019 GAS2L3Q86XJ1 694 aa12.22□□□□□ -0.45
SF3A3-201ENST00000373019 FAM13BQ9NYF5 915 aa12.22□□□□□ -0.45
SF3A3-201ENST00000373019 TRIM44Q96DX7 344 aaPredicted RBP12.22□□□□□ -0.45
SF3A3-201ENST00000373019 MAP7D2Q96T17 732 aa12.22□□□□□ -0.45
SF3A3-201ENST00000373019 STAC3Q96MF2 364 aa12.21□□□□□ -0.45
SF3A3-201ENST00000373019 CASKIN1Q8WXD9 1431 aa12.21□□□□□ -0.45
SF3A3-201ENST00000373019 USP47Q96K76 1375 aa12.21□□□□□ -0.46
SF3A3-201ENST00000373019 RALBP1Q15311 655 aa12.19□□□□□ -0.46
SF3A3-201ENST00000373019 ISY1Q9ULR0 285 aaKnown RBP12.19□□□□□ -0.46
SF3A3-201ENST00000373019 KDM5CP41229 1560 aa12.19□□□□□ -0.46
SF3A3-201ENST00000373019 ABCC2Q92887 1545 aa12.19□□□□□ -0.46
SF3A3-201ENST00000373019 PRDM10Q9NQV6 1147 aa12.19□□□□□ -0.46
SF3A3-201ENST00000373019 UTP14CQ5TAP6 766 aaKnown RBP12.19□□□□□ -0.46
SF3A3-201ENST00000373019 MTUS2Q5JR59 1369 aa12.19□□□□□ -0.46
SF3A3-201ENST00000373019 DMTNQ08495 405 aa12.18□□□□□ -0.46
SF3A3-201ENST00000373019 ZSCAN20P17040 1043 aaPredicted RBP12.18□□□□□ -0.46
SF3A3-201ENST00000373019 NAP1L2Q9ULW6 460 aaPredicted RBP12.18□□□□□ -0.46
SF3A3-201ENST00000373019 ROCK2O75116 1388 aaKnown RBP12.18□□□□□ -0.46
SF3A3-201ENST00000373019 SAMD9Q5K651 1589 aa12.18□□□□□ -0.46
SF3A3-201ENST00000373019 KLHL34Q8N239 644 aa12.17□□□□□ -0.46
SF3A3-201ENST00000373019 CHIC2Q9UKJ5 165 aa12.17□□□□□ -0.46
SF3A3-201ENST00000373019 SPRYD3Q8NCJ5 442 aa12.17□□□□□ -0.46
SF3A3-201ENST00000373019 BLMP54132 1417 aaPredicted RBP12.17□□□□□ -0.46
SF3A3-201ENST00000373019 UHRF1BP1LA0JNW5 1464 aa12.16□□□□□ -0.46
SF3A3-201ENST00000373019 IGHDP01880 384 aa12.16□□□□□ -0.46
SF3A3-201ENST00000373019 ZSCAN30Q86W11 494 aa12.16□□□□□ -0.46
SF3A3-201ENST00000373019 TBC1D32Q96NH3 1257 aa12.16□□□□□ -0.46
SF3A3-201ENST00000373019 MBD5Q9P267 1494 aa12.16□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms