RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 TIMELESSQ9UNS1 1208 aa3.98□□□□□ -1.77
VPS54-202ENST00000354504 TOPBP1Q92547 1522 aa3.97□□□□□ -1.77
VPS54-202ENST00000354504 RAPGEF2Q9Y4G8 1499 aa3.97□□□□□ -1.77
VPS54-202ENST00000354504 CABP2Q9NPB3 220 aa3.97□□□□□ -1.77
VPS54-202ENST00000354504 LOC105371045A0A1W2PR82 267 aa3.96□□□□□ -1.78
VPS54-202ENST00000354504 SEMA3EO15041 775 aa3.96□□□□□ -1.78
VPS54-202ENST00000354504 EMP3P54852 163 aa3.96□□□□□ -1.78
VPS54-202ENST00000354504 CUX2O14529 1486 aa3.96□□□□□ -1.78
VPS54-202ENST00000354504 POLA1P09884 1462 aaPredicted RBP3.96□□□□□ -1.78
VPS54-202ENST00000354504 EEA1Q15075 1411 aa3.96□□□□□ -1.78
VPS54-202ENST00000354504 POTEB3A0JP26 581 aa3.96□□□□□ -1.78
VPS54-202ENST00000354504 ZNF316A6NFI3 1004 aaPredicted RBP3.96□□□□□ -1.78
VPS54-202ENST00000354504 TBC1D12O60347 775 aa3.96□□□□□ -1.78
VPS54-202ENST00000354504 POTEBQ6S5H4 581 aa3.96□□□□□ -1.78
VPS54-202ENST00000354504 ANO8Q9HCE9 1232 aaPredicted RBP3.96□□□□□ -1.78
VPS54-202ENST00000354504 FGD5Q6ZNL6 1462 aa3.95□□□□□ -1.78
VPS54-202ENST00000354504 CADPSQ9ULU8 1353 aa3.95□□□□□ -1.78
VPS54-202ENST00000354504 FOXK1P85037 733 aa3.94□□□□□ -1.78
VPS54-202ENST00000354504 NBR1Q14596 966 aa3.94□□□□□ -1.78
VPS54-202ENST00000354504 MFSD10Q14728 455 aa3.94□□□□□ -1.78
VPS54-202ENST00000354504 ARIH1Q9Y4X5 557 aaPredicted RBP3.94□□□□□ -1.78
VPS54-202ENST00000354504 ADAMTS12P58397 1594 aa3.94□□□□□ -1.78
VPS54-202ENST00000354504 DPY19L2Q6NUT2 758 aa3.94□□□□□ -1.78
VPS54-202ENST00000354504 FANCD2Q9BXW9 1451 aa3.94□□□□□ -1.78
VPS54-202ENST00000354504 TNIKQ9UKE5 1360 aa3.94□□□□□ -1.78
VPS54-202ENST00000354504 DHX30Q7L2E3 1194 aaKnown RBP eCLIP3.93□□□□□ -1.78
VPS54-202ENST00000354504 TMEM92Q6UXU6 159 aa3.93□□□□□ -1.78
VPS54-202ENST00000354504 EIF4G3O43432 1585 aaKnown RBP3.93□□□□□ -1.78
VPS54-202ENST00000354504 ARHGEF11O15085 1522 aa3.92□□□□□ -1.78
VPS54-202ENST00000354504 CEP162Q5TB80 1403 aa3.92□□□□□ -1.78
VPS54-202ENST00000354504 GOLGA3Q08378 1498 aa3.92□□□□□ -1.78
VPS54-202ENST00000354504 ARHGAP35Q9NRY4 1499 aa3.92□□□□□ -1.78
VPS54-202ENST00000354504 GPHNQ9NQX3 736 aaPredicted RBP3.92□□□□□ -1.78
VPS54-202ENST00000354504 PLSCR2Q9NRY7 297 aa3.92□□□□□ -1.78
VPS54-202ENST00000354504 SNAPC4Q5SXM2 1469 aa3.92□□□□□ -1.78
VPS54-202ENST00000354504 CEP164Q9UPV0 1460 aa3.92□□□□□ -1.78
VPS54-202ENST00000354504 ZNF710Q8N1W2 664 aa3.92□□□□□ -1.78
VPS54-202ENST00000354504 SHROOM2Q13796 1616 aa3.91□□□□□ -1.78
VPS54-202ENST00000354504 PCF11O94913 1555 aaKnown RBP3.91□□□□□ -1.78
VPS54-202ENST00000354504 TULP1O00294 542 aaPredicted RBP3.91□□□□□ -1.78
VPS54-202ENST00000354504 PCDHGA4Q9Y5G9 962 aa3.91□□□□□ -1.78
VPS54-202ENST00000354504 MAP3K1Q13233 1512 aa3.91□□□□□ -1.78
VPS54-202ENST00000354504 ERBB3P21860 1342 aa3.91□□□□□ -1.78
VPS54-202ENST00000354504 LMOD2Q6P5Q4 547 aa3.91□□□□□ -1.78
VPS54-202ENST00000354504 RAD54L2Q9Y4B4 1467 aa3.9□□□□□ -1.78
VPS54-202ENST00000354504 MLLT3P42568 568 aaPredicted RBP3.9□□□□□ -1.78
VPS54-202ENST00000354504 MAGI3Q5TCQ9 1506 aa3.9□□□□□ -1.79
VPS54-202ENST00000354504 IGF1RP08069 1367 aa3.9□□□□□ -1.79
VPS54-202ENST00000354504 HRO43593 1189 aa3.89□□□□□ -1.79
VPS54-202ENST00000354504 ARHGAP33O14559 1287 aa3.89□□□□□ -1.79
VPS54-202ENST00000354504 OXER1Q8TDS5 423 aa3.89□□□□□ -1.79
VPS54-202ENST00000354504 CEP170Q5SW79 1584 aa3.89□□□□□ -1.79
VPS54-202ENST00000354504 BRPF1P55201 1214 aaPredicted RBP3.89□□□□□ -1.79
VPS54-202ENST00000354504 CRISPLD2Q9H0B8 497 aa3.89□□□□□ -1.79
VPS54-202ENST00000354504 ADCY10Q96PN6 1610 aa3.89□□□□□ -1.79
VPS54-202ENST00000354504 TIAM1Q13009 1591 aa3.89□□□□□ -1.79
VPS54-202ENST00000354504 CLIP1P30622 1438 aa3.88□□□□□ -1.79
VPS54-202ENST00000354504 CHD1O14646 1710 aa3.88□□□□□ -1.79
VPS54-202ENST00000354504 LAPTM4BQ86VI4 370 aa3.88□□□□□ -1.79
VPS54-202ENST00000354504 LARP6Q9BRS8 491 aaKnown RBP3.88□□□□□ -1.79
VPS54-202ENST00000354504 SLC24A3Q9HC58 644 aa3.88□□□□□ -1.79
VPS54-202ENST00000354504 CROCC2H7BZ55 1655 aa3.88□□□□□ -1.79
VPS54-202ENST00000354504 ZC3H15Q8WU90 426 aaKnown RBP3.88□□□□□ -1.79
VPS54-202ENST00000354504 EMILIN3Q9NT22 766 aa3.88□□□□□ -1.79
VPS54-202ENST00000354504 NYAP1Q6ZVC0 841 aa3.87□□□□□ -1.79
VPS54-202ENST00000354504 HCSTQ9UBK5 93 aa3.87□□□□□ -1.79
VPS54-202ENST00000354504 LSM11P83369 360 aaKnown RBP eCLIP3.87□□□□□ -1.792e-7■□□□□ 8
VPS54-202ENST00000354504 RBM26Q5T8P6 1007 aaKnown RBP3.87□□□□□ -1.79
VPS54-202ENST00000354504 TMC2Q8TDI7 906 aa3.87□□□□□ -1.79
VPS54-202ENST00000354504 CAMK2BQ13554 666 aa3.87□□□□□ -1.79
VPS54-202ENST00000354504 RNF166Q96A37 237 aaPredicted RBP3.87□□□□□ -1.79
VPS54-202ENST00000354504 GRIN2BQ13224 1484 aa3.86□□□□□ -1.79
VPS54-202ENST00000354504 EFCAB5A4FU69 1503 aa3.86□□□□□ -1.79
VPS54-202ENST00000354504 GPBP1L1Q9HC44 474 aaPredicted RBP3.86□□□□□ -1.79
VPS54-202ENST00000354504 VPS8Q8N3P4 1428 aa3.86□□□□□ -1.79
VPS54-202ENST00000354504 AQRO60306 1485 aaKnown RBP eCLIP3.86□□□□□ -1.791e-7■■■■□ 23.5
VPS54-202ENST00000354504 UGGT2Q9NYU1 1516 aa3.86□□□□□ -1.79
VPS54-202ENST00000354504 MYT1LQ9UL68 1186 aa3.86□□□□□ -1.79
VPS54-202ENST00000354504 MRC2Q9UBG0 1479 aa3.85□□□□□ -1.79
VPS54-202ENST00000354504 KDM5BQ9UGL1 1544 aa3.85□□□□□ -1.79
VPS54-202ENST00000354504 ZNF608Q9ULD9 1512 aaPredicted RBP3.85□□□□□ -1.79
VPS54-202ENST00000354504 GCC2Q8IWJ2 1684 aa3.85□□□□□ -1.79
VPS54-202ENST00000354504 TESPA1A2RU30 521 aaPredicted RBP3.85□□□□□ -1.79
VPS54-202ENST00000354504 BHMG1C9JSJ3 638 aaPredicted RBP3.85□□□□□ -1.79
VPS54-202ENST00000354504 PDE4AP27815 886 aa3.85□□□□□ -1.79
VPS54-202ENST00000354504 E2F4Q16254 413 aa3.85□□□□□ -1.79
VPS54-202ENST00000354504 PPP4R3BQ5MIZ7 849 aa3.85□□□□□ -1.79
VPS54-202ENST00000354504 KIAA0556O60303 1618 aa3.85□□□□□ -1.79
VPS54-202ENST00000354504 DISP1Q96F81 1524 aa3.85□□□□□ -1.79
VPS54-202ENST00000354504 CDC42BPAQ5VT25 1732 aa3.85□□□□□ -1.79
VPS54-202ENST00000354504 PRIM1P49642 420 aaKnown RBP3.84□□□□□ -1.79
VPS54-202ENST00000354504 DENND4BO75064 1496 aaPredicted RBP3.84□□□□□ -1.79
VPS54-202ENST00000354504 RRBP1Q9P2E9 1410 aaKnown RBP3.84□□□□□ -1.79
VPS54-202ENST00000354504 JPH4Q96JJ6 628 aa3.84□□□□□ -1.79
VPS54-202ENST00000354504 DSG2Q14126 1118 aa3.84□□□□□ -1.8
VPS54-202ENST00000354504 BCL2L12Q9HB09 334 aa3.84□□□□□ -1.8
VPS54-202ENST00000354504 FAM205CA6NFA0 338 aa3.83□□□□□ -1.8
VPS54-202ENST00000354504 P3H3Q8IVL6 736 aa3.83□□□□□ -1.8
VPS54-202ENST00000354504 EPAS1Q99814 870 aa3.83□□□□□ -1.8
VPS54-202ENST00000354504 KDM6BO15054 1643 aa3.83□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms