RNA–Protein interactions for RNA: ENST00000341594.9

SYNE1-201, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SYNE1, Length 26,584 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-201ENST00000341594 UBE2Q2Q8WVN8 375 aa4.54□□□□□ -1.68
SYNE1-201ENST00000341594 SCRIBQ14160 1630 aa4.54□□□□□ -1.68
SYNE1-201ENST00000341594 PPFIA3O75145 1194 aa4.54□□□□□ -1.68
SYNE1-201ENST00000341594 TMC1Q8TDI8 760 aa4.54□□□□□ -1.68
SYNE1-201ENST00000341594 R3HCC1Q9Y3T6 440 aaKnown RBP4.54□□□□□ -1.68
SYNE1-201ENST00000341594 CLIP1P30622 1438 aa4.53□□□□□ -1.68
SYNE1-201ENST00000341594 FHAD1B1AJZ9 1412 aa4.53□□□□□ -1.68
SYNE1-201ENST00000341594 PABPN1Q86U42 306 aaKnown RBP eCLIP4.53□□□□□ -1.68
SYNE1-201ENST00000341594 SMARCA4P51532 1647 aa4.53□□□□□ -1.68
SYNE1-201ENST00000341594 CLUAP1Q96AJ1 413 aa4.53□□□□□ -1.68
SYNE1-201ENST00000341594 CBX1P83916 185 aa4.53□□□□□ -1.68
SYNE1-201ENST00000341594 ZNF830Q96NB3 372 aaPredicted RBP4.53□□□□□ -1.68
SYNE1-201ENST00000341594 RRP9O43818 475 aaKnown RBP4.53□□□□□ -1.68
SYNE1-201ENST00000341594 GOLGA6L3A6NEY3 463 aa4.53□□□□□ -1.68
SYNE1-201ENST00000341594 NPM1P06748 294 aaKnown RBP eCLIP4.53□□□□□ -1.68
SYNE1-201ENST00000341594 VPS8Q8N3P4 1428 aa4.52□□□□□ -1.69
SYNE1-201ENST00000341594 AEBP1Q8IUX7 1158 aa4.52□□□□□ -1.69
SYNE1-201ENST00000341594 SAFB2Q14151 953 aaKnown RBP eCLIP4.52□□□□□ -1.69
SYNE1-201ENST00000341594 L1TD1Q5T7N2 865 aaKnown RBP4.52□□□□□ -1.69
SYNE1-201ENST00000341594 DRC7Q8IY82 874 aa4.52□□□□□ -1.69
SYNE1-201ENST00000341594 SYNJ1O43426 1573 aa4.52□□□□□ -1.69
SYNE1-201ENST00000341594 HSP90AA2PQ14568 343 aaPredicted RBP4.52□□□□□ -1.69
SYNE1-201ENST00000341594 ROCK2O75116 1388 aaKnown RBP4.51□□□□□ -1.69
SYNE1-201ENST00000341594 CTTNBP2Q8WZ74 1663 aa4.51□□□□□ -1.69
SYNE1-201ENST00000341594 ANKRD12Q6UB98 2062 aa4.51□□□□□ -1.69
SYNE1-201ENST00000341594 ZNF592Q92610 1267 aa4.51□□□□□ -1.69
SYNE1-201ENST00000341594 NECTIN2Q92692 538 aa4.51□□□□□ -1.69
SYNE1-201ENST00000341594 CCNB3Q8WWL7 1395 aa4.51□□□□□ -1.69
SYNE1-201ENST00000341594 PSMD1Q99460 953 aa4.51□□□□□ -1.69
SYNE1-201ENST00000341594 MYH7P12883 1935 aa4.5□□□□□ -1.69
SYNE1-201ENST00000341594 SETD1BQ9UPS6 1966 aaKnown RBP4.5□□□□□ -1.69
SYNE1-201ENST00000341594 PUS7Q96PZ0 661 aaKnown RBP4.5□□□□□ -1.69
SYNE1-201ENST00000341594 FBLN2P98095 1184 aa4.5□□□□□ -1.69
SYNE1-201ENST00000341594 GCC2Q8IWJ2 1684 aa4.5□□□□□ -1.69
SYNE1-201ENST00000341594 PLCD4Q9BRC7 762 aa4.5□□□□□ -1.69
SYNE1-201ENST00000341594 LTV1Q96GA3 475 aaPredicted RBP4.5□□□□□ -1.69
SYNE1-201ENST00000341594 FRAT2O75474 233 aaPredicted RBP4.49□□□□□ -1.69
SYNE1-201ENST00000341594 CROCCQ5TZA2 2017 aa4.49□□□□□ -1.69
SYNE1-201ENST00000341594 IPO4Q8TEX9 1081 aaKnown RBP4.49□□□□□ -1.69
SYNE1-201ENST00000341594 CFAP43Q8NDM7 1665 aa4.49□□□□□ -1.69
SYNE1-201ENST00000341594 SETQ01105 290 aaPredicted RBP4.49□□□□□ -1.69
SYNE1-201ENST00000341594 GORABQ5T7V8 394 aa4.49□□□□□ -1.69
SYNE1-201ENST00000341594 CCAR2Q8N163 923 aaKnown RBP4.49□□□□□ -1.69
SYNE1-201ENST00000341594 ABCC8Q09428 1581 aa4.49□□□□□ -1.69
SYNE1-201ENST00000341594 CDCA7LQ96GN5 454 aa4.49□□□□□ -1.69
SYNE1-201ENST00000341594 THOC2Q8NI27 1593 aaKnown RBP4.49□□□□□ -1.69
SYNE1-201ENST00000341594 MYH1P12882 1939 aa4.49□□□□□ -1.69
SYNE1-201ENST00000341594 MYH2Q9UKX2 1941 aa4.49□□□□□ -1.69
SYNE1-201ENST00000341594 MYH4Q9Y623 1939 aa4.49□□□□□ -1.69
SYNE1-201ENST00000341594 TOP2BQ02880 1626 aa4.49□□□□□ -1.69
SYNE1-201ENST00000341594 NINQ8N4C6 2090 aa4.48□□□□□ -1.69
SYNE1-201ENST00000341594 PDE6BP35913 854 aa4.48□□□□□ -1.69
SYNE1-201ENST00000341594 CHAMP1Q96JM3 812 aa4.48□□□□□ -1.69
SYNE1-201ENST00000341594 HINFPQ9BQA5 517 aa4.48□□□□□ -1.69
SYNE1-201ENST00000341594 SCAPERQ9BY12 1400 aa4.48□□□□□ -1.69
SYNE1-201ENST00000341594 SUPT6HQ7KZ85 1726 aaKnown RBP4.48□□□□□ -1.69
SYNE1-201ENST00000341594 BCL2L13Q9BXK5 485 aa4.48□□□□□ -1.69
SYNE1-201ENST00000341594 CUX1P39880 1505 aa4.47□□□□□ -1.69
SYNE1-201ENST00000341594 BECN1Q14457 450 aa4.47□□□□□ -1.69
SYNE1-201ENST00000341594 RNF214Q8ND24 703 aa4.47□□□□□ -1.69
SYNE1-201ENST00000341594 C17orf53Q8N3J3 647 aaPredicted RBP4.47□□□□□ -1.69
SYNE1-201ENST00000341594 MFAP1P55081 439 aaKnown RBP4.47□□□□□ -1.69
SYNE1-201ENST00000341594 CEP162Q5TB80 1403 aa4.47□□□□□ -1.69
SYNE1-201ENST00000341594 KCTD17Q8N5Z5 321 aa4.47□□□□□ -1.69
SYNE1-201ENST00000341594 MYH3P11055 1940 aa4.47□□□□□ -1.69
SYNE1-201ENST00000341594 SYTL4Q96C24 671 aaPredicted RBP4.47□□□□□ -1.69
SYNE1-201ENST00000341594 CRBNQ96SW2 442 aa4.47□□□□□ -1.69
SYNE1-201ENST00000341594 CC2D2AQ9P2K1 1620 aa4.47□□□□□ -1.69
SYNE1-201ENST00000341594 EIF4G1Q04637 1599 aaKnown RBP4.47□□□□□ -1.69
SYNE1-201ENST00000341594 CLSTN1O94985 981 aa4.47□□□□□ -1.69
SYNE1-201ENST00000341594 DHX8Q14562 1220 aaKnown RBP4.47□□□□□ -1.69
SYNE1-201ENST00000341594 AQRO60306 1485 aaKnown RBP eCLIP4.47□□□□□ -1.69
SYNE1-201ENST00000341594 PLEKHH2Q8IVE3 1493 aa4.47□□□□□ -1.69
SYNE1-201ENST00000341594 SCN8AQ9UQD0 1980 aa4.47□□□□□ -1.69
SYNE1-201ENST00000341594 PDE4AP27815 886 aa4.47□□□□□ -1.69
SYNE1-201ENST00000341594 CUL7Q14999 1698 aa4.47□□□□□ -1.69
SYNE1-201ENST00000341594 SKOR2Q2VWA4 1001 aaPredicted RBP4.46□□□□□ -1.69
SYNE1-201ENST00000341594 CENPJQ9HC77 1338 aaPredicted RBP4.46□□□□□ -1.7
SYNE1-201ENST00000341594 CHD4Q14839 1912 aa4.46□□□□□ -1.7
SYNE1-201ENST00000341594 PHF14O94880 888 aa4.46□□□□□ -1.7
SYNE1-201ENST00000341594 RRBP1Q9P2E9 1410 aaKnown RBP4.46□□□□□ -1.7
SYNE1-201ENST00000341594 ZNF771Q7L3S4 317 aaPredicted RBP4.46□□□□□ -1.7
SYNE1-201ENST00000341594 NUTM2FA1L443 756 aa4.46□□□□□ -1.7
SYNE1-201ENST00000341594 FAM43AQ8N2R8 423 aa4.45□□□□□ -1.7
SYNE1-201ENST00000341594 IPO9Q96P70 1041 aaKnown RBP4.45□□□□□ -1.7
SYNE1-201ENST00000341594 RABEP2Q9H5N1 569 aa4.45□□□□□ -1.7
SYNE1-201ENST00000341594 OTOFQ9HC10 1997 aa4.45□□□□□ -1.7
SYNE1-201ENST00000341594 HS1BP3Q53T59 392 aa4.45□□□□□ -1.7
SYNE1-201ENST00000341594 EFCAB5A4FU69 1503 aa4.45□□□□□ -1.7
SYNE1-201ENST00000341594 MCM5P33992 734 aa4.45□□□□□ -1.7
SYNE1-201ENST00000341594 PNNQ9H307 717 aaKnown RBP4.45□□□□□ -1.7
SYNE1-201ENST00000341594 ERICH4A6NGS2 130 aa4.45□□□□□ -1.7
SYNE1-201ENST00000341594 WIZO95785 1651 aa4.45□□□□□ -1.7
SYNE1-201ENST00000341594 TMCO4Q5TGY1 634 aa4.45□□□□□ -1.7
SYNE1-201ENST00000341594 NEFHP12036 1026 aa4.45□□□□□ -1.7
SYNE1-201ENST00000341594 ITSN2Q9NZM3 1697 aa4.45□□□□□ -1.7
SYNE1-201ENST00000341594 BBXQ8WY36 941 aaPredicted RBP4.45□□□□□ -1.7
SYNE1-201ENST00000341594 ANKRD30AQ9BXX3 1397 aa4.45□□□□□ -1.7
SYNE1-201ENST00000341594 MAP4K4O95819 1239 aaPredicted RBP4.44□□□□□ -1.7
SYNE1-201ENST00000341594 ZBTB22O15209 634 aa4.44□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms