RNA–Protein interactions for RNA: ENST00000341472.9

SYNE2-201, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best) BASIC

Gene SYNE2, Length 1,132 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-201ENST00000341472 CHIC2Q9UKJ5 165 aa31.19■■■□□ 2.58
SYNE2-201ENST00000341472 FAM50AQ14320 339 aaKnown RBP31.18■■■□□ 2.58
SYNE2-201ENST00000341472 KIF15Q9NS87 1388 aa31.17■■■□□ 2.58
SYNE2-201ENST00000341472 PTPN23Q9H3S7 1636 aa31.17■■■□□ 2.58
SYNE2-201ENST00000341472 PTPRTO14522 1441 aa31.16■■■□□ 2.58
SYNE2-201ENST00000341472 TCOF1Q13428 1488 aaKnown RBP31.16■■■□□ 2.58
SYNE2-201ENST00000341472 NCKAP5LQ9HCH0 1330 aa31.16■■■□□ 2.58
SYNE2-201ENST00000341472 TNRQ92752 1358 aa31.16■■■□□ 2.58
SYNE2-201ENST00000341472 DAPK1P53355 1430 aa31.15■■■□□ 2.58
SYNE2-201ENST00000341472 NCOA1Q15788 1441 aa31.15■■■□□ 2.58
SYNE2-201ENST00000341472 KDM5DQ9BY66 1539 aa31.14■■■□□ 2.58
SYNE2-201ENST00000341472 FAM135AQ9P2D6 1515 aa31.14■■■□□ 2.57
SYNE2-201ENST00000341472 PKD2Q13563 968 aa31.13■■■□□ 2.57
SYNE2-201ENST00000341472 PZPP20742 1482 aa31.12■■■□□ 2.57
SYNE2-201ENST00000341472 SHANK2Q9UPX8 1470 aa31.12■■■□□ 2.57
SYNE2-201ENST00000341472 DUOX2Q9NRD8 1548 aa31.12■■■□□ 2.57
SYNE2-201ENST00000341472 ANKRD30AQ9BXX3 1397 aa31.11■■■□□ 2.57
SYNE2-201ENST00000341472 STRCQ7RTU9 1775 aa31.1■■■□□ 2.57
SYNE2-201ENST00000341472 GRWD1Q9BQ67 446 aaKnown RBP eCLIP31.09■■■□□ 2.57
SYNE2-201ENST00000341472 CAMSAP1Q5T5Y3 1602 aa31.08■■■□□ 2.57
SYNE2-201ENST00000341472 A2ML1A8K2U0 1454 aa31.06■■■□□ 2.56
SYNE2-201ENST00000341472 THEMISQ8N1K5 641 aaPredicted RBP31.04■■■□□ 2.56
SYNE2-201ENST00000341472 ERBINQ96RT1 1412 aa31.04■■■□□ 2.56
SYNE2-201ENST00000341472 PPARGC1BQ86YN6 1023 aaKnown RBP31.03■■■□□ 2.56
SYNE2-201ENST00000341472 CEP170BQ9Y4F5 1589 aaPredicted RBP31.03■■■□□ 2.56
SYNE2-201ENST00000341472 ABCC3O15438 1527 aa31.02■■■□□ 2.56
SYNE2-201ENST00000341472 PLA2R1Q13018 1463 aa31.01■■■□□ 2.56
SYNE2-201ENST00000341472 DNMT1P26358 1616 aaKnown RBP31.01■■■□□ 2.55
SYNE2-201ENST00000341472 MYO3AQ8NEV4 1616 aa31■■■□□ 2.55
SYNE2-201ENST00000341472 RNF17Q9BXT8 1623 aaKnown RBP31■■■□□ 2.55
SYNE2-201ENST00000341472 EIF2AK4Q9P2K8 1649 aaKnown RBP30.99■■■□□ 2.55
SYNE2-201ENST00000341472 KANK1Q14678 1352 aa30.98■■■□□ 2.55
SYNE2-201ENST00000341472 ANKLE2Q86XL3 938 aa30.97■■■□□ 2.55
SYNE2-201ENST00000341472 NLRP1Q9C000 1473 aa30.95■■■□□ 2.54
SYNE2-201ENST00000341472 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP30.92■■■□□ 2.54
SYNE2-201ENST00000341472 MROH1Q8NDA8 1641 aa30.91■■■□□ 2.54
SYNE2-201ENST00000341472 ZNF142P52746 1687 aaPredicted RBP30.91■■■□□ 2.54
SYNE2-201ENST00000341472 CROCC2H7BZ55 1655 aa30.9■■■□□ 2.54
SYNE2-201ENST00000341472 ADGRL2O95490 1459 aa30.89■■■□□ 2.54
SYNE2-201ENST00000341472 ZNF335Q9H4Z2 1342 aaPredicted RBP30.89■■■□□ 2.54
SYNE2-201ENST00000341472 ARHGAP31Q2M1Z3 1444 aa30.89■■■□□ 2.53
SYNE2-201ENST00000341472 ERVK-7P63135 1459 aa30.89■■■□□ 2.53
SYNE2-201ENST00000341472 ZC3H13Q5T200 1668 aaKnown RBP30.85■■■□□ 2.53
SYNE2-201ENST00000341472 ANKRD50Q9ULJ7 1429 aa30.85■■■□□ 2.53
SYNE2-201ENST00000341472 ITGAEP38570 1179 aa30.85■■■□□ 2.53
SYNE2-201ENST00000341472 SPATA31D1Q6ZQQ2 1576 aa30.84■■■□□ 2.53
SYNE2-201ENST00000341472 UGGT1Q9NYU2 1555 aa30.83■■■□□ 2.53
SYNE2-201ENST00000341472 PRDM15P57071 1507 aaPredicted RBP30.83■■■□□ 2.53
SYNE2-201ENST00000341472 LTBP4Q8N2S1 1624 aa30.81■■■□□ 2.52
SYNE2-201ENST00000341472 STAG3Q9UJ98 1225 aa30.77■■■□□ 2.52
SYNE2-201ENST00000341472 ROCK1Q13464 1354 aa30.77■■■□□ 2.52
SYNE2-201ENST00000341472 IDI1Q13907 227 aa30.75■■■□□ 2.51
SYNE2-201ENST00000341472 LMTK2Q8IWU2 1503 aa30.74■■■□□ 2.51
SYNE2-201ENST00000341472 CEP152O94986 1710 aa30.74■■■□□ 2.51
SYNE2-201ENST00000341472 DEPDC5O75140 1603 aa30.73■■■□□ 2.51
SYNE2-201ENST00000341472 TXNDC2Q86VQ3 553 aa30.73■■■□□ 2.51
SYNE2-201ENST00000341472 NPHP4O75161 1426 aaPredicted RBP30.73■■■□□ 2.51
SYNE2-201ENST00000341472 VWDEQ8N2E2 1590 aa30.71■■■□□ 2.51
SYNE2-201ENST00000341472 EID1Q9Y6B2 187 aa30.7■■■□□ 2.51
SYNE2-201ENST00000341472 SLC52A1Q9NWF4 448 aa30.69■■■□□ 2.5
SYNE2-201ENST00000341472 MED14O60244 1454 aa30.69■■■□□ 2.5
SYNE2-201ENST00000341472 IQSEC2Q5JU85 1478 aa30.69■■■□□ 2.5
SYNE2-201ENST00000341472 LTKP29376 864 aa30.68■■■□□ 2.5
SYNE2-201ENST00000341472 NEURL4Q96JN8 1562 aa30.66■■■□□ 2.5
SYNE2-201ENST00000341472 CFAP65Q6ZU64 1925 aaKnown RBP30.65■■■□□ 2.5
SYNE2-201ENST00000341472 UBAP1LF5GYI3 381 aa30.65■■■□□ 2.5
SYNE2-201ENST00000341472 NOS1P29475 1434 aa30.64■■■□□ 2.49
SYNE2-201ENST00000341472 TMEM2Q9UHN6 1383 aa30.61■■■□□ 2.49
SYNE2-201ENST00000341472 NUP155O75694 1391 aa30.6■■■□□ 2.49
SYNE2-201ENST00000341472 SCAF11Q99590 1463 aaKnown RBP30.59■■■□□ 2.49
SYNE2-201ENST00000341472 EFCAB6Q5THR3 1501 aa30.58■■■□□ 2.49
SYNE2-201ENST00000341472 ARHGAP23Q9P227 1491 aa30.57■■■□□ 2.48
SYNE2-201ENST00000341472 RRBP1Q9P2E9 1410 aaKnown RBP30.57■■■□□ 2.48
SYNE2-201ENST00000341472 RPRD2Q5VT52 1461 aaKnown RBP30.57■■■□□ 2.48
SYNE2-201ENST00000341472 SLIT1O75093 1534 aa30.55■■■□□ 2.48
SYNE2-201ENST00000341472 POLR1AO95602 1720 aaPredicted RBP30.55■■■□□ 2.48
SYNE2-201ENST00000341472 UBR1Q8IWV7 1749 aa30.53■■■□□ 2.48
SYNE2-201ENST00000341472 CPS1P31327 1500 aa30.53■■■□□ 2.48
SYNE2-201ENST00000341472 TOM1O60784 492 aa30.51■■■□□ 2.47
SYNE2-201ENST00000341472 HDGFP51858 240 aaKnown RBP30.5■■■□□ 2.47
SYNE2-201ENST00000341472 PIK3C2BO00750 1634 aa30.49■■■□□ 2.47
SYNE2-201ENST00000341472 CHGAP10645 457 aaKnown RBP30.49■■■□□ 2.47
SYNE2-201ENST00000341472 SYNMO15061 1565 aa30.49■■■□□ 2.47
SYNE2-201ENST00000341472 BCANQ96GW7 911 aa30.47■■■□□ 2.47
SYNE2-201ENST00000341472 IQGAP1P46940 1657 aa30.46■■■□□ 2.47
SYNE2-201ENST00000341472 UNC13BO14795 1591 aa30.45■■■□□ 2.47
SYNE2-201ENST00000341472 SLC26A8Q96RN1 970 aa30.44■■■□□ 2.46
SYNE2-201ENST00000341472 TET3O43151 1660 aa30.43■■■□□ 2.46
SYNE2-201ENST00000341472 PIP4K2BP78356 416 aa30.43■■■□□ 2.46
SYNE2-201ENST00000341472 SCAF1Q9H7N4 1312 aaKnown RBP30.43■■■□□ 2.46
SYNE2-201ENST00000341472 PPP1R15AO75807 674 aaPredicted RBP30.4■■■□□ 2.46
SYNE2-201ENST00000341472 ABCF1Q8NE71 845 aaKnown RBP eCLIP30.39■■■□□ 2.46
SYNE2-201ENST00000341472 ADGRB3O60242 1522 aa30.38■■■□□ 2.45
SYNE2-201ENST00000341472 KCNA6P17658 529 aa30.38■■■□□ 2.45
SYNE2-201ENST00000341472 NAIPQ13075 1403 aa30.38■■■□□ 2.45
SYNE2-201ENST00000341472 TRIM52Q96A61 297 aa30.36■■■□□ 2.45
SYNE2-201ENST00000341472 SENP3Q9H4L4 574 aaPredicted RBP30.36■■■□□ 2.45
SYNE2-201ENST00000341472 KDM5AP29375 1690 aaKnown RBP30.36■■■□□ 2.45
SYNE2-201ENST00000341472 RIMS2Q9UQ26 1411 aa30.35■■■□□ 2.45
SYNE2-201ENST00000341472 LRRC7Q96NW7 1537 aa30.35■■■□□ 2.45
Retrieved 100 of 20,778 RNA–protein pairs in 125.4 ms