RNA–Protein interactions for RNA: ENST00000338910.8

PSPC1-201, Transcript of paraspeckle component 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PSPC1, Length 2,407 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PSPC1-201ENST00000338910 ADGRL1O94910 1474 aa25.81■■□□□ 1.72
PSPC1-201ENST00000338910 SCAPERQ9BY12 1400 aa25.81■■□□□ 1.72
PSPC1-201ENST00000338910 UNC13BO14795 1591 aa25.81■■□□□ 1.72
PSPC1-201ENST00000338910 ERBINQ96RT1 1412 aa25.8■■□□□ 1.72
PSPC1-201ENST00000338910 CYB5RLQ6IPT4 315 aa25.79■■□□□ 1.72
PSPC1-201ENST00000338910 RTEL1-TNFRSF6BF6WH68 1400 aa25.79■■□□□ 1.72
PSPC1-201ENST00000338910 ZFYVE16Q7Z3T8 1539 aa25.79■■□□□ 1.72
PSPC1-201ENST00000338910 C11orf95C9JLR9 678 aaPredicted RBP25.78■■□□□ 1.72
PSPC1-201ENST00000338910 HNRNPUQ00839 825 aaKnown RBP eCLIP25.78■■□□□ 1.72
PSPC1-201ENST00000338910 CD109Q6YHK3 1445 aa25.76■■□□□ 1.71
PSPC1-201ENST00000338910 MYT1LQ9UL68 1186 aa25.75■■□□□ 1.71
PSPC1-201ENST00000338910 ERICH6BQ5W0A0 696 aa25.75■■□□□ 1.71
PSPC1-201ENST00000338910 IRX6P78412 446 aaPredicted RBP25.74■■□□□ 1.71
PSPC1-201ENST00000338910 ERICH6Q7L0X2 663 aa25.74■■□□□ 1.71
PSPC1-201ENST00000338910 KDM2AQ9Y2K7 1162 aa25.73■■□□□ 1.71
PSPC1-201ENST00000338910 IQGAP3Q86VI3 1631 aa25.72■■□□□ 1.71
PSPC1-201ENST00000338910 ATP7AQ04656 1500 aa25.72■■□□□ 1.71
PSPC1-201ENST00000338910 MAGI2Q86UL8 1455 aa25.71■■□□□ 1.71
PSPC1-201ENST00000338910 SPATA31E1Q6ZUB1 1445 aa25.7■■□□□ 1.7
PSPC1-201ENST00000338910 INO80Q9ULG1 1556 aaPredicted RBP25.7■■□□□ 1.7
PSPC1-201ENST00000338910 DCAF11Q8TEB1 546 aa25.68■■□□□ 1.7
PSPC1-201ENST00000338910 CCDC7Q96M83 1385 aa25.68■■□□□ 1.7
PSPC1-201ENST00000338910 RIMBP3CA6NJZ7 1639 aa25.66■■□□□ 1.7
PSPC1-201ENST00000338910 RIMBP3BA6NNM3 1639 aa25.66■■□□□ 1.7
PSPC1-201ENST00000338910 RIMBP3Q9UFD9 1639 aa25.66■■□□□ 1.7
PSPC1-201ENST00000338910 PLA2R1Q13018 1463 aa25.66■■□□□ 1.7
PSPC1-201ENST00000338910 CCDC144AA2RUR9 1427 aa25.65■■□□□ 1.7
PSPC1-201ENST00000338910 PPP4R2Q9NY27 417 aa25.65■■□□□ 1.7
PSPC1-201ENST00000338910 KIF7Q2M1P5 1343 aa25.63■■□□□ 1.69
PSPC1-201ENST00000338910 ZNF518AQ6AHZ1 1483 aa25.62■■□□□ 1.69
PSPC1-201ENST00000338910 RGL3Q3MIN7 710 aa25.62■■□□□ 1.69
PSPC1-201ENST00000338910 USP47Q96K76 1375 aa25.62■■□□□ 1.69
PSPC1-201ENST00000338910 KIF3BO15066 747 aa25.61■■□□□ 1.69
PSPC1-201ENST00000338910 UHRF1BP1Q6BDS2 1440 aa25.6■■□□□ 1.69
PSPC1-201ENST00000338910 PRKCSHP14314 528 aaPredicted RBP25.59■■□□□ 1.69
PSPC1-201ENST00000338910 CFAP74Q9C0B2 1584 aa25.59■■□□□ 1.69
PSPC1-201ENST00000338910 CNTLNQ9NXG0 1405 aa25.59■■□□□ 1.69
PSPC1-201ENST00000338910 DHX29Q7Z478 1369 aaKnown RBP25.59■■□□□ 1.69
PSPC1-201ENST00000338910 CARD11Q9BXL7 1154 aa25.59■■□□□ 1.69
PSPC1-201ENST00000338910 KIDINS220Q9ULH0 1771 aa25.59■■□□□ 1.69
PSPC1-201ENST00000338910 POGZQ7Z3K3 1410 aa25.57■■□□□ 1.68
PSPC1-201ENST00000338910 POLR3GLQ9BT43 218 aa25.55■■□□□ 1.68
PSPC1-201ENST00000338910 DEPDC5O75140 1603 aa25.55■■□□□ 1.68
PSPC1-201ENST00000338910 ATP10AO60312 1499 aa25.54■■□□□ 1.68
PSPC1-201ENST00000338910 RALGAPBQ86X10 1494 aa25.53■■□□□ 1.68
PSPC1-201ENST00000338910 RAPGEF3O95398 923 aa25.52■■□□□ 1.68
PSPC1-201ENST00000338910 KDM5CP41229 1560 aa25.52■■□□□ 1.68
PSPC1-201ENST00000338910 E9PCH4 1651 aa25.51■■□□□ 1.67
PSPC1-201ENST00000338910 NEO1Q92859 1461 aa25.51■■□□□ 1.67
PSPC1-201ENST00000338910 KANK1Q14678 1352 aa25.51■■□□□ 1.67
PSPC1-201ENST00000338910 EIF2AK4Q9P2K8 1649 aaKnown RBP25.49■■□□□ 1.67
PSPC1-201ENST00000338910 CCDC184Q52MB2 194 aa25.48■■□□□ 1.67
PSPC1-201ENST00000338910 MLH3Q9UHC1 1453 aa25.48■■□□□ 1.67
PSPC1-201ENST00000338910 DEKP35659 375 aaKnown RBP25.48■■□□□ 1.67
PSPC1-201ENST00000338910 A2MP01023 1474 aa25.47■■□□□ 1.67
PSPC1-201ENST00000338910 PRKRIP1Q9H875 184 aaPredicted RBP25.47■■□□□ 1.67
PSPC1-201ENST00000338910 MAP3K4Q9Y6R4 1608 aa25.47■■□□□ 1.67
PSPC1-201ENST00000338910 ST20-MTHFSA0A0A6YYL1 179 aa25.47■■□□□ 1.67
PSPC1-201ENST00000338910 VWDEQ8N2E2 1590 aa25.47■■□□□ 1.67
PSPC1-201ENST00000338910 ROCK2O75116 1388 aaKnown RBP25.46■■□□□ 1.67
PSPC1-201ENST00000338910 BCORL1Q5H9F3 1711 aa25.46■■□□□ 1.67
PSPC1-201ENST00000338910 MROH1Q8NDA8 1641 aa25.46■■□□□ 1.67
PSPC1-201ENST00000338910 B4GALNT3Q6L9W6 998 aa25.45■■□□□ 1.67
PSPC1-201ENST00000338910 PRDM15P57071 1507 aaPredicted RBP25.45■■□□□ 1.66
PSPC1-201ENST00000338910 HECW2Q9P2P5 1572 aa25.45■■□□□ 1.66
PSPC1-201ENST00000338910 FAM69CQ0P6D2 419 aa25.45■■□□□ 1.66
PSPC1-201ENST00000338910 TET3O43151 1660 aa25.44■■□□□ 1.66
PSPC1-201ENST00000338910 ZBED9Q6R2W3 1325 aa25.43■■□□□ 1.66
PSPC1-201ENST00000338910 PRAG1Q86YV5 1406 aa25.43■■□□□ 1.66
PSPC1-201ENST00000338910 NBPF1Q3BBV0 1214 aa25.43■■□□□ 1.66
PSPC1-201ENST00000338910 POLR1AO95602 1720 aaPredicted RBP25.42■■□□□ 1.66
PSPC1-201ENST00000338910 GLI2P10070 1586 aa25.42■■□□□ 1.66
PSPC1-201ENST00000338910 CNGB1Q14028 1251 aaPredicted RBP25.41■■□□□ 1.66
PSPC1-201ENST00000338910 PTPRTO14522 1441 aa25.4■■□□□ 1.66
PSPC1-201ENST00000338910 FRMPD1Q5SYB0 1578 aa25.4■■□□□ 1.66
PSPC1-201ENST00000338910 TRPM2O94759 1503 aa25.39■■□□□ 1.66
PSPC1-201ENST00000338910 SPHKAPQ2M3C7 1700 aa25.39■■□□□ 1.65
PSPC1-201ENST00000338910 ABCA6Q8N139 1617 aa25.38■■□□□ 1.65
PSPC1-201ENST00000338910 GGT6Q6P531 493 aa25.38■■□□□ 1.65
PSPC1-201ENST00000338910 NOP58Q9Y2X3 529 aaKnown RBP25.38■■□□□ 1.65
PSPC1-201ENST00000338910 ARID4BQ4LE39 1312 aaPredicted RBP25.38■■□□□ 1.65
PSPC1-201ENST00000338910 DIP2BQ9P265 1576 aa25.36■■□□□ 1.65
PSPC1-201ENST00000338910 FAM9BQ8IZU0 186 aa25.35■■□□□ 1.65
PSPC1-201ENST00000338910 TRPM1Q7Z4N2 1603 aa25.35■■□□□ 1.65
PSPC1-201ENST00000338910 RICTORQ6R327 1708 aa25.34■■□□□ 1.65
PSPC1-201ENST00000338910 CLTCL1P53675 1640 aa25.34■■□□□ 1.65
PSPC1-201ENST00000338910 MRS2Q9HD23 443 aa25.34■■□□□ 1.65
PSPC1-201ENST00000338910 RNF17Q9BXT8 1623 aaKnown RBP25.33■■□□□ 1.65
PSPC1-201ENST00000338910 EFCAB6Q5THR3 1501 aa25.32■■□□□ 1.64
PSPC1-201ENST00000338910 CEP152O94986 1710 aa25.31■■□□□ 1.64
PSPC1-201ENST00000338910 PPRC1Q5VV67 1664 aaKnown RBP25.31■■□□□ 1.64
PSPC1-201ENST00000338910 TSPOAP1O95153 1857 aa25.3■■□□□ 1.64
PSPC1-201ENST00000338910 DIP2CQ9Y2E4 1556 aa25.29■■□□□ 1.64
PSPC1-201ENST00000338910 PAK3O75914 559 aaPredicted RBP25.29■■□□□ 1.64
PSPC1-201ENST00000338910 LMTK2Q8IWU2 1503 aa25.28■■□□□ 1.64
PSPC1-201ENST00000338910 YEATS2Q9ULM3 1422 aa25.28■■□□□ 1.64
PSPC1-201ENST00000338910 UGGT1Q9NYU2 1555 aa25.27■■□□□ 1.64
PSPC1-201ENST00000338910 WASHC2CQ9Y4E1 1318 aa25.27■■□□□ 1.64
PSPC1-201ENST00000338910 GPRASP1Q5JY77 1395 aa25.26■■□□□ 1.63
PSPC1-201ENST00000338910 NBR1Q14596 966 aa25.23■■□□□ 1.63
Retrieved 100 of 20,778 RNA–protein pairs in 7.7 ms