RNA–Protein interactions for RNA: ENST00000334258.9

SYNE3-201, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene SYNE3, Length 3,275 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-201ENST00000334258 PODXL2Q9NZ53 605 aa18.18■□□□□ 0.5
SYNE3-201ENST00000334258 DAXXQ9UER7 740 aaPredicted RBP18.17■□□□□ 0.5
SYNE3-201ENST00000334258 KDM2AQ9Y2K7 1162 aa18.17■□□□□ 0.5
SYNE3-201ENST00000334258 MIA2Q96PC5 1412 aa18.16■□□□□ 0.5
SYNE3-201ENST00000334258 GCC2Q8IWJ2 1684 aa18.15■□□□□ 0.5
SYNE3-201ENST00000334258 PKD2Q13563 968 aa18.14■□□□□ 0.49
SYNE3-201ENST00000334258 CAMSAP2Q08AD1 1489 aa18.14■□□□□ 0.49
SYNE3-201ENST00000334258 PLIN1O60240 522 aa18.13■□□□□ 0.49
SYNE3-201ENST00000334258 MS4A1P11836 297 aa18.13■□□□□ 0.49
SYNE3-201ENST00000334258 SKAP1Q86WV1 359 aa18.13■□□□□ 0.49
SYNE3-201ENST00000334258 KIF15Q9NS87 1388 aa18.12■□□□□ 0.49
SYNE3-201ENST00000334258 MYBBP1AQ9BQG0 1328 aaKnown RBP18.12■□□□□ 0.49
SYNE3-201ENST00000334258 ST20-MTHFSA0A0A6YYL1 179 aa18.11■□□□□ 0.49
SYNE3-201ENST00000334258 DDRGK1Q96HY6 314 aa18.11■□□□□ 0.49
SYNE3-201ENST00000334258 ARID4BQ4LE39 1312 aaPredicted RBP18.11■□□□□ 0.49
SYNE3-201ENST00000334258 ROCK2O75116 1388 aaKnown RBP18.1■□□□□ 0.49
SYNE3-201ENST00000334258 RALBP1Q15311 655 aa18.1■□□□□ 0.49
SYNE3-201ENST00000334258 ABCA8O94911 1581 aa18.1■□□□□ 0.49
SYNE3-201ENST00000334258 SLC4A3P48751 1232 aa18.1■□□□□ 0.49
SYNE3-201ENST00000334258 CDCA7LQ96GN5 454 aa18.1■□□□□ 0.49
SYNE3-201ENST00000334258 ROCK1Q13464 1354 aa18.09■□□□□ 0.49
SYNE3-201ENST00000334258 OSCARQ8IYS5 282 aa18.09■□□□□ 0.49
SYNE3-201ENST00000334258 BRPF3Q9ULD4 1205 aa18.08■□□□□ 0.49
SYNE3-201ENST00000334258 BRD4O60885 1362 aaPredicted RBP18.08■□□□□ 0.48
SYNE3-201ENST00000334258 AFAP1Q8N556 730 aa18.07■□□□□ 0.48
SYNE3-201ENST00000334258 GSE1Q14687 1217 aa18.06■□□□□ 0.48
SYNE3-201ENST00000334258 PDE3BQ13370 1112 aa18.05■□□□□ 0.48
SYNE3-201ENST00000334258 NUP155O75694 1391 aa18.05■□□□□ 0.48
SYNE3-201ENST00000334258 CRBNQ96SW2 442 aa18.05■□□□□ 0.48
SYNE3-201ENST00000334258 NLRP13Q86W25 1043 aa18.04■□□□□ 0.48
SYNE3-201ENST00000334258 LRPPRCP42704 1394 aaKnown RBP18.04■□□□□ 0.48
SYNE3-201ENST00000334258 RGL3Q3MIN7 710 aa18.04■□□□□ 0.48
SYNE3-201ENST00000334258 DCAF11Q8TEB1 546 aa18.03■□□□□ 0.48
SYNE3-201ENST00000334258 WASHC2CQ9Y4E1 1318 aa18.03■□□□□ 0.48
SYNE3-201ENST00000334258 NFKBIBQ15653 356 aa18.03■□□□□ 0.48
SYNE3-201ENST00000334258 CYB5RLQ6IPT4 315 aa18.01■□□□□ 0.47
SYNE3-201ENST00000334258 ANKRD30AQ9BXX3 1397 aa18.01■□□□□ 0.47
SYNE3-201ENST00000334258 KIAA1107Q9UPP5 1409 aa18.01■□□□□ 0.47
SYNE3-201ENST00000334258 BCORL1Q5H9F3 1711 aa18.01■□□□□ 0.47
SYNE3-201ENST00000334258 CC2D1BQ5T0F9 858 aaKnown RBP18■□□□□ 0.47
SYNE3-201ENST00000334258 KTN1Q86UP2 1357 aaKnown RBP18■□□□□ 0.47
SYNE3-201ENST00000334258 C9orf84Q5VXU9 1444 aa17.99■□□□□ 0.47
SYNE3-201ENST00000334258 ANKRD50Q9ULJ7 1429 aa17.99■□□□□ 0.47
SYNE3-201ENST00000334258 ABCC10Q5T3U5 1492 aa17.99■□□□□ 0.47
SYNE3-201ENST00000334258 ARHGAP5Q13017 1502 aa17.99■□□□□ 0.47
SYNE3-201ENST00000334258 PZPP20742 1482 aa17.98■□□□□ 0.47
SYNE3-201ENST00000334258 FRAT1Q92837 279 aaPredicted RBP17.98■□□□□ 0.47
SYNE3-201ENST00000334258 SENP3Q9H4L4 574 aaPredicted RBP17.97■□□□□ 0.47
SYNE3-201ENST00000334258 DNMT1P26358 1616 aaKnown RBP17.96■□□□□ 0.47
SYNE3-201ENST00000334258 POLR1AO95602 1720 aaPredicted RBP17.96■□□□□ 0.47
SYNE3-201ENST00000334258 NPM1P06748 294 aaKnown RBP eCLIP17.96■□□□□ 0.46
SYNE3-201ENST00000334258 CDC42BPAQ5VT25 1732 aa17.95■□□□□ 0.46
SYNE3-201ENST00000334258 EFCAB2Q5VUJ9 269 aa17.94■□□□□ 0.46
SYNE3-201ENST00000334258 C20orf194Q5TEA3 1177 aa17.94■□□□□ 0.46
SYNE3-201ENST00000334258 TTC37Q6PGP7 1564 aa17.94■□□□□ 0.46
SYNE3-201ENST00000334258 RGS3P49796 1198 aa17.93■□□□□ 0.46
SYNE3-201ENST00000334258 MBD5Q9P267 1494 aa17.92■□□□□ 0.46
SYNE3-201ENST00000334258 ABCC2Q92887 1545 aa17.92■□□□□ 0.46
SYNE3-201ENST00000334258 SYCP2Q9BX26 1530 aa17.92■□□□□ 0.46
SYNE3-201ENST00000334258 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP17.91■□□□□ 0.46
SYNE3-201ENST00000334258 KDM5CP41229 1560 aa17.91■□□□□ 0.46
SYNE3-201ENST00000334258 CLASP1Q7Z460 1538 aa17.89■□□□□ 0.45
SYNE3-201ENST00000334258 FRAT2O75474 233 aaPredicted RBP17.89■□□□□ 0.45
SYNE3-201ENST00000334258 FAM161AQ3B820 660 aa17.89■□□□□ 0.45
SYNE3-201ENST00000334258 RALGAPBQ86X10 1494 aa17.88■□□□□ 0.45
SYNE3-201ENST00000334258 SHROOM2Q13796 1616 aa17.88■□□□□ 0.45
SYNE3-201ENST00000334258 CENPQQ7L2Z9 268 aaPredicted RBP17.87■□□□□ 0.45
SYNE3-201ENST00000334258 ITSN2Q9NZM3 1697 aa17.87■□□□□ 0.45
SYNE3-201ENST00000334258 SAMD9LQ8IVG5 1584 aa17.86■□□□□ 0.45
SYNE3-201ENST00000334258 TRAPPC8Q9Y2L5 1435 aa17.86■□□□□ 0.45
SYNE3-201ENST00000334258 VSIG10Q8N0Z9 540 aa17.86■□□□□ 0.45
SYNE3-201ENST00000334258 ARHGEF12Q9NZN5 1544 aa17.86■□□□□ 0.45
SYNE3-201ENST00000334258 PARD3Q8TEW0 1356 aa17.86■□□□□ 0.45
SYNE3-201ENST00000334258 ZMYND15Q9H091 742 aa17.85■□□□□ 0.45
SYNE3-201ENST00000334258 PANK3Q9H999 370 aa17.85■□□□□ 0.45
SYNE3-201ENST00000334258 CDC42BPBQ9Y5S2 1711 aa17.85■□□□□ 0.45
SYNE3-201ENST00000334258 UHRF1BP1Q6BDS2 1440 aa17.85■□□□□ 0.45
SYNE3-201ENST00000334258 SPAG9O60271 1321 aaKnown RBP17.84■□□□□ 0.45
SYNE3-201ENST00000334258 NBPF1Q3BBV0 1214 aa17.83■□□□□ 0.45
SYNE3-201ENST00000334258 ZCCHC11Q5TAX3 1644 aaKnown RBP17.83■□□□□ 0.45
SYNE3-201ENST00000334258 PLEKHH2Q8IVE3 1493 aa17.83■□□□□ 0.45
SYNE3-201ENST00000334258 PER1O15534 1290 aaPredicted RBP17.83■□□□□ 0.44
SYNE3-201ENST00000334258 GOLGA6L2Q8N9W4 650 aaPredicted RBP17.83■□□□□ 0.44
SYNE3-201ENST00000334258 WDR43Q15061 677 aaKnown RBP eCLIP17.83■□□□□ 0.44
SYNE3-201ENST00000334258 ADAMTS8Q9UP79 889 aa17.82■□□□□ 0.44
SYNE3-201ENST00000334258 CCDC141Q6ZP82 1450 aa17.82■□□□□ 0.44
SYNE3-201ENST00000334258 ADCY10Q96PN6 1610 aa17.82■□□□□ 0.44
SYNE3-201ENST00000334258 KIF3BO15066 747 aa17.82■□□□□ 0.44
SYNE3-201ENST00000334258 RAPGEF3O95398 923 aa17.81■□□□□ 0.44
SYNE3-201ENST00000334258 C8orf34Q49A92 452 aa17.8■□□□□ 0.44
SYNE3-201ENST00000334258 KDM2BQ8NHM5 1336 aa17.8■□□□□ 0.44
SYNE3-201ENST00000334258 ASXL2Q76L83 1435 aa17.79■□□□□ 0.44
SYNE3-201ENST00000334258 SCAPERQ9BY12 1400 aa17.79■□□□□ 0.44
SYNE3-201ENST00000334258 PLCH2O75038 1416 aa17.78■□□□□ 0.44
SYNE3-201ENST00000334258 GGT6Q6P531 493 aa17.77■□□□□ 0.44
SYNE3-201ENST00000334258 GOLGA2Q08379 1002 aa17.76■□□□□ 0.43
SYNE3-201ENST00000334258 A0A0U1RQG5 324 aaPredicted RBP17.76■□□□□ 0.43
SYNE3-201ENST00000334258 RSPH4AQ5TD94 716 aa17.75■□□□□ 0.43
SYNE3-201ENST00000334258 TMF1P82094 1093 aa17.75■□□□□ 0.43
SYNE3-201ENST00000334258 DUSP27Q5VZP5 1158 aa17.74■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms