RNA–Protein interactions for RNA: YMR223W

UBP8, Transcript of Ubiquitin-specific protease component of the SAGA acetylation complex, yeast

Gene UBP8, Length 1,416 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBP8	YMR223W	CDD1	Q06549	142 aa		3	□□□□□ -1.93
UBP8	YMR223W	DIS3	Q08162	1001 aa	Known RBP	3	□□□□□ -1.93
UBP8	YMR223W	THP1	Q08231	455 aa		3	□□□□□ -1.93
UBP8	YMR223W	THP3	Q12049	470 aa	Known RBP	3	□□□□□ -1.93
UBP8	YMR223W	BTS1	Q12051	335 aa		3	□□□□□ -1.93
UBP8	YMR223W	YDL007C-A	Q2V2Q0	85 aa		3	□□□□□ -1.93
UBP8	YMR223W	TEF1	P02994	458 aa	Known RBP	2.99	□□□□□ -1.93
UBP8	YMR223W	RNR2	P09938	399 aa	Known RBP	2.99	□□□□□ -1.93
UBP8	YMR223W	YAK1	P14680	807 aa		2.99	□□□□□ -1.93
UBP8	YMR223W	ALG1	P16661	449 aa		2.99	□□□□□ -1.93
UBP8	YMR223W	RAD14	P28519	371 aa		2.99	□□□□□ -1.93
UBP8	YMR223W	RIM1	P32445	135 aa	Known RBP	2.99	□□□□□ -1.93
UBP8	YMR223W	HIR2	P32480	875 aa		2.99	□□□□□ -1.93
UBP8	YMR223W	ECT1	P33412	323 aa		2.99	□□□□□ -1.93
UBP8	YMR223W	ASC1	P38011	319 aa	Known RBP	2.99	□□□□□ -1.93
UBP8	YMR223W	BNA4	P38169	460 aa		2.99	□□□□□ -1.93
UBP8	YMR223W	SPP381	P38282	291 aa	Predicted RBP	2.99	□□□□□ -1.93
UBP8	YMR223W	GPI16	P38875	610 aa		2.99	□□□□□ -1.93
UBP8	YMR223W	PET100	P38958	111 aa		2.99	□□□□□ -1.93
UBP8	YMR223W	ALP1	P38971	573 aa		2.99	□□□□□ -1.93
UBP8	YMR223W	HIT1	P46973	164 aa		2.99	□□□□□ -1.93
UBP8	YMR223W	ROG1	P53118	685 aa		2.99	□□□□□ -1.93
UBP8	YMR223W	VOA1	P53262	265 aa		2.99	□□□□□ -1.93
UBP8	YMR223W	YNL146W	P53906	100 aa		2.99	□□□□□ -1.93
UBP8	YMR223W	BNA7	Q04066	261 aa		2.99	□□□□□ -1.93
UBP8	YMR223W	APC4	Q04601	652 aa		2.99	□□□□□ -1.93
UBP8	YMR223W	NDL1	Q06568	189 aa		2.99	□□□□□ -1.93
UBP8	YMR223W	VAM3	Q12241	283 aa		2.99	□□□□□ -1.93
UBP8	YMR223W	WTM1	Q12363	437 aa	Known RBP	2.99	□□□□□ -1.93
UBP8	YMR223W	RRD2	Q12461	358 aa		2.99	□□□□□ -1.93
UBP8	YMR223W	MTR10	Q99189	972 aa		2.99	□□□□□ -1.93
UBP8	YMR223W	YOS9	Q99220	542 aa		2.99	□□□□□ -1.93
UBP8	YMR223W	RPL24A	P04449	155 aa	Known RBP	2.98	□□□□□ -1.93
UBP8	YMR223W	MET16	P18408	261 aa	Predicted RBP	2.98	□□□□□ -1.93
UBP8	YMR223W	COQ1	P18900	473 aa		2.98	□□□□□ -1.93
UBP8	YMR223W	HXT2	P23585	541 aa		2.98	□□□□□ -1.93
UBP8	YMR223W	PBN1	P25580	416 aa		2.98	□□□□□ -1.93
UBP8	YMR223W	RPS5	P26783	225 aa	Known RBP	2.98	□□□□□ -1.93
UBP8	YMR223W	CIN8	P27895	1000 aa		2.98	□□□□□ -1.93
UBP8	YMR223W	PSO2	P30620	661 aa		2.98	□□□□□ -1.93
UBP8	YMR223W	RRP1	P35178	278 aa	Predicted RBP	2.98	□□□□□ -1.93
UBP8	YMR223W	YKL071W	P36086	256 aa		2.98	□□□□□ -1.93
UBP8	YMR223W	TCM62	P38228	572 aa	Known RBP	2.98	□□□□□ -1.93
UBP8	YMR223W	MMS21	P38632	267 aa		2.98	□□□□□ -1.93
UBP8	YMR223W	YHR177W	P38867	453 aa		2.98	□□□□□ -1.93
UBP8	YMR223W	ATM1	P40416	690 aa		2.98	□□□□□ -1.93
UBP8	YMR223W	ERG10	P41338	398 aa	Known RBP	2.98	□□□□□ -1.93
UBP8	YMR223W	RRT5	P43607	289 aa		2.98	□□□□□ -1.93
UBP8	YMR223W	CUS2	P53830	285 aa	Predicted RBP	2.98	□□□□□ -1.93
UBP8	YMR223W	DIA1	P54005	336 aa		2.98	□□□□□ -1.93
UBP8	YMR223W	TAF12	Q03761	539 aa		2.98	□□□□□ -1.93
UBP8	YMR223W	COQ9	Q05779	260 aa		2.98	□□□□□ -1.93
UBP8	YMR223W	IPK1	Q06667	281 aa		2.98	□□□□□ -1.93
UBP8	YMR223W	SRO7	Q12038	1033 aa		2.98	□□□□□ -1.93
UBP8	YMR223W	SPO24	Q3E752	67 aa		2.98	□□□□□ -1.93
UBP8	YMR223W	RHO1	P06780	209 aa	Known RBP	2.97	□□□□□ -1.93
UBP8	YMR223W	CDC33	P07260	213 aa	Known RBP	2.97	□□□□□ -1.93
UBP8	YMR223W	RPL31B	P0C2H9	113 aa	Known RBP	2.97	□□□□□ -1.93
UBP8	YMR223W	RPL18A	P0CX49	186 aa	Known RBP	2.97	□□□□□ -1.93
UBP8	YMR223W	RPL18B	P0CX50	186 aa	Known RBP	2.97	□□□□□ -1.93
UBP8	YMR223W	MATALPHA2	P0CY08	210 aa		2.97	□□□□□ -1.93
UBP8	YMR223W	HMLALPHA2	P0CY09	210 aa		2.97	□□□□□ -1.93
UBP8	YMR223W	ZRC1	P20107	442 aa		2.97	□□□□□ -1.93
UBP8	YMR223W	UTR1	P21373	530 aa		2.97	□□□□□ -1.93
UBP8	YMR223W	ADE1	P27616	306 aa		2.97	□□□□□ -1.93
UBP8	YMR223W	PEX3	P28795	441 aa		2.97	□□□□□ -1.93
UBP8	YMR223W	ATP11	P32453	318 aa		2.97	□□□□□ -1.93
UBP8	YMR223W	GLC7	P32598	312 aa	Known RBP	2.97	□□□□□ -1.93
UBP8	YMR223W	UBC6	P33296	250 aa	Predicted RBP	2.97	□□□□□ -1.93
UBP8	YMR223W	YPT52	P36018	234 aa	Known RBP	2.97	□□□□□ -1.93
UBP8	YMR223W	AIM29	P36154	155 aa		2.97	□□□□□ -1.93
UBP8	YMR223W	CHK1	P38147	527 aa		2.97	□□□□□ -1.93
UBP8	YMR223W	LDB7	P38210	180 aa		2.97	□□□□□ -1.93
UBP8	YMR223W	FET3	P38993	636 aa		2.97	□□□□□ -1.93
UBP8	YMR223W	YMR147W	P40218	223 aa	Known RBP	2.97	□□□□□ -1.93
UBP8	YMR223W	GLG2	P47011	380 aa		2.97	□□□□□ -1.93
UBP8	YMR223W	LOH1	P47055	219 aa		2.97	□□□□□ -1.93
UBP8	YMR223W	ASN2	P49090	572 aa	Known RBP	2.97	□□□□□ -1.93
UBP8	YMR223W	AVT4	P50944	713 aa		2.97	□□□□□ -1.93
UBP8	YMR223W	ZPR1	P53303	486 aa	Known RBP	2.97	□□□□□ -1.93
UBP8	YMR223W	TSA2	Q04120	196 aa		2.97	□□□□□ -1.93
UBP8	YMR223W	HRI1	Q05905	244 aa	Known RBP	2.97	□□□□□ -1.93
UBP8	YMR223W	YPR078C	Q06813	372 aa		2.97	□□□□□ -1.93
UBP8	YMR223W	RAX1	Q08760	435 aa		2.97	□□□□□ -1.93
UBP8	YMR223W	COX2	P00410	251 aa		2.96	□□□□□ -1.94
UBP8	YMR223W	NHP6B	P11633	99 aa	Known RBP	2.96	□□□□□ -1.94
UBP8	YMR223W	CBF1	P17106	351 aa		2.96	□□□□□ -1.94
UBP8	YMR223W	SAR1	P20606	190 aa	Known RBP	2.96	□□□□□ -1.94
UBP8	YMR223W	FRE2	P36033	711 aa		2.96	□□□□□ -1.94
UBP8	YMR223W	BIG1	P38813	335 aa		2.96	□□□□□ -1.94
UBP8	YMR223W	EGD2	P38879	174 aa	Known RBP	2.96	□□□□□ -1.94
UBP8	YMR223W	RFC4	P40339	323 aa	Known RBP	2.96	□□□□□ -1.94
UBP8	YMR223W	DSN1	P40568	576 aa		2.96	□□□□□ -1.94
UBP8	YMR223W	CDC40	P40968	455 aa	Predicted RBP	2.96	□□□□□ -1.94
UBP8	YMR223W	YRB1	P41920	201 aa	Known RBP	2.96	□□□□□ -1.94
UBP8	YMR223W	LIF1	P53150	421 aa		2.96	□□□□□ -1.94
UBP8	YMR223W	YNL260C	P53846	198 aa		2.96	□□□□□ -1.94
UBP8	YMR223W	HXT11	P54862	567 aa		2.96	□□□□□ -1.94
UBP8	YMR223W	ECM11	Q04110	302 aa		2.96	□□□□□ -1.94
UBP8	YMR223W	YDR222W	Q04925	415 aa		2.96	□□□□□ -1.94

Retrieved 100 of 5,963 RNA–protein pairs in 54.1 ms