RNA–Protein interactions for RNA: YKR036C

CAF4, Transcript of WD40 repeat-containing protein associated with the CCR4-NOT complex, yeast

Gene CAF4, Length 1,932 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CAF4	YKR036C	APL3	P38065	1025 aa		4.62	□□□□□ -1.67
CAF4	YKR036C	SCO2	P38072	301 aa		4.62	□□□□□ -1.67
CAF4	YKR036C	RCK1	P38622	512 aa		4.62	□□□□□ -1.67
CAF4	YKR036C	HPA3	P39979	161 aa		4.62	□□□□□ -1.67
CAF4	YKR036C	SPO73	P40031	143 aa		4.62	□□□□□ -1.67
CAF4	YKR036C	TOK1	P40310	691 aa		4.62	□□□□□ -1.67
CAF4	YKR036C	NTA1	P40354	457 aa		4.62	□□□□□ -1.67
CAF4	YKR036C	HIS6	P40545	261 aa		4.62	□□□□□ -1.67
CAF4	YKR036C	BAP3	P41815	604 aa		4.62	□□□□□ -1.67
CAF4	YKR036C	GDS1	P41913	522 aa		4.62	□□□□□ -1.67
CAF4	YKR036C	GCV1	P48015	400 aa		4.62	□□□□□ -1.67
CAF4	YKR036C	GPI8	P49018	411 aa		4.62	□□□□□ -1.67
CAF4	YKR036C	PRM8	P53174	237 aa		4.62	□□□□□ -1.67
CAF4	YKR036C	MRPL22	P53881	309 aa		4.62	□□□□□ -1.67
CAF4	YKR036C	IDP3	P53982	420 aa	Known RBP	4.62	□□□□□ -1.67
CAF4	YKR036C	YPL108W	Q02872	168 aa	Predicted RBP	4.62	□□□□□ -1.67
CAF4	YKR036C	TDA1	Q03533	586 aa		4.62	□□□□□ -1.67
CAF4	YKR036C	TPP1	Q03796	238 aa		4.62	□□□□□ -1.67
CAF4	YKR036C	YMR034C	Q05131	434 aa	Predicted RBP	4.62	□□□□□ -1.67
CAF4	YKR036C	GAS2	Q06135	555 aa		4.62	□□□□□ -1.67
CAF4	YKR036C	TMA10	Q06177	86 aa		4.62	□□□□□ -1.67
CAF4	YKR036C	OPT2	Q06593	877 aa		4.62	□□□□□ -1.67
CAF4	YKR036C	NDE2	Q07500	545 aa		4.62	□□□□□ -1.67
CAF4	YKR036C	FMP25	Q08023	583 aa		4.62	□□□□□ -1.67
CAF4	YKR036C	YOL131W	Q08270	108 aa		4.62	□□□□□ -1.67
CAF4	YKR036C	NRT1	Q08485	598 aa		4.62	□□□□□ -1.67
CAF4	YKR036C	UAF30	Q08747	228 aa		4.62	□□□□□ -1.67
CAF4	YKR036C	MDM12	Q92328	271 aa		4.62	□□□□□ -1.67
CAF4	YKR036C	RPS14A	P06367	137 aa	Known RBP	4.61	□□□□□ -1.67
CAF4	YKR036C	CDC4	P07834	779 aa		4.61	□□□□□ -1.67
CAF4	YKR036C	MNE1	P24720	663 aa		4.61	□□□□□ -1.67
CAF4	YKR036C	BUB3	P26449	341 aa		4.61	□□□□□ -1.67
CAF4	YKR036C	BEM1	P29366	551 aa		4.61	□□□□□ -1.67
CAF4	YKR036C	GSH1	P32477	678 aa		4.61	□□□□□ -1.67
CAF4	YKR036C	MUP3	P38734	546 aa		4.61	□□□□□ -1.67
CAF4	YKR036C	OCA5	P38738	679 aa		4.61	□□□□□ -1.67
CAF4	YKR036C	RPS14B	P39516	138 aa	Known RBP	4.61	□□□□□ -1.67
CAF4	YKR036C	SLM1	P40485	686 aa		4.61	□□□□□ -1.67
CAF4	YKR036C	UTP25	P40498	721 aa	Known RBP	4.61	□□□□□ -1.67
CAF4	YKR036C	YGR201C	P42936	225 aa		4.61	□□□□□ -1.67
CAF4	YKR036C	MRX5	P47007	382 aa		4.61	□□□□□ -1.67
CAF4	YKR036C	VPS25	P47142	202 aa		4.61	□□□□□ -1.67
CAF4	YKR036C	JHD2	P47156	728 aa	Predicted RBP	4.61	□□□□□ -1.67
CAF4	YKR036C	MNN10	P50108	393 aa	Known RBP	4.61	□□□□□ -1.67
CAF4	YKR036C	IMO32	P53219	342 aa		4.61	□□□□□ -1.67
CAF4	YKR036C	GND2	P53319	492 aa		4.61	□□□□□ -1.67
CAF4	YKR036C	RRN9	P53437	365 aa		4.61	□□□□□ -1.67
CAF4	YKR036C	YNR062C	P53748	327 aa		4.61	□□□□□ -1.67
CAF4	YKR036C	ERV25	P54837	211 aa	Known RBP	4.61	□□□□□ -1.67
CAF4	YKR036C	KAP120	Q02932	1032 aa		4.61	□□□□□ -1.67
CAF4	YKR036C	RRN5	Q02983	363 aa		4.61	□□□□□ -1.67
CAF4	YKR036C	PLB2	Q03674	706 aa		4.61	□□□□□ -1.67
CAF4	YKR036C	HPT1	Q04178	221 aa	Known RBP	4.61	□□□□□ -1.67
CAF4	YKR036C	CDD1	Q06549	142 aa		4.61	□□□□□ -1.67
CAF4	YKR036C	MFG1	Q07684	458 aa		4.61	□□□□□ -1.67
CAF4	YKR036C	THI73	Q07904	523 aa		4.61	□□□□□ -1.67
CAF4	YKR036C	THP1	Q08231	455 aa		4.61	□□□□□ -1.67
CAF4	YKR036C	CBC2	Q08920	208 aa	Known RBP RIP-Chip data	4.61	□□□□□ -1.67	not detected
CAF4	YKR036C	HOS1	Q12214	470 aa		4.61	□□□□□ -1.67
CAF4	YKR036C	SFM1	Q12314	213 aa		4.61	□□□□□ -1.67
CAF4	YKR036C	YBL029C-A	Q3E756	94 aa		4.61	□□□□□ -1.67
CAF4	YKR036C	ARG80	P07249	177 aa		4.6	□□□□□ -1.67
CAF4	YKR036C	MET2	P08465	486 aa		4.6	□□□□□ -1.67
CAF4	YKR036C	RPS4A	P0CX35	261 aa	Known RBP	4.6	□□□□□ -1.67
CAF4	YKR036C	RPS4B	P0CX36	261 aa	Known RBP	4.6	□□□□□ -1.67
CAF4	YKR036C	NHP6B	P11633	99 aa	Known RBP	4.6	□□□□□ -1.67
CAF4	YKR036C	IDP1	P21954	428 aa	Known RBP	4.6	□□□□□ -1.67
CAF4	YKR036C	IFM1	P25038	676 aa		4.6	□□□□□ -1.67
CAF4	YKR036C	GAC1	P28006	793 aa		4.6	□□□□□ -1.67
CAF4	YKR036C	FUN26	P31381	517 aa		4.6	□□□□□ -1.67
CAF4	YKR036C	ECM25	P32525	599 aa		4.6	□□□□□ -1.67
CAF4	YKR036C	CDC5	P32562	705 aa		4.6	□□□□□ -1.67
CAF4	YKR036C	WBP1	P33767	430 aa	Known RBP	4.6	□□□□□ -1.67
CAF4	YKR036C	YKL162C	P36052	402 aa		4.6	□□□□□ -1.67
CAF4	YKR036C	YKL151C	P36059	337 aa		4.6	□□□□□ -1.67
CAF4	YKR036C	CAF4	P36130	643 aa		4.6	□□□□□ -1.67
CAF4	YKR036C	SOH1	P38633	127 aa		4.6	□□□□□ -1.67
CAF4	YKR036C	RGI1	P40043	161 aa	Predicted RBP	4.6	□□□□□ -1.67
CAF4	YKR036C	RPL10	P41805	221 aa	Known RBP	4.6	□□□□□ -1.67
CAF4	YKR036C	CAK1	P43568	368 aa	Predicted RBP	4.6	□□□□□ -1.67
CAF4	YKR036C	RRT5	P43607	289 aa		4.6	□□□□□ -1.67
CAF4	YKR036C	NUP85	P46673	744 aa		4.6	□□□□□ -1.67
CAF4	YKR036C	MOG1	P47123	218 aa		4.6	□□□□□ -1.67
CAF4	YKR036C	MTR3	P48240	250 aa	Predicted RBP	4.6	□□□□□ -1.67
CAF4	YKR036C	COS12	P53053	380 aa		4.6	□□□□□ -1.67
CAF4	YKR036C	ROG1	P53118	685 aa		4.6	□□□□□ -1.67
CAF4	YKR036C	RPN4	Q03465	531 aa		4.6	□□□□□ -1.67
CAF4	YKR036C	SMA2	Q04658	369 aa		4.6	□□□□□ -1.67
CAF4	YKR036C	CIA1	Q05583	330 aa		4.6	□□□□□ -1.67
CAF4	YKR036C	YHC1	Q05900	231 aa	Known RBP	4.6	□□□□□ -1.67
CAF4	YKR036C	UTP21	Q06078	939 aa	Predicted RBP	4.6	□□□□□ -1.67
CAF4	YKR036C	MRPL35	Q06678	367 aa		4.6	□□□□□ -1.67
CAF4	YKR036C	BUD20	Q08004	166 aa	Predicted RBP	4.6	□□□□□ -1.67
CAF4	YKR036C	GPB1	Q08886	897 aa		4.6	□□□□□ -1.67
CAF4	YKR036C	AKR2	Q12013	749 aa		4.6	□□□□□ -1.67
CAF4	YKR036C	PDH1	Q12428	516 aa	Known RBP	4.6	□□□□□ -1.67
CAF4	YKR036C	VMA9	Q3E7B6	73 aa		4.6	□□□□□ -1.67
CAF4	YKR036C	HBN1	Q96VH4	193 aa		4.6	□□□□□ -1.67
CAF4	YKR036C	AFI1	Q99222	893 aa		4.6	□□□□□ -1.67
CAF4	YKR036C	MEX67	Q99257	599 aa	Known RBP	4.6	□□□□□ -1.67

Retrieved 100 of 5,963 RNA–protein pairs in 21.6 ms