RNA–Protein interactions for RNA: YDR364C

CDC40, Transcript of Pre-mRNA splicing factor, yeast

Gene CDC40, Length 1,368 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CDC40	YDR364C	COY1	P34237	679 aa		3.14	□□□□□ -1.91
CDC40	YDR364C	MRPL40	P36534	297 aa		3.14	□□□□□ -1.91
CDC40	YDR364C	PIM1	P36775	1133 aa		3.14	□□□□□ -1.91
CDC40	YDR364C	MAK5	P38112	773 aa	Predicted RBP	3.14	□□□□□ -1.91
CDC40	YDR364C	HEK2	P38199	381 aa	Known RBP RIP-Chip data	3.14	□□□□□ -1.91	not detected
CDC40	YDR364C	MBB1	P39534	108 aa		3.14	□□□□□ -1.91
CDC40	YDR364C	TDA10	P42938	290 aa		3.14	□□□□□ -1.91
CDC40	YDR364C	TAF6	P53040	516 aa		3.14	□□□□□ -1.91
CDC40	YDR364C	YNL143C	P53908	130 aa		3.14	□□□□□ -1.91
CDC40	YDR364C	OCA2	P53949	197 aa		3.14	□□□□□ -1.91
CDC40	YDR364C	ERV25	P54837	211 aa	Known RBP	3.14	□□□□□ -1.91
CDC40	YDR364C	CDC14	Q00684	551 aa		3.14	□□□□□ -1.91
CDC40	YDR364C	PET117	Q02771	107 aa		3.14	□□□□□ -1.91
CDC40	YDR364C	RSC9	Q03124	581 aa		3.14	□□□□□ -1.91
CDC40	YDR364C	YMR209C	Q03648	457 aa		3.14	□□□□□ -1.91
CDC40	YDR364C	MGR3	Q04472	501 aa		3.14	□□□□□ -1.91
CDC40	YDR364C	MRPL1	Q04599	285 aa		3.14	□□□□□ -1.91
CDC40	YDR364C	RTN1	Q04947	295 aa	Known RBP	3.14	□□□□□ -1.91
CDC40	YDR364C	PHO92	Q06390	306 aa		3.14	□□□□□ -1.91
CDC40	YDR364C	BSP1	Q06604	576 aa		3.14	□□□□□ -1.91
CDC40	YDR364C	CYK3	Q07533	885 aa		3.14	□□□□□ -1.91
CDC40	YDR364C	LDB18	Q07887	179 aa		3.14	□□□□□ -1.91
CDC40	YDR364C	SLD7	Q08457	257 aa		3.14	□□□□□ -1.91
CDC40	YDR364C	RRP36	Q12481	300 aa	Predicted RBP	3.14	□□□□□ -1.91
CDC40	YDR364C	RGS2	Q99188	309 aa		3.14	□□□□□ -1.91
CDC40	YDR364C	TOR2	P32600	2474 aa	Known RBP	3.14	□□□□□ -1.91
CDC40	YDR364C	GAL7	P08431	366 aa		3.13	□□□□□ -1.91
CDC40	YDR364C	YMR085W	P0CF18	432 aa		3.13	□□□□□ -1.91
CDC40	YDR364C	SCH9	P11792	824 aa	Known RBP	3.13	□□□□□ -1.91
CDC40	YDR364C	SEC14	P24280	304 aa	Known RBP	3.13	□□□□□ -1.91
CDC40	YDR364C	BUD5	P25300	642 aa	Predicted RBP	3.13	□□□□□ -1.91
CDC40	YDR364C	DCC1	P25559	380 aa		3.13	□□□□□ -1.91
CDC40	YDR364C	RPC19	P28000	142 aa	Known RBP	3.13	□□□□□ -1.91
CDC40	YDR364C	BEM1	P29366	551 aa		3.13	□□□□□ -1.91
CDC40	YDR364C	CRM1	P30822	1084 aa	Known RBP	3.13	□□□□□ -1.91
CDC40	YDR364C	PHA2	P32452	334 aa		3.13	□□□□□ -1.91
CDC40	YDR364C	MRP21	P38175	177 aa		3.13	□□□□□ -1.91
CDC40	YDR364C	HSM3	P38348	480 aa		3.13	□□□□□ -1.91
CDC40	YDR364C	PHO89	P38361	574 aa		3.13	□□□□□ -1.91
CDC40	YDR364C	YHI9	P38765	294 aa		3.13	□□□□□ -1.91
CDC40	YDR364C	YDR089W	P38966	869 aa		3.13	□□□□□ -1.91
CDC40	YDR364C	PEP8	P40335	379 aa		3.13	□□□□□ -1.91
CDC40	YDR364C	ALK1	P43633	760 aa	Known RBP	3.13	□□□□□ -1.91
CDC40	YDR364C	ATG27	P46989	271 aa		3.13	□□□□□ -1.91
CDC40	YDR364C	AIM22	P47051	409 aa		3.13	□□□□□ -1.91
CDC40	YDR364C	TMA22	P47089	198 aa	Predicted RBP	3.13	□□□□□ -1.91
CDC40	YDR364C	YIP5	P53108	310 aa		3.13	□□□□□ -1.91
CDC40	YDR364C	RMD9	P53140	646 aa	Known RBP	3.13	□□□□□ -1.91
CDC40	YDR364C	PRM1	P53835	661 aa		3.13	□□□□□ -1.91
CDC40	YDR364C	PRO2	P54885	456 aa	Known RBP	3.13	□□□□□ -1.91
CDC40	YDR364C	NUP100	Q02629	959 aa		3.13	□□□□□ -1.91
CDC40	YDR364C	MSC1	Q03104	513 aa		3.13	□□□□□ -1.91
CDC40	YDR364C	ABZ2	Q03266	374 aa		3.13	□□□□□ -1.91
CDC40	YDR364C	HPT1	Q04178	221 aa	Known RBP	3.13	□□□□□ -1.91
CDC40	YDR364C	YFH1	Q07540	174 aa		3.13	□□□□□ -1.91
CDC40	YDR364C	CMS1	Q07897	291 aa	Known RBP	3.13	□□□□□ -1.91
CDC40	YDR364C	YLR012C	Q07927	99 aa		3.13	□□□□□ -1.91
CDC40	YDR364C	THP1	Q08231	455 aa		3.13	□□□□□ -1.91
CDC40	YDR364C	YOR387C	Q08910	206 aa		3.13	□□□□□ -1.91
CDC40	YDR364C	YPL225W	Q08971	146 aa	Known RBP	3.13	□□□□□ -1.91
CDC40	YDR364C	CAR1	P00812	333 aa	Known RBP	3.12	□□□□□ -1.91
CDC40	YDR364C	RPL7A	P05737	244 aa	Known RBP	3.12	□□□□□ -1.91
CDC40	YDR364C	GPH1	P06738	902 aa	Known RBP	3.12	□□□□□ -1.91
CDC40	YDR364C	RHO2	P06781	192 aa		3.12	□□□□□ -1.91
CDC40	YDR364C	STE3	P06783	470 aa		3.12	□□□□□ -1.91
CDC40	YDR364C	CHO1	P08456	276 aa		3.12	□□□□□ -1.91
CDC40	YDR364C	RNA1	P11745	407 aa	Known RBP	3.12	□□□□□ -1.91
CDC40	YDR364C	PMR1	P13586	950 aa		3.12	□□□□□ -1.91
CDC40	YDR364C	ARO3	P14843	370 aa	Known RBP	3.12	□□□□□ -1.91
CDC40	YDR364C	NSP1	P14907	823 aa	Known RBP	3.12	□□□□□ -1.91
CDC40	YDR364C	HSP26	P15992	214 aa	Known RBP RIP-Chip data	3.12	□□□□□ -1.91	not detected
CDC40	YDR364C	DAL81	P21657	970 aa		3.12	□□□□□ -1.91
CDC40	YDR364C	UBA1	P22515	1024 aa	Known RBP	3.12	□□□□□ -1.91
CDC40	YDR364C	AAT2	P23542	418 aa	Known RBP	3.12	□□□□□ -1.91
CDC40	YDR364C	RBK1	P25332	333 aa		3.12	□□□□□ -1.91
CDC40	YDR364C	SAC1	P32368	623 aa	Known RBP	3.12	□□□□□ -1.91
CDC40	YDR364C	AEP1	P32493	518 aa		3.12	□□□□□ -1.91
CDC40	YDR364C	IMP3	P32899	183 aa	Predicted RBP	3.12	□□□□□ -1.91
CDC40	YDR364C	VPS17	P32913	551 aa		3.12	□□□□□ -1.91
CDC40	YDR364C	APD1	P38281	316 aa		3.12	□□□□□ -1.91
CDC40	YDR364C	YHR182W	P38870	785 aa		3.12	□□□□□ -1.91
CDC40	YDR364C	MLH1	P38920	769 aa		3.12	□□□□□ -1.91
CDC40	YDR364C	VHS2	P40463	436 aa		3.12	□□□□□ -1.91
CDC40	YDR364C	MOB1	P40484	314 aa		3.12	□□□□□ -1.91
CDC40	YDR364C	YJL043W	P47053	257 aa		3.12	□□□□□ -1.91
CDC40	YDR364C	ECM27	P47144	725 aa		3.12	□□□□□ -1.91
CDC40	YDR364C	BUD32	P53323	261 aa		3.12	□□□□□ -1.91
CDC40	YDR364C	YTP1	P53584	459 aa		3.12	□□□□□ -1.91
CDC40	YDR364C	RNY1	Q02933	434 aa	Known RBP	3.12	□□□□□ -1.91
CDC40	YDR364C	YLR177W	Q06251	628 aa		3.12	□□□□□ -1.91
CDC40	YDR364C	RPL7B	Q12213	244 aa	Known RBP	3.12	□□□□□ -1.91
CDC40	YDR364C	YMR030W-A	Q3E760	96 aa		3.12	□□□□□ -1.91
CDC40	YDR364C	MOT1	P32333	1867 aa		3.12	□□□□□ -1.91
CDC40	YDR364C	YER145C-A	A0A023PYF4	145 aa		3.12	□□□□□ -1.91
CDC40	YDR364C	YPR089W	O13585	888 aa		3.12	□□□□□ -1.91
CDC40	YDR364C	RAD3	P06839	778 aa		3.12	□□□□□ -1.91
CDC40	YDR364C	AQY1	P0CD91	305 aa		3.12	□□□□□ -1.91
CDC40	YDR364C	NMT1	P14743	455 aa		3.12	□□□□□ -1.91
CDC40	YDR364C	ARF2	P19146	181 aa	Known RBP	3.12	□□□□□ -1.91
CDC40	YDR364C	PRP2	P20095	876 aa	Predicted RBP	3.12	□□□□□ -1.91

Retrieved 100 of 5,963 RNA–protein pairs in 19.7 ms