RNA–Protein interactions for RNA: YBL103C

RTG3, Transcript of bHLH/Zip transcription factor for retrograde (RTG) and TOR pathways, yeast

Gene RTG3, Length 1,461 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RTG3	YBL103C	YDL007C-A	Q2V2Q0	85 aa		3.82	□□□□□ -1.8
RTG3	YBL103C	DFR1	P07807	211 aa	Known RBP RIP-Chip data	3.81	□□□□□ -1.8	not detected
RTG3	YBL103C	ISY1	P21374	235 aa	Predicted RBP	3.81	□□□□□ -1.8
RTG3	YBL103C	CRM1	P30822	1084 aa	Known RBP	3.81	□□□□□ -1.8
RTG3	YBL103C	MRE11	P32829	692 aa		3.81	□□□□□ -1.8
RTG3	YBL103C	URB2	P47108	1174 aa		3.81	□□□□□ -1.8
RTG3	YBL103C	TOF1	P53840	1238 aa		3.81	□□□□□ -1.8
RTG3	YBL103C	MHR1	Q06630	226 aa		3.81	□□□□□ -1.8
RTG3	YBL103C	ADH2	P00331	348 aa	Known RBP	3.8	□□□□□ -1.8
RTG3	YBL103C	SAM1	P10659	382 aa	Known RBP	3.8	□□□□□ -1.8
RTG3	YBL103C	SAM2	P19358	384 aa	Known RBP	3.8	□□□□□ -1.8
RTG3	YBL103C	ARO2	P28777	376 aa	Known RBP	3.8	□□□□□ -1.8
RTG3	YBL103C	HXT1	P32465	570 aa		3.8	□□□□□ -1.8
RTG3	YBL103C	ODC1	Q03028	310 aa		3.8	□□□□□ -1.8
RTG3	YBL103C	PDS5	Q04264	1277 aa		3.8	□□□□□ -1.8
RTG3	YBL103C	YPL199C	Q08954	240 aa		3.8	□□□□□ -1.8
RTG3	YBL103C	YLR108C	Q12259	485 aa		3.8	□□□□□ -1.8
RTG3	YBL103C	FOB1	O13329	566 aa		3.79	□□□□□ -1.8
RTG3	YBL103C	YAR066W	P0CX18	203 aa		3.79	□□□□□ -1.8
RTG3	YBL103C	YHR214W	P0CX19	203 aa		3.79	□□□□□ -1.8
RTG3	YBL103C	REE1	P40893	198 aa		3.79	□□□□□ -1.8
RTG3	YBL103C	OST1	P41543	476 aa	Known RBP	3.79	□□□□□ -1.8
RTG3	YBL103C	WWM1	P43582	211 aa	Known RBP	3.79	□□□□□ -1.8
RTG3	YBL103C	TRS85	P46944	698 aa		3.79	□□□□□ -1.8
RTG3	YBL103C	IBD2	P53892	351 aa		3.79	□□□□□ -1.8
RTG3	YBL103C	YDR239C	Q03780	787 aa		3.79	□□□□□ -1.8
RTG3	YBL103C	CBP4	P37267	147 aa		3.79	□□□□□ -1.8
RTG3	YBL103C	YEL057C	P39983	233 aa		3.79	□□□□□ -1.8
RTG3	YBL103C	YGL108C	P53139	140 aa		3.79	□□□□□ -1.8
RTG3	YBL103C	SUP35	P05453	685 aa	Known RBP	3.78	□□□□□ -1.8
RTG3	YBL103C	SDH3	P33421	198 aa		3.78	□□□□□ -1.8
RTG3	YBL103C	PIM1	P36775	1133 aa		3.78	□□□□□ -1.8
RTG3	YBL103C	MIX23	P38162	196 aa		3.78	□□□□□ -1.8
RTG3	YBL103C	CST26	P38226	397 aa		3.78	□□□□□ -1.8
RTG3	YBL103C	TMA108	P40462	946 aa		3.78	□□□□□ -1.8
RTG3	YBL103C	ARE2	P53629	642 aa	Known RBP	3.78	□□□□□ -1.8
RTG3	YBL103C	PNG1	Q02890	363 aa		3.78	□□□□□ -1.8
RTG3	YBL103C	RBD2	Q12270	262 aa		3.78	□□□□□ -1.8
RTG3	YBL103C	RRD2	Q12461	358 aa		3.78	□□□□□ -1.8
RTG3	YBL103C	GCN4	P03069	281 aa		3.77	□□□□□ -1.81
RTG3	YBL103C	MET28	P40573	187 aa		3.77	□□□□□ -1.81
RTG3	YBL103C	YLR152C	P54072	576 aa		3.77	□□□□□ -1.81
RTG3	YBL103C	SVL3	Q03088	825 aa	Known RBP	3.77	□□□□□ -1.81
RTG3	YBL103C	SOV1	Q04748	898 aa		3.77	□□□□□ -1.81
RTG3	YBL103C	SEC39	Q12745	709 aa		3.77	□□□□□ -1.81
RTG3	YBL103C	CDC60	P26637	1090 aa	Known RBP	3.76	□□□□□ -1.81
RTG3	YBL103C	SPR1	P32603	445 aa		3.76	□□□□□ -1.81
RTG3	YBL103C	YCR041W	P37265	110 aa		3.76	□□□□□ -1.81
RTG3	YBL103C	THI2	P38141	450 aa		3.76	□□□□□ -1.81
RTG3	YBL103C	RMD8	P43620	662 aa		3.76	□□□□□ -1.81
RTG3	YBL103C	YBR225W	P38321	900 aa		3.75	□□□□□ -1.81
RTG3	YBL103C	NCA3	P46955	337 aa		3.75	□□□□□ -1.81
RTG3	YBL103C	YGL039W	P53183	348 aa	Known RBP	3.75	□□□□□ -1.81
RTG3	YBL103C	KTR5	P53966	522 aa	Predicted RBP	3.75	□□□□□ -1.81
RTG3	YBL103C	MET8	P15807	274 aa		3.74	□□□□□ -1.81
RTG3	YBL103C	ATP10	P18496	279 aa		3.74	□□□□□ -1.81
RTG3	YBL103C	GFD2	P25370	566 aa	Known RBP	3.74	□□□□□ -1.81
RTG3	YBL103C	STB6	P36085	766 aa		3.74	□□□□□ -1.81
RTG3	YBL103C	PRM5	P40476	318 aa		3.74	□□□□□ -1.81
RTG3	YBL103C	PCP1	P53259	346 aa		3.74	□□□□□ -1.81
RTG3	YBL103C	MRP51	Q02950	344 aa		3.74	□□□□□ -1.81
RTG3	YBL103C	TAP42	Q04372	366 aa		3.74	□□□□□ -1.81
RTG3	YBL103C	SOD1	P00445	154 aa	Known RBP	3.73	□□□□□ -1.81
RTG3	YBL103C	PET123	P17558	318 aa		3.73	□□□□□ -1.81
RTG3	YBL103C	RVS161	P25343	265 aa	Known RBP	3.73	□□□□□ -1.81
RTG3	YBL103C	RIB5	P38145	238 aa		3.73	□□□□□ -1.81
RTG3	YBL103C	TWF1	P53250	332 aa		3.73	□□□□□ -1.81
RTG3	YBL103C	HRI1	Q05905	244 aa	Known RBP	3.73	□□□□□ -1.81
RTG3	YBL103C	MUM3	Q08750	479 aa		3.73	□□□□□ -1.81
RTG3	YBL103C	YML133C	Q03099	1374 aa		3.73	□□□□□ -1.81
RTG3	YBL103C	YLL067C	Q07888	1374 aa		3.73	□□□□□ -1.81
RTG3	YBL103C	YLL066C	Q99208	1374 aa		3.73	□□□□□ -1.81
RTG3	YBL103C	AFG1	P32317	509 aa		3.73	□□□□□ -1.81
RTG3	YBL103C	YIP1	P53039	248 aa		3.73	□□□□□ -1.81
RTG3	YBL103C	RPT6	Q01939	405 aa	Known RBP	3.73	□□□□□ -1.81
RTG3	YBL103C	MRD1	Q06106	887 aa	Known RBP	3.73	□□□□□ -1.81
RTG3	YBL103C	OCA4	P25366	362 aa		3.72	□□□□□ -1.81
RTG3	YBL103C	SPS22	P25380	463 aa		3.72	□□□□□ -1.81
RTG3	YBL103C	SPB1	P25582	841 aa	Predicted RBP	3.72	□□□□□ -1.81
RTG3	YBL103C	IDH2	P28241	369 aa	Known RBP	3.72	□□□□□ -1.81
RTG3	YBL103C	PMT1	P33775	817 aa		3.72	□□□□□ -1.81
RTG3	YBL103C	MST28	P39552	234 aa		3.72	□□□□□ -1.81
RTG3	YBL103C	PAN6	P40459	309 aa		3.72	□□□□□ -1.81
RTG3	YBL103C	SPO22	P40511	975 aa		3.72	□□□□□ -1.81
RTG3	YBL103C	NCS2	P53923	493 aa	Predicted RBP	3.72	□□□□□ -1.81
RTG3	YBL103C	HXT11	P54862	567 aa		3.72	□□□□□ -1.81
RTG3	YBL103C	LAM5	P43560	674 aa		3.71	□□□□□ -1.82
RTG3	YBL103C	YGR149W	P48236	432 aa		3.71	□□□□□ -1.82
RTG3	YBL103C	RAD61	Q99359	647 aa		3.71	□□□□□ -1.82
RTG3	YBL103C	RHO2	P06781	192 aa		3.7	□□□□□ -1.82
RTG3	YBL103C	DAL2	P25335	343 aa		3.7	□□□□□ -1.82
RTG3	YBL103C	RAD14	P28519	371 aa		3.7	□□□□□ -1.82
RTG3	YBL103C	CMC1	P36064	111 aa		3.7	□□□□□ -1.82
RTG3	YBL103C	ATG29	Q12092	213 aa		3.7	□□□□□ -1.82
RTG3	YBL103C	YPR022C	Q12139	1133 aa		3.7	□□□□□ -1.82
RTG3	YBL103C	RPS8A	P0CX39	200 aa	Known RBP	3.69	□□□□□ -1.82
RTG3	YBL103C	RPS8B	P0CX40	200 aa	Known RBP	3.69	□□□□□ -1.82
RTG3	YBL103C	TIP1	P27654	210 aa	Predicted RBP	3.69	□□□□□ -1.82
RTG3	YBL103C	ITR1	P30605	584 aa		3.69	□□□□□ -1.82
RTG3	YBL103C	TIM10	P87108	93 aa		3.69	□□□□□ -1.82

Retrieved 100 of 5,963 RNA–protein pairs in 51.4 ms