RNA–Protein interactions for RNA: YDR312W

SSF2, Transcript of Protein required for ribosomal large subunit maturation, yeast

Gene SSF2, Length 1,362 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SSF2	YDR312W	THI20	Q08224	551 aa		2.71	□□□□□ -1.98
SSF2	YDR312W	CTI6	Q08923	506 aa		2.71	□□□□□ -1.98
SSF2	YDR312W	HSC82	P15108	705 aa	Known RBP	2.7	□□□□□ -1.98
SSF2	YDR312W	PDA1	P16387	420 aa	Known RBP	2.7	□□□□□ -1.98
SSF2	YDR312W	ECM15	P35195	104 aa		2.7	□□□□□ -1.98
SSF2	YDR312W	NOP4	P37838	685 aa	Known RBP	2.7	□□□□□ -1.98
SSF2	YDR312W	CIN4	P39110	191 aa		2.7	□□□□□ -1.98
SSF2	YDR312W	IMD4	P50094	524 aa	Known RBP	2.7	□□□□□ -1.98
SSF2	YDR312W	YGR126W	P53274	230 aa		2.7	□□□□□ -1.98
SSF2	YDR312W	SAM50	P53969	484 aa		2.7	□□□□□ -1.98
SSF2	YDR312W	SHR3	Q02774	210 aa		2.7	□□□□□ -1.98
SSF2	YDR312W	COQ9	Q05779	260 aa		2.7	□□□□□ -1.98
SSF2	YDR312W	ADE6	P38972	1358 aa	Known RBP	2.69	□□□□□ -1.98
SSF2	YDR312W	TOM1	Q03280	3268 aa		2.69	□□□□□ -1.98
SSF2	YDR312W	PEP4	P07267	405 aa	Known RBP	2.69	□□□□□ -1.98
SSF2	YDR312W	PEP5	P12868	1029 aa		2.69	□□□□□ -1.98
SSF2	YDR312W	CBS1	P14066	229 aa		2.69	□□□□□ -1.98
SSF2	YDR312W	MET8	P15807	274 aa		2.69	□□□□□ -1.98
SSF2	YDR312W	ELO2	P25358	347 aa		2.69	□□□□□ -1.98
SSF2	YDR312W	PEP3	P27801	918 aa		2.69	□□□□□ -1.98
SSF2	YDR312W	ICL1	P28240	557 aa	Predicted RBP	2.69	□□□□□ -1.98
SSF2	YDR312W	IMP2'	P32351	346 aa		2.69	□□□□□ -1.98
SSF2	YDR312W	VPS17	P32913	551 aa		2.69	□□□□□ -1.98
SSF2	YDR312W	SEF1	P34228	1148 aa		2.69	□□□□□ -1.98
SSF2	YDR312W	YKL023W	P36103	277 aa	Known RBP	2.69	□□□□□ -1.98
SSF2	YDR312W	ALG5	P40350	334 aa		2.69	□□□□□ -1.98
SSF2	YDR312W	DIM1	P41819	318 aa	Known RBP	2.69	□□□□□ -1.98
SSF2	YDR312W	IKS1	P47042	667 aa		2.69	□□□□□ -1.98
SSF2	YDR312W	ARE2	P53629	642 aa	Known RBP	2.69	□□□□□ -1.98
SSF2	YDR312W	VPS75	P53853	264 aa		2.69	□□□□□ -1.98
SSF2	YDR312W	IMP4	P53941	290 aa	Known RBP	2.69	□□□□□ -1.98
SSF2	YDR312W	YEH2	Q07950	538 aa		2.69	□□□□□ -1.98
SSF2	YDR312W	RCN2	Q12044	265 aa		2.69	□□□□□ -1.98
SSF2	YDR312W	YBR298C-A	Q8TGK4	73 aa		2.69	□□□□□ -1.98
SSF2	YDR312W	RAD52	P06778	471 aa	Known RBP	2.68	□□□□□ -1.98
SSF2	YDR312W	SEC62	P21825	274 aa		2.68	□□□□□ -1.98
SSF2	YDR312W	ATS1	P31386	333 aa		2.68	□□□□□ -1.98
SSF2	YDR312W	PRO3	P32263	286 aa	Known RBP	2.68	□□□□□ -1.98
SSF2	YDR312W	TCD2	P36101	447 aa	Known RBP	2.68	□□□□□ -1.98
SSF2	YDR312W	SRO77	P38163	1010 aa		2.68	□□□□□ -1.98
SSF2	YDR312W	YBR225W	P38321	900 aa		2.68	□□□□□ -1.98
SSF2	YDR312W	RRP3	P38712	501 aa	Known RBP	2.68	□□□□□ -1.98
SSF2	YDR312W	YHR210C	P38893	341 aa		2.68	□□□□□ -1.98
SSF2	YDR312W	VID30	P53076	958 aa		2.68	□□□□□ -1.98
SSF2	YDR312W	GLO2	Q05584	274 aa		2.68	□□□□□ -1.98
SSF2	YDR312W	CDC45	Q08032	650 aa		2.68	□□□□□ -1.98
SSF2	YDR312W	SDH5	Q08230	162 aa		2.68	□□□□□ -1.98
SSF2	YDR312W	YOR365C	Q08844	703 aa		2.68	□□□□□ -1.98
SSF2	YDR312W	RLM1	Q12224	676 aa		2.68	□□□□□ -1.98
SSF2	YDR312W	RRI2	Q12348	645 aa		2.68	□□□□□ -1.98
SSF2	YDR312W	RTP1	Q12751	981 aa		2.68	□□□□□ -1.98
SSF2	YDR312W	YJR112W-A	Q3E743	109 aa		2.68	□□□□□ -1.98
SSF2	YDR312W	HSH49	Q99181	213 aa	Predicted RBP	2.68	□□□□□ -1.98
SSF2	YDR312W	RPS24A	P0CX31	135 aa	Known RBP	2.67	□□□□□ -1.98
SSF2	YDR312W	RPS24B	P0CX32	135 aa	Known RBP	2.67	□□□□□ -1.98
SSF2	YDR312W	APE1	P14904	514 aa		2.67	□□□□□ -1.98
SSF2	YDR312W	SUI2	P20459	304 aa	Known RBP	2.67	□□□□□ -1.98
SSF2	YDR312W	YOX1	P34161	385 aa		2.67	□□□□□ -1.98
SSF2	YDR312W	SIP2	P34164	415 aa	Known RBP	2.67	□□□□□ -1.98
SSF2	YDR312W	REG2	P38232	338 aa		2.67	□□□□□ -1.98
SSF2	YDR312W	OSH3	P38713	996 aa	Known RBP	2.67	□□□□□ -1.98
SSF2	YDR312W	SHC1	P39000	512 aa		2.67	□□□□□ -1.98
SSF2	YDR312W	VPS52	P39904	641 aa		2.67	□□□□□ -1.98
SSF2	YDR312W	YTA12	P40341	825 aa		2.67	□□□□□ -1.98
SSF2	YDR312W	CSM2	P40465	213 aa		2.67	□□□□□ -1.98
SSF2	YDR312W	ROK1	P45818	564 aa	Predicted RBP	2.67	□□□□□ -1.98
SSF2	YDR312W	AIM22	P47051	409 aa		2.67	□□□□□ -1.98
SSF2	YDR312W	YJR154W	P47181	346 aa		2.67	□□□□□ -1.98
SSF2	YDR312W	RPM2	Q02773	1202 aa		2.67	□□□□□ -1.98
SSF2	YDR312W	VPS38	Q05919	439 aa		2.67	□□□□□ -1.98
SSF2	YDR312W	RAV1	P47104	1357 aa		2.67	□□□□□ -1.98
SSF2	YDR312W	GCN4	P03069	281 aa		2.66	□□□□□ -1.98
SSF2	YDR312W	GAL80	P04387	435 aa		2.66	□□□□□ -1.98
SSF2	YDR312W	NOP1	P15646	327 aa	Known RBP	2.66	□□□□□ -1.98
SSF2	YDR312W	SMY1	P32364	656 aa	Known RBP	2.66	□□□□□ -1.98
SSF2	YDR312W	WBP1	P33767	430 aa	Known RBP	2.66	□□□□□ -1.98
SSF2	YDR312W	YBR139W	P38109	508 aa		2.66	□□□□□ -1.98
SSF2	YDR312W	PFF1	P38244	976 aa		2.66	□□□□□ -1.98
SSF2	YDR312W	SDS24	P38314	527 aa		2.66	□□□□□ -1.98
SSF2	YDR312W	MSR1	P38714	643 aa		2.66	□□□□□ -1.98
SSF2	YDR312W	KRE9	P39005	276 aa		2.66	□□□□□ -1.98
SSF2	YDR312W	YEL057C	P39983	233 aa		2.66	□□□□□ -1.98
SSF2	YDR312W	SCD6	P45978	349 aa	Known RBP RIP-Chip data	2.66	□□□□□ -1.98	not detected
SSF2	YDR312W	ALT2	P52892	507 aa		2.66	□□□□□ -1.98
SSF2	YDR312W	YGL082W	P53155	381 aa		2.66	□□□□□ -1.98
SSF2	YDR312W	YGR066C	P53242	292 aa		2.66	□□□□□ -1.98
SSF2	YDR312W	TIM10	P87108	93 aa		2.66	□□□□□ -1.98
SSF2	YDR312W	TOF2	Q02208	771 aa		2.66	□□□□□ -1.98
SSF2	YDR312W	RLI1	Q03195	608 aa	Known RBP	2.66	□□□□□ -1.98
SSF2	YDR312W	SLD5	Q03406	294 aa		2.66	□□□□□ -1.98
SSF2	YDR312W	MFB1	Q04922	465 aa		2.66	□□□□□ -1.98
SSF2	YDR312W	HCR1	Q05775	265 aa	Known RBP	2.66	□□□□□ -1.98
SSF2	YDR312W	THP1	Q08231	455 aa		2.66	□□□□□ -1.98
SSF2	YDR312W	MED1	Q12321	566 aa		2.66	□□□□□ -1.98
SSF2	YDR312W	AVL9	Q12500	764 aa		2.66	□□□□□ -1.98
SSF2	YDR312W	SNF2	P22082	1703 aa		2.66	□□□□□ -1.98
SSF2	YDR312W	NUP192	P47054	1683 aa		2.65	□□□□□ -1.98
SSF2	YDR312W	SUC2	P00724	532 aa		2.65	□□□□□ -1.98
SSF2	YDR312W	RPL15A	P05748	204 aa	Known RBP	2.65	□□□□□ -1.98
SSF2	YDR312W	AMD1	P15274	810 aa	Known RBP	2.65	□□□□□ -1.98

Retrieved 100 of 5,963 RNA–protein pairs in 55.3 ms