RNA–Protein interactions for RNA: YPL085W

SEC16, Transcript of COPII vesicle coat protein required for ER transport vesicle budding, yeast

Gene SEC16, Length 6,588 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SEC16	YPL085W	DNF2	Q12675	1612 aa		2.72	□□□□□ -1.97
SEC16	YPL085W	FKH1	P40466	484 aa		2.72	□□□□□ -1.97
SEC16	YPL085W	NAB6	Q03735	1134 aa	Known RBP RIP-Chip data	2.71	□□□□□ -1.97	not detected
SEC16	YPL085W	COG8	Q04632	607 aa		2.71	□□□□□ -1.98
SEC16	YPL085W	QCR6	P00127	147 aa		2.71	□□□□□ -1.98
SEC16	YPL085W	TAF13	P11747	167 aa		2.71	□□□□□ -1.98
SEC16	YPL085W	SSF1	P38789	453 aa	Predicted RBP	2.71	□□□□□ -1.98
SEC16	YPL085W	BUD2	P33314	1104 aa		2.71	□□□□□ -1.98
SEC16	YPL085W	YAF9	P53930	226 aa		2.71	□□□□□ -1.98
SEC16	YPL085W	MNN4	P36044	1178 aa		2.7	□□□□□ -1.98
SEC16	YPL085W	BCK1	Q01389	1478 aa		2.7	□□□□□ -1.98
SEC16	YPL085W	SPC110	P32380	944 aa		2.7	□□□□□ -1.98
SEC16	YPL085W	KAR2	P16474	682 aa	Known RBP	2.7	□□□□□ -1.98
SEC16	YPL085W	NUG1	P40010	520 aa	Known RBP	2.7	□□□□□ -1.98
SEC16	YPL085W	NCB2	Q92317	146 aa		2.7	□□□□□ -1.98
SEC16	YPL085W	YKL023W	P36103	277 aa	Known RBP	2.69	□□□□□ -1.98
SEC16	YPL085W	SSM4	P40318	1319 aa		2.69	□□□□□ -1.98
SEC16	YPL085W	AUS1	Q08409	1394 aa		2.69	□□□□□ -1.98
SEC16	YPL085W	YAH1	Q12184	172 aa	Known RBP	2.69	□□□□□ -1.98
SEC16	YPL085W	KRE5	P22023	1365 aa		2.69	□□□□□ -1.98
SEC16	YPL085W	BFA1	P47113	574 aa		2.69	□□□□□ -1.98
SEC16	YPL085W	ROM2	P51862	1356 aa	Known RBP	2.69	□□□□□ -1.98
SEC16	YPL085W	PRP40	P33203	583 aa	Known RBP	2.69	□□□□□ -1.98
SEC16	YPL085W	NST1	P53935	1240 aa		2.69	□□□□□ -1.98
SEC16	YPL085W	AAD16	Q02895	342 aa		2.68	□□□□□ -1.98
SEC16	YPL085W	EAF7	P53911	425 aa	Known RBP	2.68	□□□□□ -1.98
SEC16	YPL085W	AOS1	Q06624	347 aa		2.68	□□□□□ -1.98
SEC16	YPL085W	YNR029C	P53729	429 aa	Known RBP	2.68	□□□□□ -1.98
SEC16	YPL085W	VMR1	P38735	1592 aa		2.68	□□□□□ -1.98
SEC16	YPL085W	RRT14	P40470	206 aa		2.68	□□□□□ -1.98
SEC16	YPL085W	YJL181W	P46987	611 aa		2.68	□□□□□ -1.98
SEC16	YPL085W	RAD4	P14736	754 aa		2.67	□□□□□ -1.98
SEC16	YPL085W	RSF2	P46974	1380 aa		2.67	□□□□□ -1.98
SEC16	YPL085W	ALG2	P43636	503 aa		2.67	□□□□□ -1.98
SEC16	YPL085W	BRE1	Q07457	700 aa	Known RBP	2.67	□□□□□ -1.98
SEC16	YPL085W	LSP1	Q12230	341 aa	Known RBP	2.67	□□□□□ -1.98
SEC16	YPL085W	OPY1	P38271	328 aa		2.67	□□□□□ -1.98
SEC16	YPL085W	GCN2	P15442	1659 aa		2.67	□□□□□ -1.98
SEC16	YPL085W	GRX1	P25373	110 aa	Known RBP	2.67	□□□□□ -1.98
SEC16	YPL085W	TTI1	P36097	1038 aa		2.67	□□□□□ -1.98
SEC16	YPL085W	PTP3	P40048	928 aa		2.67	□□□□□ -1.98
SEC16	YPL085W	IES2	P40154	320 aa		2.67	□□□□□ -1.98
SEC16	YPL085W	YNL050C	P53952	270 aa		2.67	□□□□□ -1.98
SEC16	YPL085W	MTC5	Q03897	1148 aa		2.67	□□□□□ -1.98
SEC16	YPL085W	ERV41	Q04651	352 aa		2.67	□□□□□ -1.98
SEC16	YPL085W	PSK2	Q08217	1101 aa		2.67	□□□□□ -1.98
SEC16	YPL085W	TY1B-NL2	Q99337	1749 aa	Known RBP	2.66	□□□□□ -1.98
SEC16	YPL085W	SPO22	P40511	975 aa		2.66	□□□□□ -1.98
SEC16	YPL085W	YJR008W	P47085	338 aa		2.66	□□□□□ -1.98
SEC16	YPL085W	SSP2	Q08646	371 aa		2.66	□□□□□ -1.98
SEC16	YPL085W	SPT21	P35209	758 aa		2.66	□□□□□ -1.98
SEC16	YPL085W	RIX1	P38883	763 aa	Predicted RBP	2.66	□□□□□ -1.98
SEC16	YPL085W	UTP22	P53254	1237 aa	Predicted RBP	2.66	□□□□□ -1.98
SEC16	YPL085W	YNL058C	P53947	316 aa		2.66	□□□□□ -1.98
SEC16	YPL085W	NOP53	Q12080	455 aa	Known RBP	2.66	□□□□□ -1.98
SEC16	YPL085W	SAC3	P46674	1301 aa		2.66	□□□□□ -1.98
SEC16	YPL085W	TFG2	P41896	400 aa	Predicted RBP	2.66	□□□□□ -1.98
SEC16	YPL085W	SSF2	Q12153	453 aa	Predicted RBP	2.66	□□□□□ -1.98
SEC16	YPL085W	NHA1	Q99271	985 aa		2.66	□□□□□ -1.98
SEC16	YPL085W	RAD26	P40352	1085 aa		2.66	□□□□□ -1.98
SEC16	YPL085W	UBP10	P53874	792 aa	Predicted RBP	2.66	□□□□□ -1.98
SEC16	YPL085W	PHM7	Q12252	991 aa		2.66	□□□□□ -1.98
SEC16	YPL085W	PDR11	P40550	1411 aa		2.66	□□□□□ -1.98
SEC16	YPL085W	RKM3	P38222	552 aa		2.65	□□□□□ -1.98
SEC16	YPL085W	CLB3	P24870	427 aa		2.65	□□□□□ -1.98
SEC16	YPL085W	TAF8	Q03750	510 aa		2.65	□□□□□ -1.99
SEC16	YPL085W	MAK16	P10962	306 aa	Predicted RBP	2.65	□□□□□ -1.99
SEC16	YPL085W	KIP3	P53086	805 aa	Known RBP	2.65	□□□□□ -1.99
SEC16	YPL085W	GYP7	P48365	746 aa		2.65	□□□□□ -1.99
SEC16	YPL085W	RPP2B	P02400	110 aa	Known RBP	2.64	□□□□□ -1.99
SEC16	YPL085W	RAD50	P12753	1312 aa		2.64	□□□□□ -1.99
SEC16	YPL085W	ULS1	Q08562	1619 aa		2.64	□□□□□ -1.99
SEC16	YPL085W	HYR1	P40581	163 aa	Known RBP	2.64	□□□□□ -1.99
SEC16	YPL085W	MPP10	P47083	593 aa	Known RBP	2.64	□□□□□ -1.99
SEC16	YPL085W	RPS0B	P46654	252 aa	Known RBP	2.64	□□□□□ -1.99
SEC16	YPL085W	LAM6	Q08001	693 aa		2.64	□□□□□ -1.99
SEC16	YPL085W	DNM1	P54861	757 aa		2.64	□□□□□ -1.99
SEC16	YPL085W	NOP2	P40991	618 aa	Known RBP	2.63	□□□□□ -1.99
SEC16	YPL085W	ALD3	P54114	506 aa		2.63	□□□□□ -1.99
SEC16	YPL085W	BDF1	P35817	686 aa		2.63	□□□□□ -1.99
SEC16	YPL085W	ISW1	P38144	1129 aa		2.63	□□□□□ -1.99
SEC16	YPL085W	YIR014W	P40570	242 aa		2.63	□□□□□ -1.99
SEC16	YPL085W	SLM3	Q12093	417 aa		2.63	□□□□□ -1.99
SEC16	YPL085W	EPS1	P40557	701 aa		2.63	□□□□□ -1.99
SEC16	YPL085W	SWE1	P32944	819 aa		2.63	□□□□□ -1.99
SEC16	YPL085W	CIR2	Q08822	631 aa		2.63	□□□□□ -1.99
SEC16	YPL085W	NUP145	P49687	1317 aa		2.63	□□□□□ -1.99
SEC16	YPL085W	RTR1	P40084	226 aa	Predicted RBP	2.63	□□□□□ -1.99
SEC16	YPL085W	CST6	P40535	587 aa		2.63	□□□□□ -1.99
SEC16	YPL085W	MSH6	Q03834	1242 aa		2.63	□□□□□ -1.99
SEC16	YPL085W	CHZ1	P40019	153 aa	Predicted RBP	2.62	□□□□□ -1.99
SEC16	YPL085W	RTC4	P53850	401 aa		2.62	□□□□□ -1.99
SEC16	YPL085W	RAT1	Q02792	1006 aa	Known RBP	2.62	□□□□□ -1.99
SEC16	YPL085W	PKH1	Q03407	766 aa		2.62	□□□□□ -1.99
SEC16	YPL085W	PXA1	P41909	870 aa		2.62	□□□□□ -1.99
SEC16	YPL085W	VPS5	Q92331	675 aa		2.62	□□□□□ -1.99
SEC16	YPL085W	MSH4	P40965	878 aa	Predicted RBP	2.62	□□□□□ -1.99
SEC16	YPL085W	YPP1	P46951	817 aa		2.62	□□□□□ -1.99
SEC16	YPL085W	YDL073W	Q07454	984 aa		2.62	□□□□□ -1.99
SEC16	YPL085W	IML1	P47170	1584 aa		2.62	□□□□□ -1.99

Retrieved 100 of 5,963 RNA–protein pairs in 11.7 ms