RNA–Protein interactions for RNA: YLR397C

AFG2, Transcript of ATPase of the CDC48/PAS1/SEC18 (AAA) family, forms a hexameric complex, yeastyeast

Gene AFG2, Length 2,343 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
AFG2YLR397C SIT1P39980 628 aa8.59□□□□□ -1.03
AFG2YLR397C VPS27P40343 622 aaKnown RBP8.59□□□□□ -1.03
AFG2YLR397C YMR1P47147 688 aaKnown RBP RIP-Chip data8.59□□□□□ -1.03not detected
AFG2YLR397C HOS3Q02959 697 aaKnown RBP8.59□□□□□ -1.03
AFG2YLR397C RPC82P32349 654 aa8.58□□□□□ -1.04
AFG2YLR397C PHO87P25360 923 aa8.58□□□□□ -1.04
AFG2YLR397C PDS5Q04264 1277 aa8.58□□□□□ -1.04
AFG2YLR397C TRM3Q07527 1436 aa8.58□□□□□ -1.04
AFG2YLR397C ARP5P53946 755 aa8.57□□□□□ -1.04
AFG2YLR397C PAN1P32521 1480 aa8.57□□□□□ -1.04
AFG2YLR397C DNA2P38859 1522 aa8.57□□□□□ -1.04
AFG2YLR397C TOA1P32773 286 aa8.57□□□□□ -1.04
AFG2YLR397C YNL035CP53962 389 aaKnown RBP8.57□□□□□ -1.04
AFG2YLR397C YLL054CQ12244 843 aa8.57□□□□□ -1.04
AFG2YLR397C SUB1P54000 292 aaKnown RBP8.56□□□□□ -1.04
AFG2YLR397C RNT1Q02555 471 aa8.56□□□□□ -1.04
AFG2YLR397C ERV41Q04651 352 aa8.56□□□□□ -1.04
AFG2YLR397C HOT1Q03213 719 aa8.55□□□□□ -1.04
AFG2YLR397C APL5Q08951 932 aaKnown RBP8.55□□□□□ -1.04
AFG2YLR397C STU1P38198 1513 aa8.55□□□□□ -1.04
AFG2YLR397C ALD3P54114 506 aa8.55□□□□□ -1.04
AFG2YLR397C LCD1Q04377 747 aa8.55□□□□□ -1.04
AFG2YLR397C VPS72Q03388 795 aa8.54□□□□□ -1.04
AFG2YLR397C RRP15Q06511 250 aaPredicted RBP8.54□□□□□ -1.04
AFG2YLR397C MAK11P20484 414 aaKnown RBP8.54□□□□□ -1.04
AFG2YLR397C ESC2Q06340 456 aa8.53□□□□□ -1.04
AFG2YLR397C PUS1Q12211 544 aaKnown RBP8.53□□□□□ -1.04
AFG2YLR397C NFI1Q12216 726 aa8.53□□□□□ -1.04
AFG2YLR397C SFI1Q12369 946 aa8.53□□□□□ -1.04
AFG2YLR397C YOL087CQ99247 1116 aa8.53□□□□□ -1.04
AFG2YLR397C PEA2P40091 420 aa8.52□□□□□ -1.05
AFG2YLR397C YGL081WP53156 320 aa8.52□□□□□ -1.05
AFG2YLR397C SML1Q04964 104 aa8.52□□□□□ -1.05
AFG2YLR397C MDM38Q08179 573 aa8.52□□□□□ -1.05
AFG2YLR397C SWI3P32591 825 aa8.52□□□□□ -1.05
AFG2YLR397C TCD1P38756 429 aa8.52□□□□□ -1.05
AFG2YLR397C AIM20P40451 204 aa8.52□□□□□ -1.05
AFG2YLR397C MHP1P43638 1398 aa8.51□□□□□ -1.05
AFG2YLR397C MFT1P33441 392 aaKnown RBP8.51□□□□□ -1.05
AFG2YLR397C IRC20Q06554 1556 aa8.5□□□□□ -1.05
AFG2YLR397C DNM1P54861 757 aa8.5□□□□□ -1.05
AFG2YLR397C RKM3P38222 552 aa8.49□□□□□ -1.05
AFG2YLR397C LAM1P38851 1228 aa8.49□□□□□ -1.05
AFG2YLR397C PEX19Q07418 342 aa8.49□□□□□ -1.05
AFG2YLR397C ORM2Q06144 216 aa8.49□□□□□ -1.05
AFG2YLR397C DPH5P32469 300 aaPredicted RBP8.48□□□□□ -1.05
AFG2YLR397C ZUO1P32527 433 aaKnown RBP8.48□□□□□ -1.05
AFG2YLR397C NUF2P33895 451 aa8.48□□□□□ -1.05
AFG2YLR397C OLA1P38219 394 aaKnown RBP8.48□□□□□ -1.05
AFG2YLR397C SPT16P32558 1035 aaKnown RBP8.47□□□□□ -1.05
AFG2YLR397C RTT107P38850 1070 aa8.47□□□□□ -1.05
AFG2YLR397C PSR1Q07800 427 aa8.47□□□□□ -1.05
AFG2YLR397C CDC45Q08032 650 aa8.47□□□□□ -1.05
AFG2YLR397C TLG2Q08144 397 aa8.47□□□□□ -1.05
AFG2YLR397C MNR2P35724 969 aa8.46□□□□□ -1.05
AFG2YLR397C CHZ1P40019 153 aaPredicted RBP8.46□□□□□ -1.05
AFG2YLR397C MRS2Q01926 470 aa8.46□□□□□ -1.05
AFG2YLR397C GEA1P47102 1408 aaPredicted RBP8.46□□□□□ -1.06
AFG2YLR397C VPS41P38959 992 aa8.46□□□□□ -1.06
AFG2YLR397C VID30P53076 958 aa8.46□□□□□ -1.06
AFG2YLR397C VPS30Q02948 557 aa8.46□□□□□ -1.06
AFG2YLR397C YCF1P39109 1515 aaKnown RBP8.45□□□□□ -1.06
AFG2YLR397C RAD3P06839 778 aa8.45□□□□□ -1.06
AFG2YLR397C TPS3P38426 1054 aaKnown RBP8.45□□□□□ -1.06
AFG2YLR397C NDL1Q06568 189 aa8.45□□□□□ -1.06
AFG2YLR397C AOS1Q06624 347 aa8.45□□□□□ -1.06
AFG2YLR397C SEC39Q12745 709 aa8.45□□□□□ -1.06
AFG2YLR397C GCN2P15442 1659 aa8.45□□□□□ -1.06
AFG2YLR397C NUP145P49687 1317 aa8.45□□□□□ -1.06
AFG2YLR397C LSP1Q12230 341 aaKnown RBP8.45□□□□□ -1.06
AFG2YLR397C YVC1Q12324 675 aa8.45□□□□□ -1.06
AFG2YLR397C TIM11P81449 96 aaPredicted RBP8.44□□□□□ -1.06
AFG2YLR397C TSC11P40061 1430 aa8.43□□□□□ -1.06
AFG2YLR397C GIN4Q12263 1142 aa8.43□□□□□ -1.06
AFG2YLR397C YGL082WP53155 381 aa8.43□□□□□ -1.06
AFG2YLR397C PXR1P53335 271 aaPredicted RBP8.43□□□□□ -1.06
AFG2YLR397C DAL5P15365 543 aa8.42□□□□□ -1.06
AFG2YLR397C MIC60P36112 540 aa8.42□□□□□ -1.06
AFG2YLR397C PIM1P36775 1133 aa8.42□□□□□ -1.06
AFG2YLR397C PRP31P49704 494 aaPredicted RBP8.42□□□□□ -1.06
AFG2YLR397C PSO2P30620 661 aa8.42□□□□□ -1.06
AFG2YLR397C ISW1P38144 1129 aa8.42□□□□□ -1.06
AFG2YLR397C GYL1Q04322 720 aa8.42□□□□□ -1.06
AFG2YLR397C YKL068W-AQ3E826 78 aa8.42□□□□□ -1.06
AFG2YLR397C VPS5Q92331 675 aa8.42□□□□□ -1.06
AFG2YLR397C RAD9P14737 1309 aa8.41□□□□□ -1.06
AFG2YLR397C NUP157P40064 1391 aaKnown RBP8.41□□□□□ -1.06
AFG2YLR397C TIM50Q02776 476 aa8.41□□□□□ -1.06
AFG2YLR397C YDL144CQ07589 356 aa8.41□□□□□ -1.06
AFG2YLR397C YPL225WQ08971 146 aaKnown RBP8.41□□□□□ -1.06
AFG2YLR397C SUI2P20459 304 aaKnown RBP8.4□□□□□ -1.06
AFG2YLR397C GCD6P32501 712 aaKnown RBP8.4□□□□□ -1.06
AFG2YLR397C ARO80Q04052 950 aa8.4□□□□□ -1.06
AFG2YLR397C CYC8P14922 966 aa8.4□□□□□ -1.07
AFG2YLR397C TFG1P41895 735 aaPredicted RBP8.4□□□□□ -1.07
AFG2YLR397C MPP10P47083 593 aaKnown RBP8.4□□□□□ -1.07
AFG2YLR397C HUL5P53119 910 aa8.4□□□□□ -1.07
AFG2YLR397C CIR2Q08822 631 aa8.4□□□□□ -1.07
AFG2YLR397C NOP56Q12460 504 aaKnown RBP RIP-Chip data8.4□□□□□ -1.07not detected
AFG2YLR397C NUP159P40477 1460 aa8.4□□□□□ -1.07
Retrieved 100 of 5,963 RNA–protein pairs in 23.7 ms