RNA–Protein interactions for RNA: YLR006C

SSK1, Transcript of Cytoplasmic phosphorelay intermediate osmosensor and regulator, yeastyeast

Gene SSK1, Length 2,139 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SSK1YLR006C RTS3P53289 263 aa7.3□□□□□ -1.24
SSK1YLR006C SUB1P54000 292 aaKnown RBP7.3□□□□□ -1.24
SSK1YLR006C PSH1Q12161 406 aa7.3□□□□□ -1.24
SSK1YLR006C PAM1P37304 830 aaKnown RBP7.29□□□□□ -1.24
SSK1YLR006C ISW1P38144 1129 aa7.29□□□□□ -1.24
SSK1YLR006C SSF1P38789 453 aaPredicted RBP7.28□□□□□ -1.24
SSK1YLR006C YJR008WP47085 338 aa7.28□□□□□ -1.24
SSK1YLR006C DOS2P54858 310 aa7.28□□□□□ -1.24
SSK1YLR006C SSP1P38871 571 aa7.28□□□□□ -1.24
SSK1YLR006C OSW7P43611 510 aa7.28□□□□□ -1.24
SSK1YLR006C TY3B-IQ7LHG5 1498 aaKnown RBP7.28□□□□□ -1.24
SSK1YLR006C BRN1P38170 754 aa7.27□□□□□ -1.25
SSK1YLR006C SEC7P11075 2009 aaKnown RBP7.27□□□□□ -1.25
SSK1YLR006C TAF5P38129 798 aa7.27□□□□□ -1.25
SSK1YLR006C DOP1Q03921 1698 aa7.26□□□□□ -1.25
SSK1YLR006C VMR1P38735 1592 aa7.26□□□□□ -1.25
SSK1YLR006C HIF1Q12373 385 aa7.26□□□□□ -1.25
SSK1YLR006C PDS5Q04264 1277 aa7.25□□□□□ -1.25
SSK1YLR006C MAM3Q12296 706 aa7.25□□□□□ -1.25
SSK1YLR006C MET5P47169 1442 aa7.25□□□□□ -1.25
SSK1YLR006C RAV1P47104 1357 aa7.24□□□□□ -1.25
SSK1YLR006C PDR11P40550 1411 aa7.23□□□□□ -1.25
SSK1YLR006C NST1P53935 1240 aa7.23□□□□□ -1.25
SSK1YLR006C PDR1P12383 1068 aa7.22□□□□□ -1.25
SSK1YLR006C KIP3P53086 805 aaKnown RBP7.22□□□□□ -1.25
SSK1YLR006C IML1P47170 1584 aa7.22□□□□□ -1.25
SSK1YLR006C NUP188P52593 1655 aaKnown RBP7.22□□□□□ -1.25
SSK1YLR006C RTC1Q08281 1341 aa7.22□□□□□ -1.25
SSK1YLR006C CFT1Q06632 1357 aaKnown RBP7.22□□□□□ -1.25
SSK1YLR006C GEF1P37020 779 aa7.21□□□□□ -1.25
SSK1YLR006C FUN12P39730 1002 aaKnown RBP7.21□□□□□ -1.25
SSK1YLR006C NUP192P47054 1683 aa7.21□□□□□ -1.25
SSK1YLR006C DRS2P39524 1355 aa7.2□□□□□ -1.26
SSK1YLR006C OCA5P38738 679 aa7.19□□□□□ -1.26
SSK1YLR006C ZDS1P50111 915 aaKnown RBP7.19□□□□□ -1.26
SSK1YLR006C MLP1Q02455 1875 aaKnown RBP7.18□□□□□ -1.26
SSK1YLR006C ESL2P36168 1195 aa7.18□□□□□ -1.26
SSK1YLR006C SSA1P10591 642 aaKnown RBP7.18□□□□□ -1.26
SSK1YLR006C SUB2Q07478 446 aaKnown RBP7.15□□□□□ -1.26
SSK1YLR006C DNF2Q12675 1612 aa7.15□□□□□ -1.27
SSK1YLR006C SSA2P10592 639 aaKnown RBP7.13□□□□□ -1.27
SSK1YLR006C BRE1Q07457 700 aaKnown RBP7.13□□□□□ -1.27
SSK1YLR006C TRM3Q07527 1436 aa7.12□□□□□ -1.27
SSK1YLR006C KIN1P13185 1064 aa7.12□□□□□ -1.27
SSK1YLR006C SPE2P21182 396 aa7.12□□□□□ -1.27
SSK1YLR006C DAL5P15365 543 aa7.12□□□□□ -1.27
SSK1YLR006C UBX5Q06682 500 aa7.12□□□□□ -1.27
SSK1YLR006C RRN6P32786 894 aa7.11□□□□□ -1.27
SSK1YLR006C SNF2P22082 1703 aa7.1□□□□□ -1.27
SSK1YLR006C RTG3P38165 486 aa7.1□□□□□ -1.27
SSK1YLR006C NHA1Q99271 985 aa7.1□□□□□ -1.27
SSK1YLR006C SCT1P32784 759 aa7.09□□□□□ -1.27
SSK1YLR006C DEF1P35732 738 aaKnown RBP7.09□□□□□ -1.28
SSK1YLR006C CDC45Q08032 650 aa7.09□□□□□ -1.28
SSK1YLR006C NAB3P38996 802 aaKnown RBP RIP-Chip data7.08□□□□□ -1.28not detected
SSK1YLR006C VPS27P40343 622 aaKnown RBP7.08□□□□□ -1.28
SSK1YLR006C AIM21P40563 679 aa7.08□□□□□ -1.28
SSK1YLR006C RVB2Q12464 471 aaKnown RBP7.08□□□□□ -1.28
SSK1YLR006C RPC31P17890 251 aa7.07□□□□□ -1.28
SSK1YLR006C SPB4P25808 606 aaPredicted RBP7.07□□□□□ -1.28
SSK1YLR006C TAF8Q03750 510 aa7.07□□□□□ -1.28
SSK1YLR006C FPR3P38911 411 aaKnown RBP7.07□□□□□ -1.28
SSK1YLR006C PMC1P38929 1173 aaPredicted RBP7.07□□□□□ -1.28
SSK1YLR006C ALD4P46367 519 aaKnown RBP7.06□□□□□ -1.28
SSK1YLR006C YDL144CQ07589 356 aa7.06□□□□□ -1.28
SSK1YLR006C RPP0P05317 312 aaKnown RBP7.06□□□□□ -1.28
SSK1YLR006C TAF13P11747 167 aa7.06□□□□□ -1.28
SSK1YLR006C GAL11P19659 1081 aa7.06□□□□□ -1.28
SSK1YLR006C YAP3P38749 330 aa7.06□□□□□ -1.28
SSK1YLR006C YAF9P53930 226 aa7.06□□□□□ -1.28
SSK1YLR006C SEN54Q02825 467 aaPredicted RBP7.06□□□□□ -1.28
SSK1YLR006C RPA135P22138 1203 aaKnown RBP7.05□□□□□ -1.28
SSK1YLR006C TYS1P36421 394 aaKnown RBP7.05□□□□□ -1.28
SSK1YLR006C TIF4632P39936 914 aaKnown RBP7.05□□□□□ -1.28
SSK1YLR006C CHZ1P40019 153 aaPredicted RBP7.05□□□□□ -1.28
SSK1YLR006C RAD9P14737 1309 aa7.05□□□□□ -1.28
SSK1YLR006C TRK1P12685 1235 aa7.04□□□□□ -1.28
SSK1YLR006C TY4A-JP47023 414 aa7.04□□□□□ -1.28
SSK1YLR006C RAD2P07276 1031 aa7.04□□□□□ -1.28
SSK1YLR006C RPS0AP32905 252 aaKnown RBP7.04□□□□□ -1.28
SSK1YLR006C BCK1Q01389 1478 aa7.03□□□□□ -1.28
SSK1YLR006C RIM101P33400 625 aa7.03□□□□□ -1.28
SSK1YLR006C GUA1P38625 525 aaKnown RBP7.03□□□□□ -1.28
SSK1YLR006C MPP10P47083 593 aaKnown RBP7.03□□□□□ -1.28
SSK1YLR006C SUI2P20459 304 aaKnown RBP7.01□□□□□ -1.29
SSK1YLR006C TOM20P35180 183 aa7.01□□□□□ -1.29
SSK1YLR006C YEF3P16521 1044 aaKnown RBP7□□□□□ -1.29
SSK1YLR006C IPL1P38991 367 aa7□□□□□ -1.29
SSK1YLR006C FKH1P40466 484 aa7□□□□□ -1.29
SSK1YLR006C GIR2Q03768 265 aaPredicted RBP7□□□□□ -1.29
SSK1YLR006C CAB1Q04430 367 aa7□□□□□ -1.29
SSK1YLR006C MPE1P35728 441 aaKnown RBP7□□□□□ -1.29
SSK1YLR006C RPT2P40327 437 aaKnown RBP7□□□□□ -1.29
SSK1YLR006C YPR148CQ06523 435 aa6.99□□□□□ -1.29
SSK1YLR006C SPT16P32558 1035 aaKnown RBP6.98□□□□□ -1.29
SSK1YLR006C IME2P32581 645 aa6.98□□□□□ -1.29
SSK1YLR006C DSF2P38213 736 aa6.97□□□□□ -1.29
SSK1YLR006C NMD2P38798 1089 aaKnown RBP6.97□□□□□ -1.29
SSK1YLR006C CST6P40535 587 aa6.97□□□□□ -1.29
SSK1YLR006C GRX3Q03835 250 aa6.97□□□□□ -1.29
Retrieved 100 of 5,963 RNA–protein pairs in 13.7 ms