RNA–Protein interactions for RNA: ENST00000636977.1

CLN3-253, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,969 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-253ENST00000636977 KIAA0556O60303 1618 aa20.84■□□□□ 0.93
CLN3-253ENST00000636977 C11orf95C9JLR9 678 aaPredicted RBP20.84■□□□□ 0.93
CLN3-253ENST00000636977 ABCC5O15440 1437 aa20.83■□□□□ 0.93
CLN3-253ENST00000636977 KIAA0586Q9BVV6 1533 aa20.83■□□□□ 0.93
CLN3-253ENST00000636977 EIF4G2P78344 907 aaKnown RBP eCLIP20.81■□□□□ 0.921e-9■■■■□ 22.4
CLN3-253ENST00000636977 NBPF8Q3BBV2 869 aa20.81■□□□□ 0.92
CLN3-253ENST00000636977 CCDC184Q52MB2 194 aa20.79■□□□□ 0.92
CLN3-253ENST00000636977 PRG4Q92954 1404 aaPredicted RBP20.79■□□□□ 0.92
CLN3-253ENST00000636977 GRIN2AQ12879 1464 aa20.79■□□□□ 0.92
CLN3-253ENST00000636977 ANKRD30BQ9BXX2 1392 aa20.78■□□□□ 0.92
CLN3-253ENST00000636977 HNRNPUQ00839 825 aaKnown RBP eCLIP20.77■□□□□ 0.92
CLN3-253ENST00000636977 RAPGEF6Q8TEU7 1601 aa20.76■□□□□ 0.91
CLN3-253ENST00000636977 SLC4A1APQ9BWU0 796 aaKnown RBP20.76■□□□□ 0.91
CLN3-253ENST00000636977 EIF4G3O43432 1585 aaKnown RBP20.76■□□□□ 0.91
CLN3-253ENST00000636977 FBLN2P98095 1184 aa20.76■□□□□ 0.91
CLN3-253ENST00000636977 DNMT1P26358 1616 aaKnown RBP20.75■□□□□ 0.91
CLN3-253ENST00000636977 NEFLP07196 543 aa20.75■□□□□ 0.91
CLN3-253ENST00000636977 ROCK1Q13464 1354 aa20.75■□□□□ 0.91
CLN3-253ENST00000636977 ZNF777Q9ULD5 760 aaPredicted RBP20.74■□□□□ 0.91
CLN3-253ENST00000636977 PLB1Q6P1J6 1458 aa20.74■□□□□ 0.91
CLN3-253ENST00000636977 CHMP7Q8WUX9 453 aaPredicted RBP20.71■□□□□ 0.91
CLN3-253ENST00000636977 RPRD2Q5VT52 1461 aaKnown RBP20.71■□□□□ 0.91
CLN3-253ENST00000636977 CFDP1Q9UEE9 299 aaPredicted RBP20.71■□□□□ 0.91
CLN3-253ENST00000636977 CDK11AQ9UQ88 783 aaPredicted RBP20.71■□□□□ 0.91
CLN3-253ENST00000636977 TEX14Q8IWB6 1497 aa20.7■□□□□ 0.9
CLN3-253ENST00000636977 IRX6P78412 446 aaPredicted RBP20.69■□□□□ 0.9
CLN3-253ENST00000636977 CCDC7Q96M83 1385 aa20.68■□□□□ 0.9
CLN3-253ENST00000636977 CNTLNQ9NXG0 1405 aa20.68■□□□□ 0.9
CLN3-253ENST00000636977 CEP170Q5SW79 1584 aa20.68■□□□□ 0.9
CLN3-253ENST00000636977 CAMSAP2Q08AD1 1489 aa20.68■□□□□ 0.9
CLN3-253ENST00000636977 NCOA1Q15788 1441 aa20.67■□□□□ 0.9
CLN3-253ENST00000636977 TROQ12816 1431 aaPredicted RBP20.67■□□□□ 0.9
CLN3-253ENST00000636977 KIF14Q15058 1648 aa20.67■□□□□ 0.9
CLN3-253ENST00000636977 PZPP20742 1482 aa20.65■□□□□ 0.9
CLN3-253ENST00000636977 GPATCH8Q9UKJ3 1502 aaKnown RBP20.65■□□□□ 0.9
CLN3-253ENST00000636977 ERCC6Q03468 1493 aa20.64■□□□□ 0.89
CLN3-253ENST00000636977 PRKRIP1Q9H875 184 aaPredicted RBP20.63■□□□□ 0.89
CLN3-253ENST00000636977 KIF7Q2M1P5 1343 aa20.63■□□□□ 0.89
CLN3-253ENST00000636977 FAM9BQ8IZU0 186 aa20.62■□□□□ 0.89
CLN3-253ENST00000636977 JPH4Q96JJ6 628 aa20.62■□□□□ 0.89
CLN3-253ENST00000636977 ZNF326Q5BKZ1 582 aaKnown RBP20.61■□□□□ 0.89
CLN3-253ENST00000636977 CNGB1Q14028 1251 aaPredicted RBP20.61■□□□□ 0.89
CLN3-253ENST00000636977 SPATA31E1Q6ZUB1 1445 aa20.61■□□□□ 0.89
CLN3-253ENST00000636977 SYNJ2O15056 1496 aa20.59■□□□□ 0.89
CLN3-253ENST00000636977 MAGI1Q96QZ7 1491 aaPredicted RBP20.59■□□□□ 0.89
CLN3-253ENST00000636977 PKD2Q13563 968 aa20.58■□□□□ 0.89
CLN3-253ENST00000636977 MRS2Q9HD23 443 aa20.57■□□□□ 0.88
CLN3-253ENST00000636977 POLR3GLQ9BT43 218 aa20.55■□□□□ 0.88
CLN3-253ENST00000636977 RBM19Q9Y4C8 960 aaKnown RBP20.53■□□□□ 0.88
CLN3-253ENST00000636977 ITSN2Q9NZM3 1697 aa20.53■□□□□ 0.88
CLN3-253ENST00000636977 KIAA1107Q9UPP5 1409 aa20.53■□□□□ 0.88
CLN3-253ENST00000636977 CARMIL2Q6F5E8 1435 aa20.52■□□□□ 0.87
CLN3-253ENST00000636977 ADGBQ8N7X0 1667 aa20.51■□□□□ 0.87
CLN3-253ENST00000636977 NUP160Q12769 1436 aa20.51■□□□□ 0.87
CLN3-253ENST00000636977 PLEKHD1A6NEE1 506 aa20.5■□□□□ 0.87
CLN3-253ENST00000636977 ADCY10Q96PN6 1610 aa20.5■□□□□ 0.87
CLN3-253ENST00000636977 ANKRD30AQ9BXX3 1397 aa20.5■□□□□ 0.87
CLN3-253ENST00000636977 ADGRL2O95490 1459 aa20.5■□□□□ 0.87
CLN3-253ENST00000636977 ANKRD50Q9ULJ7 1429 aa20.5■□□□□ 0.87
CLN3-253ENST00000636977 CROCC2H7BZ55 1655 aa20.49■□□□□ 0.87
CLN3-253ENST00000636977 MBD5Q9P267 1494 aa20.49■□□□□ 0.87
CLN3-253ENST00000636977 ATP10BO94823 1461 aa20.48■□□□□ 0.87
CLN3-253ENST00000636977 BCORL1Q5H9F3 1711 aa20.47■□□□□ 0.87
CLN3-253ENST00000636977 USP47Q96K76 1375 aa20.47■□□□□ 0.87
CLN3-253ENST00000636977 SENP3-EIF4A1A0A087X0R7 540 aa20.47■□□□□ 0.87
CLN3-253ENST00000636977 HNRNPMP52272 730 aaKnown RBP eCLIP20.46■□□□□ 0.87
CLN3-253ENST00000636977 NUP155O75694 1391 aa20.46■□□□□ 0.87
CLN3-253ENST00000636977 CDC42BPAQ5VT25 1732 aa20.46■□□□□ 0.87
CLN3-253ENST00000636977 ABCC10Q5T3U5 1492 aa20.45■□□□□ 0.86
CLN3-253ENST00000636977 DHX29Q7Z478 1369 aaKnown RBP20.44■□□□□ 0.86
CLN3-253ENST00000636977 C9orf84Q5VXU9 1444 aa20.44■□□□□ 0.86
CLN3-253ENST00000636977 ABCA8O94911 1581 aa20.43■□□□□ 0.86
CLN3-253ENST00000636977 KDM2AQ9Y2K7 1162 aa20.43■□□□□ 0.86
CLN3-253ENST00000636977 POLR1AO95602 1720 aaPredicted RBP20.43■□□□□ 0.86
CLN3-253ENST00000636977 ZBED9Q6R2W3 1325 aa20.4■□□□□ 0.86
CLN3-253ENST00000636977 TSPY4P0CV99 314 aa20.39■□□□□ 0.85
CLN3-253ENST00000636977 TSPY10P0CW01 314 aa20.39■□□□□ 0.85
CLN3-253ENST00000636977 KDM5CP41229 1560 aa20.37■□□□□ 0.85
CLN3-253ENST00000636977 CARD11Q9BXL7 1154 aa20.36■□□□□ 0.85
CLN3-253ENST00000636977 KIF15Q9NS87 1388 aa20.36■□□□□ 0.85
CLN3-253ENST00000636977 DCAF11Q8TEB1 546 aa20.34■□□□□ 0.85
CLN3-253ENST00000636977 ERICH6Q7L0X2 663 aa20.34■□□□□ 0.85
CLN3-253ENST00000636977 B4GALNT3Q6L9W6 998 aa20.33■□□□□ 0.85
CLN3-253ENST00000636977 SHANK2Q9UPX8 1470 aa20.33■□□□□ 0.85
CLN3-253ENST00000636977 ST20-MTHFSA0A0A6YYL1 179 aa20.33■□□□□ 0.84
CLN3-253ENST00000636977 PTPRGP23470 1445 aa20.32■□□□□ 0.84
CLN3-253ENST00000636977 PPP4R2Q9NY27 417 aa20.31■□□□□ 0.84
CLN3-253ENST00000636977 UHRF1BP1Q6BDS2 1440 aa20.31■□□□□ 0.84
CLN3-253ENST00000636977 RALGAPBQ86X10 1494 aa20.3■□□□□ 0.84
CLN3-253ENST00000636977 MSH5O43196 834 aa20.29■□□□□ 0.84
CLN3-253ENST00000636977 SAMD9LQ8IVG5 1584 aa20.28■□□□□ 0.84
CLN3-253ENST00000636977 KDM5DQ9BY66 1539 aa20.26■□□□□ 0.83
CLN3-253ENST00000636977 RGL3Q3MIN7 710 aa20.25■□□□□ 0.83
CLN3-253ENST00000636977 CDC42BPBQ9Y5S2 1711 aa20.25■□□□□ 0.83
CLN3-253ENST00000636977 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20.25■□□□□ 0.83
CLN3-253ENST00000636977 PNISRQ8TF01 805 aaKnown RBP20.24■□□□□ 0.83
CLN3-253ENST00000636977 ERICH6BQ5W0A0 696 aa20.24■□□□□ 0.83
CLN3-253ENST00000636977 ARHGEF12Q9NZN5 1544 aa20.23■□□□□ 0.83
CLN3-253ENST00000636977 ARHGEF5Q12774 1597 aa20.23■□□□□ 0.83
CLN3-253ENST00000636977 CCDC141Q6ZP82 1450 aa20.23■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 88.3 ms