RNA–Protein interactions for RNA: ENST00000636977.1

CLN3-253, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,969 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-253ENST00000636977 NISCHQ9Y2I1 1504 aa30.84■■■□□ 2.53
CLN3-253ENST00000636977 SHROOM4Q9ULL8 1493 aa26.54■■□□□ 1.84
CLN3-253ENST00000636977 CCDC180Q9P1Z9 1646 aa26.07■■□□□ 1.76
CLN3-253ENST00000636977 ZCCHC6Q5VYS8 1495 aaKnown RBP26.07■■□□□ 1.76
CLN3-253ENST00000636977 SUPT5HO00267 1087 aaKnown RBP26.01■■□□□ 1.75
CLN3-253ENST00000636977 DCAF8L2P0C7V8 631 aa25.78■■□□□ 1.72
CLN3-253ENST00000636977 CHIC1Q5VXU3 224 aa25.23■■□□□ 1.63
CLN3-253ENST00000636977 MYO15BQ96JP2 1530 aa25.21■■□□□ 1.63
CLN3-253ENST00000636977 DCAF1Q9Y4B6 1507 aa25.17■■□□□ 1.62
CLN3-253ENST00000636977 SCRIBQ14160 1630 aa24.65■■□□□ 1.54
CLN3-253ENST00000636977 LOC105371045A0A1W2PR82 267 aa24.6■■□□□ 1.53
CLN3-253ENST00000636977 ABCC9O60706 1549 aa24.59■■□□□ 1.53
CLN3-253ENST00000636977 PCGF6Q9BYE7 350 aa24.53■■□□□ 1.52
CLN3-253ENST00000636977 RSF1Q96T23 1441 aaPredicted RBP24.47■■□□□ 1.51
CLN3-253ENST00000636977 HRCP23327 699 aa24.46■■□□□ 1.51
CLN3-253ENST00000636977 RB1CC1Q8TDY2 1594 aa24.24■■□□□ 1.47
CLN3-253ENST00000636977 CECR2Q9BXF3 1484 aa24.18■■□□□ 1.46
CLN3-253ENST00000636977 PPARGC1BQ86YN6 1023 aaKnown RBP24.14■■□□□ 1.45
CLN3-253ENST00000636977 NACADO15069 1562 aa24.14■■□□□ 1.45
CLN3-253ENST00000636977 TRIM41Q8WV44 630 aa24.13■■□□□ 1.45
CLN3-253ENST00000636977 FAM9AQ8IZU1 332 aaPredicted RBP24.08■■□□□ 1.44
CLN3-253ENST00000636977 MROH2BQ7Z745 1585 aa24.05■■□□□ 1.44
CLN3-253ENST00000636977 EHMT2Q96KQ7 1210 aa23.97■■□□□ 1.43
CLN3-253ENST00000636977 TRIM26Q12899 539 aaPredicted RBP23.94■■□□□ 1.42
CLN3-253ENST00000636977 WIZO95785 1651 aa23.93■■□□□ 1.42
CLN3-253ENST00000636977 BAZ1AQ9NRL2 1556 aaPredicted RBP23.67■■□□□ 1.38
CLN3-253ENST00000636977 EIF4G1Q04637 1599 aaKnown RBP23.55■■□□□ 1.36
CLN3-253ENST00000636977 UNC13AQ9UPW8 1703 aa23.5■■□□□ 1.35
CLN3-253ENST00000636977 SMARCA4P51532 1647 aa23.47■■□□□ 1.35
CLN3-253ENST00000636977 TOP2AP11388 1531 aaKnown RBP23.45■■□□□ 1.34
CLN3-253ENST00000636977 ABCC8Q09428 1581 aa23.45■■□□□ 1.34
CLN3-253ENST00000636977 CCDC88BA6NC98 1476 aa23.44■■□□□ 1.34
CLN3-253ENST00000636977 PABPN1Q86U42 306 aaKnown RBP eCLIP23.4■■□□□ 1.34
CLN3-253ENST00000636977 PELP1Q8IZL8 1130 aaKnown RBP23.4■■□□□ 1.34
CLN3-253ENST00000636977 SMARCA2P51531 1590 aa23.37■■□□□ 1.33
CLN3-253ENST00000636977 ZEB1P37275 1124 aaPredicted RBP23.3■■□□□ 1.32
CLN3-253ENST00000636977 SOGA1O94964 1423 aa23.24■■□□□ 1.31
CLN3-253ENST00000636977 BICRAQ9NZM4 1560 aa23.22■■□□□ 1.31
CLN3-253ENST00000636977 TTBK1Q5TCY1 1321 aaPredicted RBP23.18■■□□□ 1.3
CLN3-253ENST00000636977 RUSC2Q8N2Y8 1516 aa23.16■■□□□ 1.3
CLN3-253ENST00000636977 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.12■■□□□ 1.29
CLN3-253ENST00000636977 CEP162Q5TB80 1403 aa23.07■■□□□ 1.28
CLN3-253ENST00000636977 CSRNP3Q8WYN3 585 aa23.04■■□□□ 1.28
CLN3-253ENST00000636977 UBTFP17480 764 aaKnown RBP23.01■■□□□ 1.27
CLN3-253ENST00000636977 TNIKQ9UKE5 1360 aa22.98■■□□□ 1.27
CLN3-253ENST00000636977 CCER1Q8TC90 406 aaPredicted RBP22.97■■□□□ 1.27
CLN3-253ENST00000636977 WRNQ14191 1432 aaPredicted RBP eCLIP22.97■■□□□ 1.27
CLN3-253ENST00000636977 PEG3Q9GZU2 1588 aa22.95■■□□□ 1.26
CLN3-253ENST00000636977 EEA1Q15075 1411 aa22.9■■□□□ 1.26
CLN3-253ENST00000636977 ATAD2BQ9ULI0 1458 aa22.89■■□□□ 1.25
CLN3-253ENST00000636977 SYNJ1O43426 1573 aa22.88■■□□□ 1.25
CLN3-253ENST00000636977 GOLGA3Q08378 1498 aa22.84■■□□□ 1.25
CLN3-253ENST00000636977 BAZ1BQ9UIG0 1483 aaKnown RBP22.82■■□□□ 1.24
CLN3-253ENST00000636977 RANGAP1P46060 587 aaPredicted RBP22.69■■□□□ 1.22
CLN3-253ENST00000636977 CEP164Q9UPV0 1460 aa22.69■■□□□ 1.22
CLN3-253ENST00000636977 SCAF1Q9H7N4 1312 aaKnown RBP22.66■■□□□ 1.22
CLN3-253ENST00000636977 KIF21BO75037 1637 aa22.64■■□□□ 1.21
CLN3-253ENST00000636977 RAPGEF2Q9Y4G8 1499 aa22.64■■□□□ 1.21
CLN3-253ENST00000636977 CLIP1P30622 1438 aa22.63■■□□□ 1.21
CLN3-253ENST00000636977 MYT1Q01538 1121 aa22.59■■□□□ 1.21
CLN3-253ENST00000636977 HNRNPUL2Q1KMD3 747 aaKnown RBP22.57■■□□□ 1.2
CLN3-253ENST00000636977 TOP2BQ02880 1626 aa22.52■■□□□ 1.2
CLN3-253ENST00000636977 DIEXFQ68CQ4 756 aaKnown RBP22.52■■□□□ 1.2
CLN3-253ENST00000636977 VPS8Q8N3P4 1428 aa22.5■■□□□ 1.19
CLN3-253ENST00000636977 BIVM-ERCC5R4GMW8 1640 aa22.41■■□□□ 1.18
CLN3-253ENST00000636977 APLP2Q06481 763 aa22.4■■□□□ 1.18
CLN3-253ENST00000636977 NCAPD3P42695 1498 aa22.39■■□□□ 1.17
CLN3-253ENST00000636977 NEUROD1Q13562 356 aa22.38■■□□□ 1.17
CLN3-253ENST00000636977 CUX1P39880 1505 aa22.37■■□□□ 1.17
CLN3-253ENST00000636977 HMGXB3Q12766 1538 aa22.34■■□□□ 1.17
CLN3-253ENST00000636977 PRXQ9BXM0 1461 aa22.34■■□□□ 1.17
CLN3-253ENST00000636977 ACIN1Q9UKV3 1341 aaKnown RBP22.33■■□□□ 1.16
CLN3-253ENST00000636977 ZNF316A6NFI3 1004 aaPredicted RBP22.32■■□□□ 1.16
CLN3-253ENST00000636977 ARAP1Q96P48 1450 aa22.28■■□□□ 1.16
CLN3-253ENST00000636977 KANK4Q5T7N3 995 aaPredicted RBP22.27■■□□□ 1.16
CLN3-253ENST00000636977 ERICH3Q5RHP9 1530 aa22.25■■□□□ 1.15
CLN3-253ENST00000636977 CFTRP13569 1480 aa22.24■■□□□ 1.15
CLN3-253ENST00000636977 KIF27Q86VH2 1401 aa22.21■■□□□ 1.15
CLN3-253ENST00000636977 GTF3C3Q9Y5Q9 886 aa22.13■■□□□ 1.13
CLN3-253ENST00000636977 CENPBP07199 599 aaPredicted RBP22.11■■□□□ 1.13
CLN3-253ENST00000636977 MIER1Q8N108 512 aa22.1■■□□□ 1.13
CLN3-253ENST00000636977 YTHDC1Q96MU7 727 aaKnown RBP22.1■■□□□ 1.13
CLN3-253ENST00000636977 ARHGAP35Q9NRY4 1499 aa22.08■■□□□ 1.13
CLN3-253ENST00000636977 CUX2O14529 1486 aa22.06■■□□□ 1.12
CLN3-253ENST00000636977 DHX57Q6P158 1386 aaKnown RBP22.04■■□□□ 1.12
CLN3-253ENST00000636977 IGF1RP08069 1367 aa22.04■■□□□ 1.12
CLN3-253ENST00000636977 CADPSQ9ULU8 1353 aa22.01■■□□□ 1.11
CLN3-253ENST00000636977 ITGAEP38570 1179 aa21.99■■□□□ 1.11
CLN3-253ENST00000636977 RRBP1Q9P2E9 1410 aaKnown RBP21.97■■□□□ 1.11
CLN3-253ENST00000636977 PRDM2Q13029 1718 aa21.96■■□□□ 1.11
CLN3-253ENST00000636977 FGD5Q6ZNL6 1462 aa21.96■■□□□ 1.11
CLN3-253ENST00000636977 CARMIL1Q5VZK9 1371 aa21.92■■□□□ 1.1
CLN3-253ENST00000636977 CCNB3Q8WWL7 1395 aa21.91■■□□□ 1.1
CLN3-253ENST00000636977 P3H3Q8IVL6 736 aa21.88■■□□□ 1.09
CLN3-253ENST00000636977 CC2D2AQ9P2K1 1620 aa21.87■■□□□ 1.09
CLN3-253ENST00000636977 CLSPNQ9HAW4 1339 aa21.86■■□□□ 1.09
CLN3-253ENST00000636977 FANCD2Q9BXW9 1451 aa21.82■■□□□ 1.08
CLN3-253ENST00000636977 RAD54L2Q9Y4B4 1467 aa21.81■■□□□ 1.08
CLN3-253ENST00000636977 TIAM1Q13009 1591 aa21.79■■□□□ 1.08
CLN3-253ENST00000636977 ATP1B4Q9UN42 357 aaPredicted RBP21.78■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms