RNA–Protein interactions for RNA: ENST00000621814.4

CCDC88A-214, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5 BASIC

Gene CCDC88A, Length 3,089 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-214ENST00000621814 TCOF1Q13428 1488 aaKnown RBP17.99■□□□□ 0.47
CCDC88A-214ENST00000621814 MIA2Q96PC5 1412 aa17.97■□□□□ 0.47
CCDC88A-214ENST00000621814 WDR62O43379 1518 aa17.97■□□□□ 0.47
CCDC88A-214ENST00000621814 NBPF8Q3BBV2 869 aa17.97■□□□□ 0.47
CCDC88A-214ENST00000621814 CCDC184Q52MB2 194 aa17.96■□□□□ 0.47
CCDC88A-214ENST00000621814 FAM9BQ8IZU0 186 aa17.96■□□□□ 0.47
CCDC88A-214ENST00000621814 KDM5BQ9UGL1 1544 aa17.95■□□□□ 0.46
CCDC88A-214ENST00000621814 PRG4Q92954 1404 aaPredicted RBP17.95■□□□□ 0.46
CCDC88A-214ENST00000621814 DAPK1P53355 1430 aa17.95■□□□□ 0.46
CCDC88A-214ENST00000621814 IFT140Q96RY7 1462 aa17.94■□□□□ 0.46
CCDC88A-214ENST00000621814 ABCC5O15440 1437 aa17.93■□□□□ 0.46
CCDC88A-214ENST00000621814 ERCC6Q03468 1493 aa17.93■□□□□ 0.46
CCDC88A-214ENST00000621814 DISP1Q96F81 1524 aa17.93■□□□□ 0.46
CCDC88A-214ENST00000621814 KIAA0586Q9BVV6 1533 aa17.93■□□□□ 0.46
CCDC88A-214ENST00000621814 NUP153P49790 1475 aaKnown RBP17.92■□□□□ 0.46
CCDC88A-214ENST00000621814 PLB1Q6P1J6 1458 aa17.9■□□□□ 0.46
CCDC88A-214ENST00000621814 JPH4Q96JJ6 628 aa17.89■□□□□ 0.45
CCDC88A-214ENST00000621814 GRIN2AQ12879 1464 aa17.88■□□□□ 0.45
CCDC88A-214ENST00000621814 ANKRD30BQ9BXX2 1392 aa17.88■□□□□ 0.45
CCDC88A-214ENST00000621814 SENP3-EIF4A1A0A087X0R7 540 aa17.88■□□□□ 0.45
CCDC88A-214ENST00000621814 MRS2Q9HD23 443 aa17.88■□□□□ 0.45
CCDC88A-214ENST00000621814 GCC2Q8IWJ2 1684 aa17.87■□□□□ 0.45
CCDC88A-214ENST00000621814 KIAA0556O60303 1618 aa17.87■□□□□ 0.45
CCDC88A-214ENST00000621814 AKNAQ7Z591 1439 aa17.86■□□□□ 0.45
CCDC88A-214ENST00000621814 PKD2Q13563 968 aa17.86■□□□□ 0.45
CCDC88A-214ENST00000621814 CCDC7Q96M83 1385 aa17.84■□□□□ 0.45
CCDC88A-214ENST00000621814 PLEKHD1A6NEE1 506 aa17.84■□□□□ 0.45
CCDC88A-214ENST00000621814 PRKRIP1Q9H875 184 aaPredicted RBP17.84■□□□□ 0.45
CCDC88A-214ENST00000621814 ROCK1Q13464 1354 aa17.84■□□□□ 0.45
CCDC88A-214ENST00000621814 KDM2AQ9Y2K7 1162 aa17.83■□□□□ 0.44
CCDC88A-214ENST00000621814 RAPGEF6Q8TEU7 1601 aa17.82■□□□□ 0.44
CCDC88A-214ENST00000621814 KIF7Q2M1P5 1343 aa17.82■□□□□ 0.44
CCDC88A-214ENST00000621814 CNTLNQ9NXG0 1405 aa17.81■□□□□ 0.44
CCDC88A-214ENST00000621814 EIF4G3O43432 1585 aaKnown RBP17.81■□□□□ 0.44
CCDC88A-214ENST00000621814 TROQ12816 1431 aaPredicted RBP17.81■□□□□ 0.44
CCDC88A-214ENST00000621814 RPRD2Q5VT52 1461 aaKnown RBP17.81■□□□□ 0.44
CCDC88A-214ENST00000621814 MYT1Q01538 1121 aa17.8■□□□□ 0.44
CCDC88A-214ENST00000621814 CAMSAP2Q08AD1 1489 aa17.79■□□□□ 0.44
CCDC88A-214ENST00000621814 HNRNPMP52272 730 aaKnown RBP eCLIP17.78■□□□□ 0.44
CCDC88A-214ENST00000621814 DNMT1P26358 1616 aaKnown RBP17.78■□□□□ 0.44
CCDC88A-214ENST00000621814 NCOA1Q15788 1441 aa17.77■□□□□ 0.44
CCDC88A-214ENST00000621814 GPATCH8Q9UKJ3 1502 aaKnown RBP17.77■□□□□ 0.43
CCDC88A-214ENST00000621814 TSPY4P0CV99 314 aa17.76■□□□□ 0.43
CCDC88A-214ENST00000621814 TSPY10P0CW01 314 aa17.76■□□□□ 0.43
CCDC88A-214ENST00000621814 CARMIL2Q6F5E8 1435 aa17.76■□□□□ 0.43
CCDC88A-214ENST00000621814 RBM19Q9Y4C8 960 aaKnown RBP17.76■□□□□ 0.43
CCDC88A-214ENST00000621814 NUP155O75694 1391 aa17.75■□□□□ 0.43
CCDC88A-214ENST00000621814 ANKRD30AQ9BXX3 1397 aa17.74■□□□□ 0.43
CCDC88A-214ENST00000621814 TEX14Q8IWB6 1497 aa17.74■□□□□ 0.43
CCDC88A-214ENST00000621814 CEP170Q5SW79 1584 aa17.74■□□□□ 0.43
CCDC88A-214ENST00000621814 KIF14Q15058 1648 aa17.73■□□□□ 0.43
CCDC88A-214ENST00000621814 SYNJ2O15056 1496 aa17.73■□□□□ 0.43
CCDC88A-214ENST00000621814 PZPP20742 1482 aa17.72■□□□□ 0.43
CCDC88A-214ENST00000621814 ANKRD50Q9ULJ7 1429 aa17.71■□□□□ 0.43
CCDC88A-214ENST00000621814 MAGI1Q96QZ7 1491 aaPredicted RBP17.7■□□□□ 0.42
CCDC88A-214ENST00000621814 CARD11Q9BXL7 1154 aa17.7■□□□□ 0.42
CCDC88A-214ENST00000621814 USP47Q96K76 1375 aa17.7■□□□□ 0.42
CCDC88A-214ENST00000621814 DCAF11Q8TEB1 546 aa17.7■□□□□ 0.42
CCDC88A-214ENST00000621814 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.69■□□□□ 0.422e-7■□□□□ 11.3
CCDC88A-214ENST00000621814 KIAA1107Q9UPP5 1409 aa17.69■□□□□ 0.42
CCDC88A-214ENST00000621814 RGL3Q3MIN7 710 aa17.67■□□□□ 0.42
CCDC88A-214ENST00000621814 SPATA31E1Q6ZUB1 1445 aa17.67■□□□□ 0.42
CCDC88A-214ENST00000621814 B4GALNT3Q6L9W6 998 aa17.65■□□□□ 0.42
CCDC88A-214ENST00000621814 ATP10BO94823 1461 aa17.64■□□□□ 0.41
CCDC88A-214ENST00000621814 ST20-MTHFSA0A0A6YYL1 179 aa17.63■□□□□ 0.41
CCDC88A-214ENST00000621814 ANP32EQ9BTT0 268 aa17.63■□□□□ 0.41
CCDC88A-214ENST00000621814 C9orf84Q5VXU9 1444 aa17.63■□□□□ 0.41
CCDC88A-214ENST00000621814 ZBED9Q6R2W3 1325 aa17.61■□□□□ 0.41
CCDC88A-214ENST00000621814 KIF15Q9NS87 1388 aa17.61■□□□□ 0.41
CCDC88A-214ENST00000621814 TMC1Q8TDI8 760 aa17.61■□□□□ 0.41
CCDC88A-214ENST00000621814 PTPRGP23470 1445 aa17.6■□□□□ 0.41
CCDC88A-214ENST00000621814 NUP160Q12769 1436 aa17.6■□□□□ 0.41
CCDC88A-214ENST00000621814 SALL2Q9Y467 1007 aaPredicted RBP17.59■□□□□ 0.41
CCDC88A-214ENST00000621814 ITSN2Q9NZM3 1697 aa17.59■□□□□ 0.41
CCDC88A-214ENST00000621814 PPP4R2Q9NY27 417 aa17.58■□□□□ 0.41
CCDC88A-214ENST00000621814 ADGRL2O95490 1459 aa17.56■□□□□ 0.4
CCDC88A-214ENST00000621814 DHX29Q7Z478 1369 aaKnown RBP17.55■□□□□ 0.4
CCDC88A-214ENST00000621814 ADGBQ8N7X0 1667 aa17.53■□□□□ 0.4
CCDC88A-214ENST00000621814 ROCK2O75116 1388 aaKnown RBP17.53■□□□□ 0.4
CCDC88A-214ENST00000621814 ABCC10Q5T3U5 1492 aa17.53■□□□□ 0.4
CCDC88A-214ENST00000621814 MBD5Q9P267 1494 aa17.52■□□□□ 0.39
CCDC88A-214ENST00000621814 BCORL1Q5H9F3 1711 aa17.51■□□□□ 0.39
CCDC88A-214ENST00000621814 NBPF1Q3BBV0 1214 aa17.51■□□□□ 0.39
CCDC88A-214ENST00000621814 ABCA8O94911 1581 aa17.5■□□□□ 0.39
CCDC88A-214ENST00000621814 CDC42BPAQ5VT25 1732 aa17.5■□□□□ 0.39
CCDC88A-214ENST00000621814 ADCY10Q96PN6 1610 aa17.49■□□□□ 0.39
CCDC88A-214ENST00000621814 PNISRQ8TF01 805 aaKnown RBP17.48■□□□□ 0.39
CCDC88A-214ENST00000621814 MSH5O43196 834 aa17.48■□□□□ 0.39
CCDC88A-214ENST00000621814 CROCC2H7BZ55 1655 aa17.48■□□□□ 0.39
CCDC88A-214ENST00000621814 NUDCQ9Y266 331 aa17.46■□□□□ 0.38
CCDC88A-214ENST00000621814 CCDC144AA2RUR9 1427 aa17.45■□□□□ 0.38
CCDC88A-214ENST00000621814 CC2D1BQ5T0F9 858 aaKnown RBP17.45■□□□□ 0.38
CCDC88A-214ENST00000621814 ERICH6BQ5W0A0 696 aa17.45■□□□□ 0.38
CCDC88A-214ENST00000621814 KDM5CP41229 1560 aa17.44■□□□□ 0.38
CCDC88A-214ENST00000621814 ERICH6Q7L0X2 663 aa17.44■□□□□ 0.38
CCDC88A-214ENST00000621814 RALGAPBQ86X10 1494 aa17.43■□□□□ 0.38
CCDC88A-214ENST00000621814 ARID4BQ4LE39 1312 aaPredicted RBP17.43■□□□□ 0.38
CCDC88A-214ENST00000621814 SHANK2Q9UPX8 1470 aa17.43■□□□□ 0.38
CCDC88A-214ENST00000621814 CCDC136Q96JN2 1154 aa17.43■□□□□ 0.38
CCDC88A-214ENST00000621814 CCDC141Q6ZP82 1450 aa17.43■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms