RNA–Protein interactions for RNA: ENST00000621814.4

CCDC88A-214, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5 BASIC

Gene CCDC88A, Length 3,089 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-214ENST00000621814 NISCHQ9Y2I1 1504 aa26.44■■□□□ 1.82
CCDC88A-214ENST00000621814 SHROOM4Q9ULL8 1493 aa23.05■■□□□ 1.28
CCDC88A-214ENST00000621814 SUPT5HO00267 1087 aaKnown RBP22.64■■□□□ 1.21
CCDC88A-214ENST00000621814 DCAF8L2P0C7V8 631 aa22.59■■□□□ 1.21
CCDC88A-214ENST00000621814 ZCCHC6Q5VYS8 1495 aaKnown RBP22.31■■□□□ 1.16
CCDC88A-214ENST00000621814 CCDC180Q9P1Z9 1646 aa22.23■■□□□ 1.15
CCDC88A-214ENST00000621814 CHIC1Q5VXU3 224 aa21.77■■□□□ 1.08
CCDC88A-214ENST00000621814 MYO15BQ96JP2 1530 aa21.62■■□□□ 1.05
CCDC88A-214ENST00000621814 DCAF1Q9Y4B6 1507 aa21.47■■□□□ 1.03
CCDC88A-214ENST00000621814 LOC105371045A0A1W2PR82 267 aa21.32■■□□□ 1
CCDC88A-214ENST00000621814 PCGF6Q9BYE7 350 aa21.3■■□□□ 1
CCDC88A-214ENST00000621814 SCRIBQ14160 1630 aa21.21■□□□□ 0.99
CCDC88A-214ENST00000621814 ABCC9O60706 1549 aa21.09■□□□□ 0.97
CCDC88A-214ENST00000621814 HRCP23327 699 aa21.08■□□□□ 0.97
CCDC88A-214ENST00000621814 RSF1Q96T23 1441 aaPredicted RBP21.02■□□□□ 0.96
CCDC88A-214ENST00000621814 EHMT2Q96KQ7 1210 aa21■□□□□ 0.95
CCDC88A-214ENST00000621814 FAM9AQ8IZU1 332 aaPredicted RBP20.99■□□□□ 0.95
CCDC88A-214ENST00000621814 TRIM41Q8WV44 630 aa20.96■□□□□ 0.95
CCDC88A-214ENST00000621814 PPARGC1BQ86YN6 1023 aaKnown RBP20.89■□□□□ 0.93
CCDC88A-214ENST00000621814 CECR2Q9BXF3 1484 aa20.79■□□□□ 0.92
CCDC88A-214ENST00000621814 RB1CC1Q8TDY2 1594 aa20.79■□□□□ 0.92
CCDC88A-214ENST00000621814 TRIM26Q12899 539 aaPredicted RBP20.7■□□□□ 0.9
CCDC88A-214ENST00000621814 NACADO15069 1562 aa20.69■□□□□ 0.9
CCDC88A-214ENST00000621814 MROH2BQ7Z745 1585 aa20.65■□□□□ 0.9
CCDC88A-214ENST00000621814 WIZO95785 1651 aa20.52■□□□□ 0.88
CCDC88A-214ENST00000621814 PABPN1Q86U42 306 aaKnown RBP eCLIP20.36■□□□□ 0.85
CCDC88A-214ENST00000621814 BAZ1AQ9NRL2 1556 aaPredicted RBP20.28■□□□□ 0.84
CCDC88A-214ENST00000621814 TTBK1Q5TCY1 1321 aaPredicted RBP20.28■□□□□ 0.84
CCDC88A-214ENST00000621814 ABCC8Q09428 1581 aa20.17■□□□□ 0.82
CCDC88A-214ENST00000621814 ZEB1P37275 1124 aaPredicted RBP20.16■□□□□ 0.82
CCDC88A-214ENST00000621814 CCDC88BA6NC98 1476 aa20.15■□□□□ 0.82
CCDC88A-214ENST00000621814 SMARCA4P51532 1647 aa20.1■□□□□ 0.81
CCDC88A-214ENST00000621814 TOP2AP11388 1531 aaKnown RBP20.09■□□□□ 0.81
CCDC88A-214ENST00000621814 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.07■□□□□ 0.8
CCDC88A-214ENST00000621814 UBTFP17480 764 aaKnown RBP20.04■□□□□ 0.8
CCDC88A-214ENST00000621814 SOGA1O94964 1423 aa20.02■□□□□ 0.8
CCDC88A-214ENST00000621814 UNC13AQ9UPW8 1703 aa20.02■□□□□ 0.8
CCDC88A-214ENST00000621814 SMARCA2P51531 1590 aa20.01■□□□□ 0.79
CCDC88A-214ENST00000621814 EIF4G1Q04637 1599 aaKnown RBP20.01■□□□□ 0.79
CCDC88A-214ENST00000621814 CCER1Q8TC90 406 aaPredicted RBP19.99■□□□□ 0.79
CCDC88A-214ENST00000621814 CSRNP3Q8WYN3 585 aa19.94■□□□□ 0.78
CCDC88A-214ENST00000621814 RUSC2Q8N2Y8 1516 aa19.92■□□□□ 0.78
CCDC88A-214ENST00000621814 RANGAP1P46060 587 aaPredicted RBP19.89■□□□□ 0.77
CCDC88A-214ENST00000621814 CEP162Q5TB80 1403 aa19.87■□□□□ 0.77
CCDC88A-214ENST00000621814 BICRAQ9NZM4 1560 aa19.84■□□□□ 0.77
CCDC88A-214ENST00000621814 WRNQ14191 1432 aaPredicted RBP eCLIP19.78■□□□□ 0.76
CCDC88A-214ENST00000621814 TNIKQ9UKE5 1360 aa19.77■□□□□ 0.76
CCDC88A-214ENST00000621814 EEA1Q15075 1411 aa19.68■□□□□ 0.74
CCDC88A-214ENST00000621814 BAZ1BQ9UIG0 1483 aaKnown RBP19.67■□□□□ 0.74
CCDC88A-214ENST00000621814 ATAD2BQ9ULI0 1458 aa19.67■□□□□ 0.74
CCDC88A-214ENST00000621814 GOLGA3Q08378 1498 aa19.66■□□□□ 0.74
CCDC88A-214ENST00000621814 HNRNPUL2Q1KMD3 747 aaKnown RBP19.64■□□□□ 0.73
CCDC88A-214ENST00000621814 SYNJ1O43426 1573 aa19.61■□□□□ 0.73
CCDC88A-214ENST00000621814 APLP2Q06481 763 aa19.57■□□□□ 0.72
CCDC88A-214ENST00000621814 PEG3Q9GZU2 1588 aa19.56■□□□□ 0.72
CCDC88A-214ENST00000621814 CEP164Q9UPV0 1460 aa19.53■□□□□ 0.72
CCDC88A-214ENST00000621814 CLIP1P30622 1438 aa19.53■□□□□ 0.72
CCDC88A-214ENST00000621814 DIEXFQ68CQ4 756 aaKnown RBP19.53■□□□□ 0.72
CCDC88A-214ENST00000621814 SCAF1Q9H7N4 1312 aaKnown RBP19.51■□□□□ 0.71
CCDC88A-214ENST00000621814 RAPGEF2Q9Y4G8 1499 aa19.48■□□□□ 0.71
CCDC88A-214ENST00000621814 KIF21BO75037 1637 aa19.36■□□□□ 0.69
CCDC88A-214ENST00000621814 VPS8Q8N3P4 1428 aa19.35■□□□□ 0.69
CCDC88A-214ENST00000621814 NEUROD1Q13562 356 aa19.34■□□□□ 0.69
CCDC88A-214ENST00000621814 ZNF316A6NFI3 1004 aaPredicted RBP19.31■□□□□ 0.68
CCDC88A-214ENST00000621814 ACIN1Q9UKV3 1341 aaKnown RBP19.28■□□□□ 0.68
CCDC88A-214ENST00000621814 YTHDC1Q96MU7 727 aaKnown RBP19.28■□□□□ 0.68
CCDC88A-214ENST00000621814 TOP2BQ02880 1626 aa19.28■□□□□ 0.68
CCDC88A-214ENST00000621814 KANK4Q5T7N3 995 aaPredicted RBP19.24■□□□□ 0.67
CCDC88A-214ENST00000621814 ITGAEP38570 1179 aa19.22■□□□□ 0.67
CCDC88A-214ENST00000621814 NCAPD3P42695 1498 aa19.22■□□□□ 0.67
CCDC88A-214ENST00000621814 CENPBP07199 599 aaPredicted RBP19.21■□□□□ 0.67
CCDC88A-214ENST00000621814 CUX1P39880 1505 aa19.19■□□□□ 0.66
CCDC88A-214ENST00000621814 GTF3C3Q9Y5Q9 886 aa19.18■□□□□ 0.66
CCDC88A-214ENST00000621814 KIF27Q86VH2 1401 aa19.17■□□□□ 0.66
CCDC88A-214ENST00000621814 PRXQ9BXM0 1461 aa19.15■□□□□ 0.66
CCDC88A-214ENST00000621814 BIVM-ERCC5R4GMW8 1640 aa19.13■□□□□ 0.65
CCDC88A-214ENST00000621814 MIER1Q8N108 512 aa19.12■□□□□ 0.65
CCDC88A-214ENST00000621814 HMGXB3Q12766 1538 aa19.11■□□□□ 0.65
CCDC88A-214ENST00000621814 ARAP1Q96P48 1450 aa19.11■□□□□ 0.65
CCDC88A-214ENST00000621814 CFTRP13569 1480 aa19.1■□□□□ 0.65
CCDC88A-214ENST00000621814 ATP1B4Q9UN42 357 aaPredicted RBP19.09■□□□□ 0.65
CCDC88A-214ENST00000621814 P3H3Q8IVL6 736 aa19.07■□□□□ 0.64
CCDC88A-214ENST00000621814 ERICH3Q5RHP9 1530 aa19.05■□□□□ 0.64
CCDC88A-214ENST00000621814 CUX2O14529 1486 aa19.05■□□□□ 0.64
CCDC88A-214ENST00000621814 IGF1RP08069 1367 aa18.98■□□□□ 0.63
CCDC88A-214ENST00000621814 CADPSQ9ULU8 1353 aa18.98■□□□□ 0.63
CCDC88A-214ENST00000621814 ARHGAP35Q9NRY4 1499 aa18.97■□□□□ 0.63
CCDC88A-214ENST00000621814 DHX57Q6P158 1386 aaKnown RBP18.97■□□□□ 0.63
CCDC88A-214ENST00000621814 CARMIL1Q5VZK9 1371 aa18.94■□□□□ 0.62
CCDC88A-214ENST00000621814 CCNB3Q8WWL7 1395 aa18.91■□□□□ 0.62
CCDC88A-214ENST00000621814 FAM50AQ14320 339 aaKnown RBP18.91■□□□□ 0.62
CCDC88A-214ENST00000621814 FGD5Q6ZNL6 1462 aa18.9■□□□□ 0.62
CCDC88A-214ENST00000621814 PELP1Q8IZL8 1130 aaKnown RBP18.87■□□□□ 0.61
CCDC88A-214ENST00000621814 RRBP1Q9P2E9 1410 aaKnown RBP18.84■□□□□ 0.61
CCDC88A-214ENST00000621814 CLSPNQ9HAW4 1339 aa18.81■□□□□ 0.6
CCDC88A-214ENST00000621814 RAD54L2Q9Y4B4 1467 aa18.81■□□□□ 0.6
CCDC88A-214ENST00000621814 CC2D2AQ9P2K1 1620 aa18.8■□□□□ 0.6
CCDC88A-214ENST00000621814 FANCD2Q9BXW9 1451 aa18.8■□□□□ 0.6
CCDC88A-214ENST00000621814 RAB3GAP2Q9H2M9 1393 aa18.78■□□□□ 0.6
CCDC88A-214ENST00000621814 NESP48681 1621 aa18.76■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms