RNA–Protein interactions for RNA: ENST00000620219.4

CPSF1-213, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,462 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-213ENST00000620219 SAMD9Q5K651 1589 aa22.14■■□□□ 1.14
CPSF1-213ENST00000620219 SENP3Q9H4L4 574 aaPredicted RBP22.14■■□□□ 1.13
CPSF1-213ENST00000620219 SUPT6HQ7KZ85 1726 aaKnown RBP22.14■■□□□ 1.13
CPSF1-213ENST00000620219 NUP155O75694 1391 aa22.13■■□□□ 1.13
CPSF1-213ENST00000620219 CFAP43Q8NDM7 1665 aa22.12■■□□□ 1.13
CPSF1-213ENST00000620219 PLPPR3Q6T4P5 718 aa22.12■■□□□ 1.13
CPSF1-213ENST00000620219 PTPRKQ15262 1439 aa22.1■■□□□ 1.13
CPSF1-213ENST00000620219 ARHGEF11O15085 1522 aa22.09■■□□□ 1.13
CPSF1-213ENST00000620219 RAPGEF6Q8TEU7 1601 aa22.07■■□□□ 1.12
CPSF1-213ENST00000620219 AFAP1Q8N556 730 aa22.06■■□□□ 1.12
CPSF1-213ENST00000620219 ATP10BO94823 1461 aa22.06■■□□□ 1.12
CPSF1-213ENST00000620219 SPAG9O60271 1321 aaKnown RBP22.06■■□□□ 1.12
CPSF1-213ENST00000620219 MAGI3Q5TCQ9 1506 aa22.06■■□□□ 1.12
CPSF1-213ENST00000620219 MIA2Q96PC5 1412 aa22.04■■□□□ 1.12
CPSF1-213ENST00000620219 GGT6Q6P531 493 aa22.03■■□□□ 1.12
CPSF1-213ENST00000620219 KIF3BO15066 747 aa22■■□□□ 1.11
CPSF1-213ENST00000620219 RSPH4AQ5TD94 716 aa22■■□□□ 1.11
CPSF1-213ENST00000620219 ARHGAP5Q13017 1502 aa22■■□□□ 1.11
CPSF1-213ENST00000620219 PPP1R15AO75807 674 aaPredicted RBP22■■□□□ 1.11
CPSF1-213ENST00000620219 PTPN23Q9H3S7 1636 aa22■■□□□ 1.11
CPSF1-213ENST00000620219 L3MBTL2Q969R5 705 aa22■■□□□ 1.11
CPSF1-213ENST00000620219 NAIPQ13075 1403 aa21.99■■□□□ 1.11
CPSF1-213ENST00000620219 ANP32CO43423 234 aa21.99■■□□□ 1.11
CPSF1-213ENST00000620219 EIF4G2P78344 907 aaKnown RBP eCLIP21.97■■□□□ 1.11
CPSF1-213ENST00000620219 DAPK1P53355 1430 aa21.97■■□□□ 1.11
CPSF1-213ENST00000620219 KIF15Q9NS87 1388 aa21.97■■□□□ 1.11
CPSF1-213ENST00000620219 DCAF11Q8TEB1 546 aa21.97■■□□□ 1.11
CPSF1-213ENST00000620219 HFM1A2PYH4 1435 aa21.96■■□□□ 1.11
CPSF1-213ENST00000620219 TRHP20396 242 aaPredicted RBP21.96■■□□□ 1.11
CPSF1-213ENST00000620219 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP21.95■■□□□ 1.13e-7■■■□□ 15.5
CPSF1-213ENST00000620219 ACIN1Q9UKV3 1341 aaKnown RBP21.95■■□□□ 1.1
CPSF1-213ENST00000620219 ESF1Q9H501 851 aaKnown RBP21.95■■□□□ 1.1
CPSF1-213ENST00000620219 MLECQ14165 292 aa21.94■■□□□ 1.1
CPSF1-213ENST00000620219 FAM69CQ0P6D2 419 aa21.92■■□□□ 1.1
CPSF1-213ENST00000620219 ABCC5O15440 1437 aa21.92■■□□□ 1.1
CPSF1-213ENST00000620219 ANKRD50Q9ULJ7 1429 aa21.92■■□□□ 1.1
CPSF1-213ENST00000620219 CHD1O14646 1710 aa21.92■■□□□ 1.1
CPSF1-213ENST00000620219 GTF3C3Q9Y5Q9 886 aa21.92■■□□□ 1.1
CPSF1-213ENST00000620219 GPATCH8Q9UKJ3 1502 aaKnown RBP21.92■■□□□ 1.1
CPSF1-213ENST00000620219 TIMELESSQ9UNS1 1208 aa21.91■■□□□ 1.1
CPSF1-213ENST00000620219 CAMSAP2Q08AD1 1489 aa21.91■■□□□ 1.1
CPSF1-213ENST00000620219 STAG3Q9UJ98 1225 aa21.89■■□□□ 1.1
CPSF1-213ENST00000620219 C9orf84Q5VXU9 1444 aa21.89■■□□□ 1.09
CPSF1-213ENST00000620219 MAPKBP1O60336 1514 aa21.88■■□□□ 1.09
CPSF1-213ENST00000620219 ARID4BQ4LE39 1312 aaPredicted RBP21.87■■□□□ 1.09
CPSF1-213ENST00000620219 LRRIQ1Q96JM4 1722 aa21.87■■□□□ 1.09
CPSF1-213ENST00000620219 CARD11Q9BXL7 1154 aa21.86■■□□□ 1.09
CPSF1-213ENST00000620219 ERCC6L2Q5T890 1561 aa21.86■■□□□ 1.09
CPSF1-213ENST00000620219 KIF14Q15058 1648 aa21.85■■□□□ 1.09
CPSF1-213ENST00000620219 BCANQ96GW7 911 aa21.84■■□□□ 1.09
CPSF1-213ENST00000620219 SCAF1Q9H7N4 1312 aaKnown RBP21.84■■□□□ 1.09
CPSF1-213ENST00000620219 HSPA5P11021 654 aaKnown RBP21.82■■□□□ 1.08
CPSF1-213ENST00000620219 RAPGEF3O95398 923 aa21.81■■□□□ 1.08
CPSF1-213ENST00000620219 KANK1Q14678 1352 aa21.79■■□□□ 1.08
CPSF1-213ENST00000620219 SCAPERQ9BY12 1400 aa21.78■■□□□ 1.08
CPSF1-213ENST00000620219 NCOA1Q15788 1441 aa21.77■■□□□ 1.08
CPSF1-213ENST00000620219 AKNAQ7Z591 1439 aa21.74■■□□□ 1.07
CPSF1-213ENST00000620219 WASHC2CQ9Y4E1 1318 aa21.72■■□□□ 1.07
CPSF1-213ENST00000620219 ROCK1Q13464 1354 aa21.72■■□□□ 1.07
CPSF1-213ENST00000620219 ABCC2Q92887 1545 aa21.72■■□□□ 1.07
CPSF1-213ENST00000620219 ASXL2Q76L83 1435 aa21.7■■□□□ 1.07
CPSF1-213ENST00000620219 CCDC141Q6ZP82 1450 aa21.7■■□□□ 1.06
CPSF1-213ENST00000620219 ABCA8O94911 1581 aa21.69■■□□□ 1.06
CPSF1-213ENST00000620219 TCOF1Q13428 1488 aaKnown RBP21.69■■□□□ 1.06
CPSF1-213ENST00000620219 NUTM2DQ5VT03 806 aaPredicted RBP21.69■■□□□ 1.06
CPSF1-213ENST00000620219 CD109Q6YHK3 1445 aa21.67■■□□□ 1.06
CPSF1-213ENST00000620219 CCDC144AA2RUR9 1427 aa21.67■■□□□ 1.06
CPSF1-213ENST00000620219 FAM9BQ8IZU0 186 aa21.64■■□□□ 1.05
CPSF1-213ENST00000620219 PLEKHH2Q8IVE3 1493 aa21.63■■□□□ 1.05
CPSF1-213ENST00000620219 KDM6BO15054 1643 aa21.63■■□□□ 1.05
CPSF1-213ENST00000620219 SENP3-EIF4A1A0A087X0R7 540 aa21.63■■□□□ 1.05
CPSF1-213ENST00000620219 NBPF8Q3BBV2 869 aa21.62■■□□□ 1.05
CPSF1-213ENST00000620219 PLCH2O75038 1416 aa21.62■■□□□ 1.05
CPSF1-213ENST00000620219 SYCP2Q9BX26 1530 aa21.62■■□□□ 1.05
CPSF1-213ENST00000620219 FANCAO15360 1455 aa21.62■■□□□ 1.05
CPSF1-213ENST00000620219 WDR7Q9Y4E6 1490 aa21.6■■□□□ 1.05
CPSF1-213ENST00000620219 ADGRL1O94910 1474 aa21.6■■□□□ 1.05
CPSF1-213ENST00000620219 ROCK2O75116 1388 aaKnown RBP21.59■■□□□ 1.05
CPSF1-213ENST00000620219 TRAPPC8Q9Y2L5 1435 aa21.58■■□□□ 1.05
CPSF1-213ENST00000620219 ITSN2Q9NZM3 1697 aa21.58■■□□□ 1.05
CPSF1-213ENST00000620219 KIAA1107Q9UPP5 1409 aa21.58■■□□□ 1.05
CPSF1-213ENST00000620219 NEFLP07196 543 aa21.57■■□□□ 1.04
CPSF1-213ENST00000620219 ANKRD30BQ9BXX2 1392 aa21.55■■□□□ 1.04
CPSF1-213ENST00000620219 MRS2Q9HD23 443 aa21.55■■□□□ 1.04
CPSF1-213ENST00000620219 ST20-MTHFSA0A0A6YYL1 179 aa21.54■■□□□ 1.04
CPSF1-213ENST00000620219 ABCC10Q5T3U5 1492 aa21.54■■□□□ 1.04
CPSF1-213ENST00000620219 HNRNPUQ00839 825 aaKnown RBP eCLIP21.53■■□□□ 1.04
CPSF1-213ENST00000620219 DNMT1P26358 1616 aaKnown RBP21.53■■□□□ 1.04
CPSF1-213ENST00000620219 SAFB2Q14151 953 aaKnown RBP eCLIP21.53■■□□□ 1.04
CPSF1-213ENST00000620219 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP21.5■■□□□ 1.036e-6■■■■□ 21.5
CPSF1-213ENST00000620219 TMC1Q8TDI8 760 aa21.49■■□□□ 1.03
CPSF1-213ENST00000620219 SALL2Q9Y467 1007 aaPredicted RBP21.49■■□□□ 1.03
CPSF1-213ENST00000620219 STK26Q9P289 416 aa21.48■■□□□ 1.03
CPSF1-213ENST00000620219 KDM5BQ9UGL1 1544 aa21.46■■□□□ 1.03
CPSF1-213ENST00000620219 WASHC2AQ641Q2 1341 aa21.46■■□□□ 1.03
CPSF1-213ENST00000620219 NBPF1Q3BBV0 1214 aa21.46■■□□□ 1.03
CPSF1-213ENST00000620219 CLASP1Q7Z460 1538 aa21.45■■□□□ 1.02
CPSF1-213ENST00000620219 USP47Q96K76 1375 aa21.45■■□□□ 1.02
CPSF1-213ENST00000620219 TTC37Q6PGP7 1564 aa21.44■■□□□ 1.02
CPSF1-213ENST00000620219 C11orf95C9JLR9 678 aaPredicted RBP21.42■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms