RNA–Protein interactions for RNA: ENST00000590061.1

SMAD4-210, Transcript of SMAD family member 4, humanhuman

TSL 4

Gene SMAD4, Length 544 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-210ENST00000590061 METRNQ9UJH8 293 aa11.74□□□□□ -0.53
SMAD4-210ENST00000590061 GOLGA3Q08378 1498 aa11.74□□□□□ -0.53
SMAD4-210ENST00000590061 KIF21BO75037 1637 aa11.74□□□□□ -0.53
SMAD4-210ENST00000590061 POTEB2H3BUK9 544 aa11.73□□□□□ -0.53
SMAD4-210ENST00000590061 SLC39A7Q92504 469 aa11.73□□□□□ -0.53
SMAD4-210ENST00000590061 MAGI1Q96QZ7 1491 aaPredicted RBP11.73□□□□□ -0.53
SMAD4-210ENST00000590061 PRXQ9BXM0 1461 aa11.73□□□□□ -0.53
SMAD4-210ENST00000590061 PCDHB8Q9UN66 801 aa11.73□□□□□ -0.53
SMAD4-210ENST00000590061 RAPGEF2Q9Y4G8 1499 aa11.72□□□□□ -0.53
SMAD4-210ENST00000590061 FHAD1B1AJZ9 1412 aa11.72□□□□□ -0.53
SMAD4-210ENST00000590061 AQRO60306 1485 aaKnown RBP eCLIP11.7□□□□□ -0.54
SMAD4-210ENST00000590061 C7P10643 843 aa11.7□□□□□ -0.54
SMAD4-210ENST00000590061 UBTFP17480 764 aaKnown RBP11.7□□□□□ -0.54
SMAD4-210ENST00000590061 RUSC2Q8N2Y8 1516 aa11.7□□□□□ -0.54
SMAD4-210ENST00000590061 POTEFA5A3E0 1075 aa11.69□□□□□ -0.54
SMAD4-210ENST00000590061 CIZ1Q9ULV3 898 aaPredicted RBP11.69□□□□□ -0.54
SMAD4-210ENST00000590061 EIF4G3O43432 1585 aaKnown RBP11.68□□□□□ -0.54
SMAD4-210ENST00000590061 ZNF608Q9ULD9 1512 aaPredicted RBP11.68□□□□□ -0.54
SMAD4-210ENST00000590061 TNIKQ9UKE5 1360 aa11.67□□□□□ -0.54
SMAD4-210ENST00000590061 ZNF467Q7Z7K2 595 aaPredicted RBP11.67□□□□□ -0.54
SMAD4-210ENST00000590061 CHMP7Q8WUX9 453 aaPredicted RBP11.67□□□□□ -0.54
SMAD4-210ENST00000590061 TMEM106CQ9BVX2 250 aa11.67□□□□□ -0.54
SMAD4-210ENST00000590061 TRIM35Q9UPQ4 493 aa11.67□□□□□ -0.54
SMAD4-210ENST00000590061 PBRM1Q86U86 1689 aa11.67□□□□□ -0.54
SMAD4-210ENST00000590061 SYNJ2O15056 1496 aa11.65□□□□□ -0.54
SMAD4-210ENST00000590061 POTEJP0CG39 1038 aa11.64□□□□□ -0.55
SMAD4-210ENST00000590061 IER5LQ5T953 404 aa11.63□□□□□ -0.55
SMAD4-210ENST00000590061 SNAPC4Q5SXM2 1469 aa11.63□□□□□ -0.55
SMAD4-210ENST00000590061 ADAMTS12P58397 1594 aa11.62□□□□□ -0.55
SMAD4-210ENST00000590061 SLC24A1O60721 1099 aa11.61□□□□□ -0.55
SMAD4-210ENST00000590061 COLQQ9Y215 455 aaPredicted RBP11.61□□□□□ -0.55
SMAD4-210ENST00000590061 LOC105371045A0A1W2PR82 267 aa11.6□□□□□ -0.55
SMAD4-210ENST00000590061 OTUD5Q96G74 571 aa11.6□□□□□ -0.55
SMAD4-210ENST00000590061 GRIN2AQ12879 1464 aa11.58□□□□□ -0.56
SMAD4-210ENST00000590061 PSEN1P49768 467 aa11.56□□□□□ -0.56
SMAD4-210ENST00000590061 RNF25Q96BH1 459 aaPredicted RBP11.56□□□□□ -0.56
SMAD4-210ENST00000590061 KIAA0586Q9BVV6 1533 aa11.55□□□□□ -0.56
SMAD4-210ENST00000590061 IRX5P78411 483 aaPredicted RBP11.55□□□□□ -0.56
SMAD4-210ENST00000590061 PDAP1Q13442 181 aaKnown RBP11.55□□□□□ -0.56
SMAD4-210ENST00000590061 NUP160Q12769 1436 aa11.52□□□□□ -0.56
SMAD4-210ENST00000590061 CEP162Q5TB80 1403 aa11.52□□□□□ -0.56
SMAD4-210ENST00000590061 EFCAB5A4FU69 1503 aa11.52□□□□□ -0.57
SMAD4-210ENST00000590061 CLIP1P30622 1438 aa11.52□□□□□ -0.57
SMAD4-210ENST00000590061 CTTNBP2Q8WZ74 1663 aa11.51□□□□□ -0.57
SMAD4-210ENST00000590061 CARMIL2Q6F5E8 1435 aa11.5□□□□□ -0.57
SMAD4-210ENST00000590061 IQGAP2Q13576 1575 aa11.5□□□□□ -0.57
SMAD4-210ENST00000590061 SEC24BO95487 1268 aa11.48□□□□□ -0.57
SMAD4-210ENST00000590061 PKD2Q13563 968 aa11.48□□□□□ -0.57
SMAD4-210ENST00000590061 JPH4Q96JJ6 628 aa11.47□□□□□ -0.57
SMAD4-210ENST00000590061 RIOK3O14730 519 aaKnown RBP11.46□□□□□ -0.57
SMAD4-210ENST00000590061 ILDR1Q86SU0 546 aaPredicted RBP11.46□□□□□ -0.57
SMAD4-210ENST00000590061 PDCD7Q8N8D1 485 aaKnown RBP11.46□□□□□ -0.57
SMAD4-210ENST00000590061 UGGT2Q9NYU1 1516 aa11.45□□□□□ -0.58
SMAD4-210ENST00000590061 FMN1Q68DA7 1419 aa11.44□□□□□ -0.58
SMAD4-210ENST00000590061 CHD1O14646 1710 aa11.44□□□□□ -0.58
SMAD4-210ENST00000590061 PLCG2P16885 1265 aa11.44□□□□□ -0.58
SMAD4-210ENST00000590061 MAMSTRQ6ZN01 415 aa11.44□□□□□ -0.58
SMAD4-210ENST00000590061 OCEL1Q9H607 264 aa11.44□□□□□ -0.58
SMAD4-210ENST00000590061 CEP170Q5SW79 1584 aa11.42□□□□□ -0.58
SMAD4-210ENST00000590061 CABP2Q9NPB3 220 aa11.41□□□□□ -0.58
SMAD4-210ENST00000590061 VPS8Q8N3P4 1428 aa11.4□□□□□ -0.58
SMAD4-210ENST00000590061 RIMBP3CA6NJZ7 1639 aa11.39□□□□□ -0.59
SMAD4-210ENST00000590061 RIMBP3BA6NNM3 1639 aa11.39□□□□□ -0.59
SMAD4-210ENST00000590061 RIMBP3Q9UFD9 1639 aa11.39□□□□□ -0.59
SMAD4-210ENST00000590061 VGFO15240 615 aaPredicted RBP11.39□□□□□ -0.59
SMAD4-210ENST00000590061 MKRN3Q13064 507 aaKnown RBP11.39□□□□□ -0.59
SMAD4-210ENST00000590061 SCUBE2Q9NQ36 999 aa11.39□□□□□ -0.59
SMAD4-210ENST00000590061 ARHGAP35Q9NRY4 1499 aa11.38□□□□□ -0.59
SMAD4-210ENST00000590061 SAMD9Q5K651 1589 aa11.38□□□□□ -0.59
SMAD4-210ENST00000590061 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP11.38□□□□□ -0.59
SMAD4-210ENST00000590061 ECM2O94769 699 aaPredicted RBP11.38□□□□□ -0.59
SMAD4-210ENST00000590061 RANGAP1P46060 587 aaPredicted RBP11.38□□□□□ -0.59
SMAD4-210ENST00000590061 GOLGA2Q08379 1002 aa11.38□□□□□ -0.59
SMAD4-210ENST00000590061 ZFP91Q96JP5 570 aaPredicted RBP11.38□□□□□ -0.59
SMAD4-210ENST00000590061 ARHGEF11O15085 1522 aa11.37□□□□□ -0.59
SMAD4-210ENST00000590061 CLASP1Q7Z460 1538 aa11.37□□□□□ -0.59
SMAD4-210ENST00000590061 PRG4Q92954 1404 aaPredicted RBP11.36□□□□□ -0.59
SMAD4-210ENST00000590061 SHROOM2Q13796 1616 aa11.35□□□□□ -0.59
SMAD4-210ENST00000590061 RGL2O15211 777 aa11.35□□□□□ -0.59
SMAD4-210ENST00000590061 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.35□□□□□ -0.591e-7■□□□□ 11.2
SMAD4-210ENST00000590061 CDK11AQ9UQ88 783 aaPredicted RBP11.34□□□□□ -0.59
SMAD4-210ENST00000590061 KIAA0556O60303 1618 aa11.34□□□□□ -0.59
SMAD4-210ENST00000590061 CYB5RLQ6IPT4 315 aa11.33□□□□□ -0.6
SMAD4-210ENST00000590061 EFCAB3Q8N7B9 438 aa11.33□□□□□ -0.6
SMAD4-210ENST00000590061 PLSCR2Q9NRY7 297 aa11.33□□□□□ -0.6
SMAD4-210ENST00000590061 DISP1Q96F81 1524 aa11.33□□□□□ -0.6
SMAD4-210ENST00000590061 PTPRGP23470 1445 aa11.33□□□□□ -0.6
SMAD4-210ENST00000590061 CASKIN1Q8WXD9 1431 aa11.33□□□□□ -0.6
SMAD4-210ENST00000590061 ARAP1Q96P48 1450 aa11.32□□□□□ -0.6
SMAD4-210ENST00000590061 FYCO1Q9BQS8 1478 aa11.32□□□□□ -0.6
SMAD4-210ENST00000590061 MAP3K1Q13233 1512 aa11.32□□□□□ -0.6
SMAD4-210ENST00000590061 P3H3Q8IVL6 736 aa11.31□□□□□ -0.6
SMAD4-210ENST00000590061 FHOD3Q2V2M9 1422 aa11.3□□□□□ -0.6
SMAD4-210ENST00000590061 CCDC18Q5T9S5 1454 aa11.3□□□□□ -0.6
SMAD4-210ENST00000590061 DPY19L2Q6NUT2 758 aa11.29□□□□□ -0.6
SMAD4-210ENST00000590061 LCE2DQ5TA82 110 aaPredicted RBP11.27□□□□□ -0.61
SMAD4-210ENST00000590061 BCL11BQ9C0K0 894 aaPredicted RBP11.26□□□□□ -0.61
SMAD4-210ENST00000590061 ATP1B4Q9UN42 357 aaPredicted RBP11.26□□□□□ -0.61
SMAD4-210ENST00000590061 HECW1Q76N89 1606 aa11.26□□□□□ -0.61
SMAD4-210ENST00000590061 MS4A4AQ96JQ5 239 aa11.25□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms