RNA–Protein interactions for RNA: ENST00000590061.1

SMAD4-210, Transcript of SMAD family member 4, humanhuman

TSL 4

Gene SMAD4, Length 544 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-210ENST00000590061 AEBP2Q6ZN18 517 aaPredicted RBP24.34■■□□□ 1.49
SMAD4-210ENST00000590061 CHIC1Q5VXU3 224 aa23.36■■□□□ 1.33
SMAD4-210ENST00000590061 SENP3Q9H4L4 574 aaPredicted RBP20.62■□□□□ 0.89
SMAD4-210ENST00000590061 PHF23Q9BUL5 403 aaPredicted RBP20.54■□□□□ 0.88
SMAD4-210ENST00000590061 FOXD1Q16676 465 aa19.23■□□□□ 0.67
SMAD4-210ENST00000590061 PLPPR3Q6T4P5 718 aa18.74■□□□□ 0.59
SMAD4-210ENST00000590061 PPP6R1Q9UPN7 881 aa18.22■□□□□ 0.51
SMAD4-210ENST00000590061 ADRA2BP18089 450 aa18.14■□□□□ 0.49
SMAD4-210ENST00000590061 PIAS4Q8N2W9 510 aaPredicted RBP17.98■□□□□ 0.47
SMAD4-210ENST00000590061 MSH5O43196 834 aa17.82■□□□□ 0.44
SMAD4-210ENST00000590061 POTEDQ86YR6 584 aa17.22■□□□□ 0.35
SMAD4-210ENST00000590061 NISCHQ9Y2I1 1504 aa16.72■□□□□ 0.27
SMAD4-210ENST00000590061 MAPK8IP2Q13387 824 aaPredicted RBP16.58■□□□□ 0.24
SMAD4-210ENST00000590061 SCAF1Q9H7N4 1312 aaKnown RBP16.5■□□□□ 0.23
SMAD4-210ENST00000590061 PPP4R3CPQ6ZMV5 832 aa16.47■□□□□ 0.23
SMAD4-210ENST00000590061 DMRT2Q9Y5R5 561 aa16.44■□□□□ 0.22
SMAD4-210ENST00000590061 CNKSR2Q8WXI2 1034 aa16.1■□□□□ 0.17
SMAD4-210ENST00000590061 HOXD11P31277 338 aaPredicted RBP15.98■□□□□ 0.15
SMAD4-210ENST00000590061 RNF216Q9NWF9 866 aaPredicted RBP15.9■□□□□ 0.14
SMAD4-210ENST00000590061 NCBP3Q53F19 620 aaKnown RBP15.87■□□□□ 0.13
SMAD4-210ENST00000590061 NPM3O75607 178 aaKnown RBP15.73■□□□□ 0.11
SMAD4-210ENST00000590061 KCNA4P22459 653 aa15.69■□□□□ 0.1
SMAD4-210ENST00000590061 DCAF8L1A6NGE4 600 aa15.59■□□□□ 0.09
SMAD4-210ENST00000590061 DNAJC5BQ9UF47 199 aa15.44■□□□□ 0.06
SMAD4-210ENST00000590061 RNF39Q9H2S5 420 aa15.3■□□□□ 0.04
SMAD4-210ENST00000590061 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.09■□□□□ 0.013e-6■■□□□ 11.7
SMAD4-210ENST00000590061 CACNB1Q02641 598 aaPredicted RBP15.07■□□□□ 0
SMAD4-210ENST00000590061 C1QBPQ07021 282 aaKnown RBP15.03■□□□□ -0
SMAD4-210ENST00000590061 SLC4A2P04920 1241 aa14.99□□□□□ -0.01
SMAD4-210ENST00000590061 U3KPZ7 1027 aaPredicted RBP14.93□□□□□ -0.02
SMAD4-210ENST00000590061 SLC4A1APQ9BWU0 796 aaKnown RBP14.82□□□□□ -0.04
SMAD4-210ENST00000590061 CCDC180Q9P1Z9 1646 aa14.74□□□□□ -0.05
SMAD4-210ENST00000590061 SPINK5Q9NQ38 1064 aaPredicted RBP14.59□□□□□ -0.07
SMAD4-210ENST00000590061 FOXD4L1Q9NU39 408 aa14.53□□□□□ -0.08
SMAD4-210ENST00000590061 MYCNP04198 464 aaPredicted RBP14.52□□□□□ -0.09
SMAD4-210ENST00000590061 ZBTB22O15209 634 aa14.5□□□□□ -0.09
SMAD4-210ENST00000590061 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.49□□□□□ -0.09
SMAD4-210ENST00000590061 HNRNPUL2Q1KMD3 747 aaKnown RBP14.49□□□□□ -0.09
SMAD4-210ENST00000590061 CAPN15O75808 1086 aa14.46□□□□□ -0.09
SMAD4-210ENST00000590061 SAMD1Q6SPF0 538 aaPredicted RBP14.45□□□□□ -0.1
SMAD4-210ENST00000590061 DSG3P32926 999 aa14.41□□□□□ -0.1
SMAD4-210ENST00000590061 APLP2Q06481 763 aa14.41□□□□□ -0.1
SMAD4-210ENST00000590061 ZNF219Q9P2Y4 722 aaPredicted RBP14.33□□□□□ -0.12
SMAD4-210ENST00000590061 TRHP20396 242 aaPredicted RBP14.3□□□□□ -0.12
SMAD4-210ENST00000590061 ATF5Q9Y2D1 282 aaPredicted RBP14.22□□□□□ -0.13
SMAD4-210ENST00000590061 ABCB7O75027 752 aa14.2□□□□□ -0.14
SMAD4-210ENST00000590061 ATXN8OSP0DMR3 200 aa14.07□□□□□ -0.16
SMAD4-210ENST00000590061 CSRNP3Q8WYN3 585 aa14.04□□□□□ -0.16
SMAD4-210ENST00000590061 POLA2Q14181 598 aa14.01□□□□□ -0.17
SMAD4-210ENST00000590061 ABCC9O60706 1549 aa14□□□□□ -0.17
SMAD4-210ENST00000590061 ZCCHC6Q5VYS8 1495 aaKnown RBP13.98□□□□□ -0.17
SMAD4-210ENST00000590061 DCAF1Q9Y4B6 1507 aa13.95□□□□□ -0.18
SMAD4-210ENST00000590061 EHMT2Q96KQ7 1210 aa13.94□□□□□ -0.18
SMAD4-210ENST00000590061 MYO15BQ96JP2 1530 aa13.91□□□□□ -0.18
SMAD4-210ENST00000590061 DCAF8L2P0C7V8 631 aa13.83□□□□□ -0.2
SMAD4-210ENST00000590061 NACADO15069 1562 aa13.83□□□□□ -0.2
SMAD4-210ENST00000590061 ZBTB12Q9Y330 459 aaPredicted RBP13.75□□□□□ -0.21
SMAD4-210ENST00000590061 RB1CC1Q8TDY2 1594 aa13.73□□□□□ -0.21
SMAD4-210ENST00000590061 RBM42Q9BTD8 480 aaKnown RBP13.67□□□□□ -0.22
SMAD4-210ENST00000590061 OSCARQ8IYS5 282 aa13.61□□□□□ -0.23
SMAD4-210ENST00000590061 MKRN4PQ13434 485 aaPredicted RBP13.59□□□□□ -0.23
SMAD4-210ENST00000590061 FBLN2P98095 1184 aa13.51□□□□□ -0.25
SMAD4-210ENST00000590061 AKT1S1Q96B36 256 aa13.46□□□□□ -0.25
SMAD4-210ENST00000590061 SPDYE2BA6NHP3 402 aa13.39□□□□□ -0.27
SMAD4-210ENST00000590061 SPDYE6P0CI01 402 aa13.39□□□□□ -0.27
SMAD4-210ENST00000590061 SPDYE2Q495Y8 402 aa13.39□□□□□ -0.27
SMAD4-210ENST00000590061 POTEHQ6S545 545 aa13.36□□□□□ -0.27
SMAD4-210ENST00000590061 SCRIBQ14160 1630 aa13.35□□□□□ -0.27
SMAD4-210ENST00000590061 REM2Q8IYK8 340 aaPredicted RBP13.33□□□□□ -0.28
SMAD4-210ENST00000590061 SSUH2Q9Y2M2 353 aa13.31□□□□□ -0.28
SMAD4-210ENST00000590061 SHROOM4Q9ULL8 1493 aa13.3□□□□□ -0.28
SMAD4-210ENST00000590061 CHRDL2Q6WN34 429 aa13.28□□□□□ -0.28
SMAD4-210ENST00000590061 UNC13AQ9UPW8 1703 aa13.22□□□□□ -0.29
SMAD4-210ENST00000590061 ZNF692Q9BU19 519 aaPredicted RBP13.22□□□□□ -0.29
SMAD4-210ENST00000590061 PITPNM1O00562 1244 aa13.21□□□□□ -0.29
SMAD4-210ENST00000590061 BICRAQ9NZM4 1560 aa13.12□□□□□ -0.31
SMAD4-210ENST00000590061 PABPN1Q86U42 306 aaKnown RBP eCLIP13.1□□□□□ -0.31
SMAD4-210ENST00000590061 PIP4P2Q8N4L2 257 aa13.06□□□□□ -0.32
SMAD4-210ENST00000590061 FXR2P51116 673 aaKnown RBP eCLIP13.05□□□□□ -0.32
SMAD4-210ENST00000590061 SPDYE1Q8NFV5 336 aaPredicted RBP13.05□□□□□ -0.32
SMAD4-210ENST00000590061 SPDYE4A6NLX3 237 aa13□□□□□ -0.33
SMAD4-210ENST00000590061 BAZ1AQ9NRL2 1556 aaPredicted RBP12.99□□□□□ -0.33
SMAD4-210ENST00000590061 CLEC11AQ9Y240 323 aa12.95□□□□□ -0.34
SMAD4-210ENST00000590061 PROM2Q8N271 834 aa12.88□□□□□ -0.35
SMAD4-210ENST00000590061 CECR2Q9BXF3 1484 aa12.86□□□□□ -0.35
SMAD4-210ENST00000590061 SMARCA4P51532 1647 aa12.86□□□□□ -0.35
SMAD4-210ENST00000590061 RSF1Q96T23 1441 aaPredicted RBP12.86□□□□□ -0.35
SMAD4-210ENST00000590061 SMARCA2P51531 1590 aa12.82□□□□□ -0.36
SMAD4-210ENST00000590061 EIF4G1Q04637 1599 aaKnown RBP12.82□□□□□ -0.36
SMAD4-210ENST00000590061 PRKAR2AP13861 404 aaKnown RBP12.82□□□□□ -0.36
SMAD4-210ENST00000590061 SUPT5HO00267 1087 aaKnown RBP12.8□□□□□ -0.36
SMAD4-210ENST00000590061 PRR29P0C7W0 189 aa12.8□□□□□ -0.36
SMAD4-210ENST00000590061 MROH2BQ7Z745 1585 aa12.8□□□□□ -0.36
SMAD4-210ENST00000590061 PEG3Q9GZU2 1588 aa12.79□□□□□ -0.36
SMAD4-210ENST00000590061 CHADLQ6NUI6 762 aa12.75□□□□□ -0.37
SMAD4-210ENST00000590061 STAG3Q9UJ98 1225 aa12.74□□□□□ -0.37
SMAD4-210ENST00000590061 NCAPD3P42695 1498 aa12.72□□□□□ -0.37
SMAD4-210ENST00000590061 ATAD2BQ9ULI0 1458 aa12.72□□□□□ -0.37
SMAD4-210ENST00000590061 HMGXB3Q12766 1538 aa12.68□□□□□ -0.38
SMAD4-210ENST00000590061 BAZ1BQ9UIG0 1483 aaKnown RBP12.68□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms