RNA–Protein interactions for RNA: ENST00000588857.5

ATG4D-209, Transcript of autophagy related 4D cysteine peptidase, humanhuman

TSL 1 (best)

Gene ATG4D, Length 1,555 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4D-209ENST00000588857 TCOF1Q13428 1488 aaKnown RBP33.62■■■□□ 2.97
ATG4D-209ENST00000588857 MAP3K4Q9Y6R4 1608 aa33.61■■■□□ 2.97
ATG4D-209ENST00000588857 CFDP1Q9UEE9 299 aaPredicted RBP33.61■■■□□ 2.97
ATG4D-209ENST00000588857 ITGAEP38570 1179 aa33.6■■■□□ 2.97
ATG4D-209ENST00000588857 MYO5CQ9NQX4 1742 aa33.59■■■□□ 2.97
ATG4D-209ENST00000588857 CD109Q6YHK3 1445 aa33.58■■■□□ 2.97
ATG4D-209ENST00000588857 PREX2Q70Z35 1606 aa33.57■■■□□ 2.96
ATG4D-209ENST00000588857 PPRC1Q5VV67 1664 aaKnown RBP33.56■■■□□ 2.96
ATG4D-209ENST00000588857 CDC42BPBQ9Y5S2 1711 aa33.54■■■□□ 2.96
ATG4D-209ENST00000588857 TEX14Q8IWB6 1497 aa33.54■■■□□ 2.96
ATG4D-209ENST00000588857 KDM6BO15054 1643 aa33.52■■■□□ 2.96
ATG4D-209ENST00000588857 CAMSAP2Q08AD1 1489 aa33.49■■■□□ 2.95
ATG4D-209ENST00000588857 ZNF777Q9ULD5 760 aaPredicted RBP33.49■■■□□ 2.95
ATG4D-209ENST00000588857 ABCA9Q8IUA7 1624 aa33.49■■■□□ 2.95
ATG4D-209ENST00000588857 ZNF644Q9H582 1327 aaPredicted RBP33.46■■■□□ 2.95
ATG4D-209ENST00000588857 ARHGAP5Q13017 1502 aa33.46■■■□□ 2.95
ATG4D-209ENST00000588857 PLCH2O75038 1416 aa33.43■■■□□ 2.94
ATG4D-209ENST00000588857 COL17A1Q9UMD9 1497 aaPredicted RBP33.42■■■□□ 2.94
ATG4D-209ENST00000588857 DNMT1P26358 1616 aaKnown RBP33.4■■■□□ 2.94
ATG4D-209ENST00000588857 ARAP3Q8WWN8 1544 aa33.38■■■□□ 2.93
ATG4D-209ENST00000588857 SAMD9LQ8IVG5 1584 aa33.37■■■□□ 2.93
ATG4D-209ENST00000588857 EFCAB2Q5VUJ9 269 aa33.34■■■□□ 2.93
ATG4D-209ENST00000588857 DAPK1P53355 1430 aa33.34■■■□□ 2.93
ATG4D-209ENST00000588857 PTPRKQ15262 1439 aa33.34■■■□□ 2.93
ATG4D-209ENST00000588857 ABCC5O15440 1437 aa33.31■■■□□ 2.92
ATG4D-209ENST00000588857 PLEKHH2Q8IVE3 1493 aa33.3■■■□□ 2.92
ATG4D-209ENST00000588857 CROCC2H7BZ55 1655 aa33.28■■■□□ 2.92
ATG4D-209ENST00000588857 ARHGEF5Q12774 1597 aa33.27■■■□□ 2.92
ATG4D-209ENST00000588857 CHIC2Q9UKJ5 165 aa33.25■■■□□ 2.91
ATG4D-209ENST00000588857 HNRNPMP52272 730 aaKnown RBP eCLIP33.24■■■□□ 2.91
ATG4D-209ENST00000588857 SETD5Q9C0A6 1442 aa33.24■■■□□ 2.91
ATG4D-209ENST00000588857 FANCAO15360 1455 aa33.24■■■□□ 2.91
ATG4D-209ENST00000588857 SYCP2Q9BX26 1530 aa33.24■■■□□ 2.91
ATG4D-209ENST00000588857 KIAA1107Q9UPP5 1409 aa33.23■■■□□ 2.91
ATG4D-209ENST00000588857 MBD5Q9P267 1494 aa33.22■■■□□ 2.91
ATG4D-209ENST00000588857 RSPH4AQ5TD94 716 aa33.21■■■□□ 2.91
ATG4D-209ENST00000588857 NEO1Q92859 1461 aa33.21■■■□□ 2.91
ATG4D-209ENST00000588857 ADGBQ8N7X0 1667 aa33.21■■■□□ 2.91
ATG4D-209ENST00000588857 ABCC1P33527 1531 aa33.2■■■□□ 2.9
ATG4D-209ENST00000588857 CCDC141Q6ZP82 1450 aa33.19■■■□□ 2.9
ATG4D-209ENST00000588857 HFM1A2PYH4 1435 aa33.19■■■□□ 2.9
ATG4D-209ENST00000588857 AKNAQ7Z591 1439 aa33.19■■■□□ 2.9
ATG4D-209ENST00000588857 CFAP74Q9C0B2 1584 aa33.19■■■□□ 2.9
ATG4D-209ENST00000588857 ROCK1Q13464 1354 aa33.17■■■□□ 2.9
ATG4D-209ENST00000588857 SHANK2Q9UPX8 1470 aa33.17■■■□□ 2.9
ATG4D-209ENST00000588857 TSPY4P0CV99 314 aa33.17■■■□□ 2.9
ATG4D-209ENST00000588857 TSPY10P0CW01 314 aa33.17■■■□□ 2.9
ATG4D-209ENST00000588857 RAB3GAP2Q9H2M9 1393 aa33.16■■■□□ 2.9
ATG4D-209ENST00000588857 GCC2Q8IWJ2 1684 aa33.15■■■□□ 2.9
ATG4D-209ENST00000588857 RRP7BPQ9NSQ0 103 aa33.13■■■□□ 2.89
ATG4D-209ENST00000588857 ARHGEF12Q9NZN5 1544 aa33.12■■■□□ 2.89
ATG4D-209ENST00000588857 NAIPQ13075 1403 aa33.12■■■□□ 2.89
ATG4D-209ENST00000588857 C9orf84Q5VXU9 1444 aa33.12■■■□□ 2.89
ATG4D-209ENST00000588857 RAPGEF3O95398 923 aa33.1■■■□□ 2.89
ATG4D-209ENST00000588857 CCER1Q8TC90 406 aaPredicted RBP33.1■■■□□ 2.89
ATG4D-209ENST00000588857 ADGRL2O95490 1459 aa33.1■■■□□ 2.89
ATG4D-209ENST00000588857 AEBP2Q6ZN18 517 aaPredicted RBP33.09■■■□□ 2.89
ATG4D-209ENST00000588857 ADGRL1O94910 1474 aa33.09■■■□□ 2.89
ATG4D-209ENST00000588857 ANKRD30AQ9BXX3 1397 aa33.08■■■□□ 2.89
ATG4D-209ENST00000588857 HRCP23327 699 aa33.08■■■□□ 2.89
ATG4D-209ENST00000588857 NCOA1Q15788 1441 aa33.05■■■□□ 2.88
ATG4D-209ENST00000588857 MAST1Q9Y2H9 1570 aa33.05■■■□□ 2.88
ATG4D-209ENST00000588857 SCAPERQ9BY12 1400 aa33.03■■■□□ 2.88
ATG4D-209ENST00000588857 TRAPPC8Q9Y2L5 1435 aa33.02■■■□□ 2.88
ATG4D-209ENST00000588857 KDM4FA0A1W2PPD8 638 aa33■■■□□ 2.87
ATG4D-209ENST00000588857 DENND4BO75064 1496 aaPredicted RBP32.99■■■□□ 2.87
ATG4D-209ENST00000588857 AFAP1Q8N556 730 aa32.95■■■□□ 2.86
ATG4D-209ENST00000588857 PLXNC1O60486 1568 aa32.93■■■□□ 2.86
ATG4D-209ENST00000588857 SPAG9O60271 1321 aaKnown RBP32.93■■■□□ 2.86
ATG4D-209ENST00000588857 KIF15Q9NS87 1388 aa32.92■■■□□ 2.86
ATG4D-209ENST00000588857 ZNF518AQ6AHZ1 1483 aa32.91■■■□□ 2.86
ATG4D-209ENST00000588857 FRMPD1Q5SYB0 1578 aa32.9■■■□□ 2.86
ATG4D-209ENST00000588857 DHX57Q6P158 1386 aaKnown RBP32.9■■■□□ 2.86
ATG4D-209ENST00000588857 ACIN1Q9UKV3 1341 aaKnown RBP32.9■■■□□ 2.86
ATG4D-209ENST00000588857 RTEL1-TNFRSF6BF6WH68 1400 aa32.89■■■□□ 2.86
ATG4D-209ENST00000588857 POGZQ7Z3K3 1410 aa32.87■■■□□ 2.85
ATG4D-209ENST00000588857 ANKRD50Q9ULJ7 1429 aa32.87■■■□□ 2.85
ATG4D-209ENST00000588857 ZFYVE16Q7Z3T8 1539 aa32.86■■■□□ 2.85
ATG4D-209ENST00000588857 INO80Q9ULG1 1556 aaPredicted RBP32.85■■■□□ 2.85
ATG4D-209ENST00000588857 ATP7AQ04656 1500 aa32.84■■■□□ 2.85
ATG4D-209ENST00000588857 MYT1LQ9UL68 1186 aa32.82■■■□□ 2.84
ATG4D-209ENST00000588857 RICTORQ6R327 1708 aa32.81■■■□□ 2.84
ATG4D-209ENST00000588857 KDM5CP41229 1560 aa32.81■■■□□ 2.84
ATG4D-209ENST00000588857 ZEB1P37275 1124 aaPredicted RBP32.81■■■□□ 2.84
ATG4D-209ENST00000588857 TRIM52Q96A61 297 aa32.8■■■□□ 2.84
ATG4D-209ENST00000588857 DUOX2Q9NRD8 1548 aa32.8■■■□□ 2.84
ATG4D-209ENST00000588857 KIDINS220Q9ULH0 1771 aa32.77■■■□□ 2.84
ATG4D-209ENST00000588857 ZMYM4Q5VZL5 1548 aa32.76■■■□□ 2.83
ATG4D-209ENST00000588857 CLSPNQ9HAW4 1339 aa32.76■■■□□ 2.83
ATG4D-209ENST00000588857 MAGI2Q86UL8 1455 aa32.76■■■□□ 2.83
ATG4D-209ENST00000588857 HECW2Q9P2P5 1572 aa32.75■■■□□ 2.83
ATG4D-209ENST00000588857 MLH3Q9UHC1 1453 aa32.73■■■□□ 2.83
ATG4D-209ENST00000588857 ERBINQ96RT1 1412 aa32.71■■■□□ 2.83
ATG4D-209ENST00000588857 YEATS2Q9ULM3 1422 aa32.7■■■□□ 2.83
ATG4D-209ENST00000588857 ARHGEF40Q8TER5 1519 aa32.68■■■□□ 2.82
ATG4D-209ENST00000588857 ARID4BQ4LE39 1312 aaPredicted RBP32.67■■■□□ 2.82
ATG4D-209ENST00000588857 MPHOSPH9Q99550 1183 aa32.62■■■□□ 2.81
ATG4D-209ENST00000588857 UNC13BO14795 1591 aa32.6■■■□□ 2.81
ATG4D-209ENST00000588857 ABCA6Q8N139 1617 aa32.6■■■□□ 2.81
ATG4D-209ENST00000588857 NUP155O75694 1391 aa32.59■■■□□ 2.81
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms