RNA–Protein interactions for RNA: ENST00000577664.5

CDK5RAP3-204, Transcript of CDK5 regulatory subunit associated protein 3, humanhuman

TSL 4

Gene CDK5RAP3, Length 568 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDK5RAP3-204ENST00000577664 RICTORQ6R327 1708 aa17.71■□□□□ 0.43
CDK5RAP3-204ENST00000577664 FHOD3Q2V2M9 1422 aa17.71■□□□□ 0.43
CDK5RAP3-204ENST00000577664 AKNAQ7Z591 1439 aa17.71■□□□□ 0.43
CDK5RAP3-204ENST00000577664 ZMYM4Q5VZL5 1548 aa17.68■□□□□ 0.42
CDK5RAP3-204ENST00000577664 DENND4BO75064 1496 aaPredicted RBP17.68■□□□□ 0.42
CDK5RAP3-204ENST00000577664 ATP10BO94823 1461 aa17.67■□□□□ 0.42
CDK5RAP3-204ENST00000577664 ARHGEF12Q9NZN5 1544 aa17.67■□□□□ 0.42
CDK5RAP3-204ENST00000577664 SETD1BQ9UPS6 1966 aaKnown RBP17.66■□□□□ 0.42
CDK5RAP3-204ENST00000577664 VPS8Q8N3P4 1428 aa17.65■□□□□ 0.42
CDK5RAP3-204ENST00000577664 MED1Q15648 1581 aaPredicted RBP17.65■□□□□ 0.42
CDK5RAP3-204ENST00000577664 UHRF1BP1Q6BDS2 1440 aa17.64■□□□□ 0.42
CDK5RAP3-204ENST00000577664 MAGI2Q86UL8 1455 aa17.63■□□□□ 0.41
CDK5RAP3-204ENST00000577664 CASKIN1Q8WXD9 1431 aa17.63■□□□□ 0.41
CDK5RAP3-204ENST00000577664 ZFYVE16Q7Z3T8 1539 aa17.62■□□□□ 0.41
CDK5RAP3-204ENST00000577664 FYCO1Q9BQS8 1478 aa17.57■□□□□ 0.4
CDK5RAP3-204ENST00000577664 CEBPAP49715 358 aaPredicted RBP17.57■□□□□ 0.4
CDK5RAP3-204ENST00000577664 MLECQ14165 292 aa17.57■□□□□ 0.4
CDK5RAP3-204ENST00000577664 UBAP1LF5GYI3 381 aa17.56■□□□□ 0.4
CDK5RAP3-204ENST00000577664 RAPGEF6Q8TEU7 1601 aa17.56■□□□□ 0.4
CDK5RAP3-204ENST00000577664 NUP153P49790 1475 aaKnown RBP17.54■□□□□ 0.4
CDK5RAP3-204ENST00000577664 NCOA1Q15788 1441 aa17.54■□□□□ 0.4
CDK5RAP3-204ENST00000577664 CFAP74Q9C0B2 1584 aa17.53■□□□□ 0.4
CDK5RAP3-204ENST00000577664 MAP3K1Q13233 1512 aa17.53■□□□□ 0.4
CDK5RAP3-204ENST00000577664 HECW1Q76N89 1606 aa17.51■□□□□ 0.39
CDK5RAP3-204ENST00000577664 ATP10AO60312 1499 aa17.5■□□□□ 0.39
CDK5RAP3-204ENST00000577664 C9orf84Q5VXU9 1444 aa17.48■□□□□ 0.39
CDK5RAP3-204ENST00000577664 ARID3CA6NKF2 412 aa17.48■□□□□ 0.39
CDK5RAP3-204ENST00000577664 CCDC18Q5T9S5 1454 aa17.48■□□□□ 0.39
CDK5RAP3-204ENST00000577664 HSPA1LP34931 641 aa17.46■□□□□ 0.39
CDK5RAP3-204ENST00000577664 ZNF335Q9H4Z2 1342 aaPredicted RBP17.44■□□□□ 0.38
CDK5RAP3-204ENST00000577664 LRRIQ1Q96JM4 1722 aa17.44■□□□□ 0.38
CDK5RAP3-204ENST00000577664 TRAPPC8Q9Y2L5 1435 aa17.43■□□□□ 0.38
CDK5RAP3-204ENST00000577664 C3P01024 1663 aa17.42■□□□□ 0.38
CDK5RAP3-204ENST00000577664 ATP1B4Q9UN42 357 aaPredicted RBP17.42■□□□□ 0.38
CDK5RAP3-204ENST00000577664 CDK11AQ9UQ88 783 aaPredicted RBP17.42■□□□□ 0.38
CDK5RAP3-204ENST00000577664 TIAM1Q13009 1591 aa17.4■□□□□ 0.38
CDK5RAP3-204ENST00000577664 APLP2Q06481 763 aa17.4■□□□□ 0.38
CDK5RAP3-204ENST00000577664 PHF23Q9BUL5 403 aaPredicted RBP17.4■□□□□ 0.38
CDK5RAP3-204ENST00000577664 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP17.4■□□□□ 0.38
CDK5RAP3-204ENST00000577664 PLEKHD1A6NEE1 506 aa17.39■□□□□ 0.37
CDK5RAP3-204ENST00000577664 CDK13Q14004 1512 aaKnown RBP17.38■□□□□ 0.37
CDK5RAP3-204ENST00000577664 CAMSAP1Q5T5Y3 1602 aa17.38■□□□□ 0.37
CDK5RAP3-204ENST00000577664 SCAPERQ9BY12 1400 aa17.37■□□□□ 0.37
CDK5RAP3-204ENST00000577664 LRRC9Q6ZRR7 1453 aa17.36■□□□□ 0.37
CDK5RAP3-204ENST00000577664 KANK4Q5T7N3 995 aaPredicted RBP17.35■□□□□ 0.37
CDK5RAP3-204ENST00000577664 REREQ9P2R6 1566 aa17.35■□□□□ 0.37
CDK5RAP3-204ENST00000577664 TROQ12816 1431 aaPredicted RBP17.34■□□□□ 0.37
CDK5RAP3-204ENST00000577664 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.33■□□□□ 0.36
CDK5RAP3-204ENST00000577664 HNRNPUL2Q1KMD3 747 aaKnown RBP17.33■□□□□ 0.36
CDK5RAP3-204ENST00000577664 PLA2R1Q13018 1463 aa17.32■□□□□ 0.36
CDK5RAP3-204ENST00000577664 AGLP35573 1532 aa17.31■□□□□ 0.36
CDK5RAP3-204ENST00000577664 TOM1O60784 492 aa17.31■□□□□ 0.36
CDK5RAP3-204ENST00000577664 MTUS2Q5JR59 1369 aa17.3■□□□□ 0.36
CDK5RAP3-204ENST00000577664 PKD2Q13563 968 aa17.3■□□□□ 0.36
CDK5RAP3-204ENST00000577664 TCOF1Q13428 1488 aaKnown RBP17.3■□□□□ 0.36
CDK5RAP3-204ENST00000577664 PLCH2O75038 1416 aa17.3■□□□□ 0.36
CDK5RAP3-204ENST00000577664 NPATQ14207 1427 aa17.3■□□□□ 0.36
CDK5RAP3-204ENST00000577664 NCKAP5LQ9HCH0 1330 aa17.29■□□□□ 0.36
CDK5RAP3-204ENST00000577664 EHBP1L1Q8N3D4 1523 aa17.29■□□□□ 0.36
CDK5RAP3-204ENST00000577664 RGS17Q9UGC6 210 aaPredicted RBP17.28■□□□□ 0.36
CDK5RAP3-204ENST00000577664 KDM5CP41229 1560 aa17.28■□□□□ 0.36
CDK5RAP3-204ENST00000577664 PIP4K2BP78356 416 aa17.27■□□□□ 0.36
CDK5RAP3-204ENST00000577664 CNTLNQ9NXG0 1405 aa17.27■□□□□ 0.35
CDK5RAP3-204ENST00000577664 SCAF1Q9H7N4 1312 aaKnown RBP17.26■□□□□ 0.35
CDK5RAP3-204ENST00000577664 ZNF518AQ6AHZ1 1483 aa17.25■□□□□ 0.35
CDK5RAP3-204ENST00000577664 DIP2CQ9Y2E4 1556 aa17.25■□□□□ 0.35
CDK5RAP3-204ENST00000577664 CPS1P31327 1500 aa17.24■□□□□ 0.35
CDK5RAP3-204ENST00000577664 ZNF142P52746 1687 aaPredicted RBP17.23■□□□□ 0.35
CDK5RAP3-204ENST00000577664 ALKQ9UM73 1620 aa17.23■□□□□ 0.35
CDK5RAP3-204ENST00000577664 NCOA2Q15596 1464 aa17.21■□□□□ 0.35
CDK5RAP3-204ENST00000577664 SUPT6HQ7KZ85 1726 aaKnown RBP17.21■□□□□ 0.35
CDK5RAP3-204ENST00000577664 PTPRKQ15262 1439 aa17.21■□□□□ 0.34
CDK5RAP3-204ENST00000577664 MROH2AA6NES4 1674 aa17.2■□□□□ 0.34
CDK5RAP3-204ENST00000577664 ESF1Q9H501 851 aaKnown RBP17.2■□□□□ 0.34
CDK5RAP3-204ENST00000577664 PPP6R1Q9UPN7 881 aa17.2■□□□□ 0.34
CDK5RAP3-204ENST00000577664 KIF14Q15058 1648 aa17.2■□□□□ 0.34
CDK5RAP3-204ENST00000577664 MLH3Q9UHC1 1453 aa17.18■□□□□ 0.34
CDK5RAP3-204ENST00000577664 EFCAB2Q5VUJ9 269 aa17.17■□□□□ 0.34
CDK5RAP3-204ENST00000577664 ABCA6Q8N139 1617 aa17.17■□□□□ 0.34
CDK5RAP3-204ENST00000577664 GPATCH8Q9UKJ3 1502 aaKnown RBP17.16■□□□□ 0.34
CDK5RAP3-204ENST00000577664 CEP170BQ9Y4F5 1589 aaPredicted RBP17.15■□□□□ 0.34
CDK5RAP3-204ENST00000577664 AFAP1Q8N556 730 aa17.15■□□□□ 0.34
CDK5RAP3-204ENST00000577664 SHANK2Q9UPX8 1470 aa17.15■□□□□ 0.34
CDK5RAP3-204ENST00000577664 MYO3AQ8NEV4 1616 aa17.14■□□□□ 0.33
CDK5RAP3-204ENST00000577664 MIA2Q96PC5 1412 aa17.14■□□□□ 0.33
CDK5RAP3-204ENST00000577664 PPARGC1BQ86YN6 1023 aaKnown RBP17.14■□□□□ 0.33
CDK5RAP3-204ENST00000577664 ZMYM3Q14202 1370 aa17.14■□□□□ 0.33
CDK5RAP3-204ENST00000577664 CCNB3Q8WWL7 1395 aa17.14■□□□□ 0.33
CDK5RAP3-204ENST00000577664 MYOM3Q5VTT5 1437 aa17.13■□□□□ 0.33
CDK5RAP3-204ENST00000577664 MYO5CQ9NQX4 1742 aa17.12■□□□□ 0.33
CDK5RAP3-204ENST00000577664 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP17.11■□□□□ 0.33
CDK5RAP3-204ENST00000577664 POTEAQ6S8J7 498 aa17.1■□□□□ 0.33
CDK5RAP3-204ENST00000577664 RRBP1Q9P2E9 1410 aaKnown RBP17.09■□□□□ 0.33
CDK5RAP3-204ENST00000577664 CDC42BPAQ5VT25 1732 aa17.09■□□□□ 0.33
CDK5RAP3-204ENST00000577664 CFDP1Q9UEE9 299 aaPredicted RBP17.08■□□□□ 0.32
CDK5RAP3-204ENST00000577664 PREX2Q70Z35 1606 aa17.07■□□□□ 0.32
CDK5RAP3-204ENST00000577664 FGD6Q6ZV73 1430 aa17.07■□□□□ 0.32
CDK5RAP3-204ENST00000577664 CDC42BPBQ9Y5S2 1711 aa17.07■□□□□ 0.32
CDK5RAP3-204ENST00000577664 ITSN2Q9NZM3 1697 aa17.07■□□□□ 0.32
CDK5RAP3-204ENST00000577664 NEURL4Q96JN8 1562 aa17.06■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 62.4 ms