RNA–Protein interactions for RNA: ENST00000573994.1

RPA1-206, Transcript of replication protein A1, humanhuman

TSL 2

Gene RPA1, Length 844 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPA1-206ENST00000573994 PCF11O94913 1555 aaKnown RBP16.26■□□□□ 0.19
RPA1-206ENST00000573994 ARAP3Q8WWN8 1544 aa16.26■□□□□ 0.19
RPA1-206ENST00000573994 ADGRL1O94910 1474 aa16.26■□□□□ 0.19
RPA1-206ENST00000573994 NEO1Q92859 1461 aa16.26■□□□□ 0.19
RPA1-206ENST00000573994 CLIP1P30622 1438 aa16.25■□□□□ 0.19
RPA1-206ENST00000573994 CAPN15O75808 1086 aa16.22■□□□□ 0.19
RPA1-206ENST00000573994 RAPGEF3O95398 923 aa16.22■□□□□ 0.19
RPA1-206ENST00000573994 PHLDB1Q86UU1 1377 aa16.22■□□□□ 0.19
RPA1-206ENST00000573994 CASKIN1Q8WXD9 1431 aa16.21■□□□□ 0.19
RPA1-206ENST00000573994 FANCAO15360 1455 aa16.21■□□□□ 0.19
RPA1-206ENST00000573994 FRMPD1Q5SYB0 1578 aa16.21■□□□□ 0.18
RPA1-206ENST00000573994 TROQ12816 1431 aaPredicted RBP16.19■□□□□ 0.18
RPA1-206ENST00000573994 KIF14Q15058 1648 aa16.19■□□□□ 0.18
RPA1-206ENST00000573994 LRRIQ1Q96JM4 1722 aa16.19■□□□□ 0.18
RPA1-206ENST00000573994 AKNAQ7Z591 1439 aa16.19■□□□□ 0.18
RPA1-206ENST00000573994 CDK11AQ9UQ88 783 aaPredicted RBP16.18■□□□□ 0.18
RPA1-206ENST00000573994 CFAP74Q9C0B2 1584 aa16.17■□□□□ 0.18
RPA1-206ENST00000573994 FYCO1Q9BQS8 1478 aa16.17■□□□□ 0.18
RPA1-206ENST00000573994 SLC4A1APQ9BWU0 796 aaKnown RBP16.17■□□□□ 0.18
RPA1-206ENST00000573994 DENND4BO75064 1496 aaPredicted RBP16.16■□□□□ 0.18
RPA1-206ENST00000573994 CCDC18Q5T9S5 1454 aa16.16■□□□□ 0.18
RPA1-206ENST00000573994 PLCH2O75038 1416 aa16.15■□□□□ 0.18
RPA1-206ENST00000573994 SAMD1Q6SPF0 538 aaPredicted RBP16.15■□□□□ 0.18
RPA1-206ENST00000573994 CEP162Q5TB80 1403 aa16.14■□□□□ 0.17
RPA1-206ENST00000573994 ARHGEF40Q8TER5 1519 aa16.13■□□□□ 0.17
RPA1-206ENST00000573994 RICTORQ6R327 1708 aa16.11■□□□□ 0.17
RPA1-206ENST00000573994 SPINK5Q9NQ38 1064 aaPredicted RBP16.11■□□□□ 0.17
RPA1-206ENST00000573994 MYO5CQ9NQX4 1742 aa16.11■□□□□ 0.17
RPA1-206ENST00000573994 POGZQ7Z3K3 1410 aa16.11■□□□□ 0.17
RPA1-206ENST00000573994 ARHGAP5Q13017 1502 aa16.1■□□□□ 0.17
RPA1-206ENST00000573994 SCAPERQ9BY12 1400 aa16.1■□□□□ 0.17
RPA1-206ENST00000573994 ZMYM4Q5VZL5 1548 aa16.08■□□□□ 0.16
RPA1-206ENST00000573994 EFCAB2Q5VUJ9 269 aa16.07■□□□□ 0.16
RPA1-206ENST00000573994 YEATS2Q9ULM3 1422 aa16.07■□□□□ 0.16
RPA1-206ENST00000573994 ZFYVE16Q7Z3T8 1539 aa16.07■□□□□ 0.16
RPA1-206ENST00000573994 LOC105371045A0A1W2PR82 267 aa16.06■□□□□ 0.16
RPA1-206ENST00000573994 ZNF219Q9P2Y4 722 aaPredicted RBP16.06■□□□□ 0.16
RPA1-206ENST00000573994 ARID4BQ4LE39 1312 aaPredicted RBP16.05■□□□□ 0.16
RPA1-206ENST00000573994 MYCNP04198 464 aaPredicted RBP16.04■□□□□ 0.16
RPA1-206ENST00000573994 PREX2Q70Z35 1606 aa16.04■□□□□ 0.16
RPA1-206ENST00000573994 MAGI2Q86UL8 1455 aa16.01■□□□□ 0.15
RPA1-206ENST00000573994 MTUS2Q5JR59 1369 aa16■□□□□ 0.15
RPA1-206ENST00000573994 ABCC1P33527 1531 aa16■□□□□ 0.15
RPA1-206ENST00000573994 CDC42BPBQ9Y5S2 1711 aa16■□□□□ 0.15
RPA1-206ENST00000573994 ZNF518AQ6AHZ1 1483 aa16■□□□□ 0.15
RPA1-206ENST00000573994 DSG3P32926 999 aa16■□□□□ 0.15
RPA1-206ENST00000573994 BCORL1Q5H9F3 1711 aa15.99■□□□□ 0.15
RPA1-206ENST00000573994 ADAMTSL3P82987 1691 aa15.99■□□□□ 0.15
RPA1-206ENST00000573994 SIGLEC1Q9BZZ2 1709 aa15.99■□□□□ 0.15
RPA1-206ENST00000573994 ARHGEF12Q9NZN5 1544 aa15.99■□□□□ 0.15
RPA1-206ENST00000573994 MADDQ8WXG6 1647 aa15.98■□□□□ 0.15
RPA1-206ENST00000573994 KDM5CP41229 1560 aa15.98■□□□□ 0.15
RPA1-206ENST00000573994 AFAP1Q8N556 730 aa15.98■□□□□ 0.15
RPA1-206ENST00000573994 CDC42BPAQ5VT25 1732 aa15.97■□□□□ 0.15
RPA1-206ENST00000573994 TRAPPC8Q9Y2L5 1435 aa15.97■□□□□ 0.15
RPA1-206ENST00000573994 GPATCH8Q9UKJ3 1502 aaKnown RBP15.97■□□□□ 0.15
RPA1-206ENST00000573994 PTPRMP28827 1452 aa15.97■□□□□ 0.15
RPA1-206ENST00000573994 EHBP1L1Q8N3D4 1523 aa15.96■□□□□ 0.15
RPA1-206ENST00000573994 ZNF777Q9ULD5 760 aaPredicted RBP15.96■□□□□ 0.15
RPA1-206ENST00000573994 HECW2Q9P2P5 1572 aa15.96■□□□□ 0.14
RPA1-206ENST00000573994 C9orf84Q5VXU9 1444 aa15.95■□□□□ 0.14
RPA1-206ENST00000573994 MYT1LQ9UL68 1186 aa15.95■□□□□ 0.14
RPA1-206ENST00000573994 CCNB3Q8WWL7 1395 aa15.95■□□□□ 0.14
RPA1-206ENST00000573994 ITSN2Q9NZM3 1697 aa15.95■□□□□ 0.14
RPA1-206ENST00000573994 MLECQ14165 292 aa15.94■□□□□ 0.14
RPA1-206ENST00000573994 ATP10AO60312 1499 aa15.94■□□□□ 0.14
RPA1-206ENST00000573994 SAMD9LQ8IVG5 1584 aa15.94■□□□□ 0.14
RPA1-206ENST00000573994 SYCP2Q9BX26 1530 aa15.94■□□□□ 0.14
RPA1-206ENST00000573994 VPS8Q8N3P4 1428 aa15.94■□□□□ 0.14
RPA1-206ENST00000573994 TIAM1Q13009 1591 aa15.92■□□□□ 0.14
RPA1-206ENST00000573994 DIP2CQ9Y2E4 1556 aa15.92■□□□□ 0.14
RPA1-206ENST00000573994 FOXD4L1Q9NU39 408 aa15.92■□□□□ 0.14
RPA1-206ENST00000573994 RIMS1Q86UR5 1692 aaKnown RBP15.92■□□□□ 0.14
RPA1-206ENST00000573994 ABCA6Q8N139 1617 aa15.91■□□□□ 0.14
RPA1-206ENST00000573994 CFDP1Q9UEE9 299 aaPredicted RBP15.9■□□□□ 0.14
RPA1-206ENST00000573994 MLH3Q9UHC1 1453 aa15.9■□□□□ 0.14
RPA1-206ENST00000573994 HNRNPMP52272 730 aaKnown RBP eCLIP15.87■□□□□ 0.13
RPA1-206ENST00000573994 NCOA2Q15596 1464 aa15.86■□□□□ 0.13
RPA1-206ENST00000573994 PLEKHH2Q8IVE3 1493 aa15.85■□□□□ 0.13
RPA1-206ENST00000573994 ZNF644Q9H582 1327 aaPredicted RBP15.85■□□□□ 0.13
RPA1-206ENST00000573994 FER1L4A9Z1Z3 1794 aa15.85■□□□□ 0.13
RPA1-206ENST00000573994 KIAA1107Q9UPP5 1409 aa15.85■□□□□ 0.13
RPA1-206ENST00000573994 REREQ9P2R6 1566 aa15.84■□□□□ 0.13
RPA1-206ENST00000573994 SPAG9O60271 1321 aaKnown RBP15.84■□□□□ 0.13
RPA1-206ENST00000573994 KIDINS220Q9ULH0 1771 aa15.84■□□□□ 0.13
RPA1-206ENST00000573994 SUPT6HQ7KZ85 1726 aaKnown RBP15.83■□□□□ 0.13
RPA1-206ENST00000573994 LRRC9Q6ZRR7 1453 aa15.83■□□□□ 0.12
RPA1-206ENST00000573994 ATP7AQ04656 1500 aa15.82■□□□□ 0.12
RPA1-206ENST00000573994 INO80Q9ULG1 1556 aaPredicted RBP15.81■□□□□ 0.12
RPA1-206ENST00000573994 AGLP35573 1532 aa15.79■□□□□ 0.12
RPA1-206ENST00000573994 CAMSAP2Q08AD1 1489 aa15.79■□□□□ 0.12
RPA1-206ENST00000573994 LMTK3Q96Q04 1460 aa15.79■□□□□ 0.12
RPA1-206ENST00000573994 MBD5Q9P267 1494 aa15.79■□□□□ 0.12
RPA1-206ENST00000573994 KANK4Q5T7N3 995 aaPredicted RBP15.79■□□□□ 0.12
RPA1-206ENST00000573994 CEBPAP49715 358 aaPredicted RBP15.77■□□□□ 0.12
RPA1-206ENST00000573994 ABCB7O75027 752 aa15.76■□□□□ 0.11
RPA1-206ENST00000573994 MAP3K1Q13233 1512 aa15.76■□□□□ 0.11
RPA1-206ENST00000573994 PLXNC1O60486 1568 aa15.75■□□□□ 0.11
RPA1-206ENST00000573994 A2MP01023 1474 aa15.75■□□□□ 0.11
RPA1-206ENST00000573994 CCDC141Q6ZP82 1450 aa15.75■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 128.6 ms