RNA–Protein interactions for RNA: ENST00000573474.5

CCDC40-209, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 554 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-209ENST00000573474 CAMSAP2Q08AD1 1489 aa20.58■□□□□ 0.89
CCDC40-209ENST00000573474 ABCA9Q8IUA7 1624 aa20.57■□□□□ 0.88
CCDC40-209ENST00000573474 MYO5CQ9NQX4 1742 aa20.57■□□□□ 0.88
CCDC40-209ENST00000573474 DNAJC5Q9H3Z4 198 aa20.56■□□□□ 0.88
CCDC40-209ENST00000573474 CDC42BPBQ9Y5S2 1711 aa20.56■□□□□ 0.88
CCDC40-209ENST00000573474 ARHGAP5Q13017 1502 aa20.55■□□□□ 0.88
CCDC40-209ENST00000573474 EFCAB2Q5VUJ9 269 aa20.55■□□□□ 0.88
CCDC40-209ENST00000573474 ARAP3Q8WWN8 1544 aa20.54■□□□□ 0.88
CCDC40-209ENST00000573474 PTPRKQ15262 1439 aa20.52■□□□□ 0.87
CCDC40-209ENST00000573474 ABCC5O15440 1437 aa20.51■□□□□ 0.87
CCDC40-209ENST00000573474 DAPK1P53355 1430 aa20.51■□□□□ 0.87
CCDC40-209ENST00000573474 PLEKHH2Q8IVE3 1493 aa20.5■□□□□ 0.87
CCDC40-209ENST00000573474 DNMT1P26358 1616 aaKnown RBP20.49■□□□□ 0.87
CCDC40-209ENST00000573474 RSPH4AQ5TD94 716 aa20.49■□□□□ 0.87
CCDC40-209ENST00000573474 SAMD9LQ8IVG5 1584 aa20.49■□□□□ 0.87
CCDC40-209ENST00000573474 CD109Q6YHK3 1445 aa20.48■□□□□ 0.87
CCDC40-209ENST00000573474 KIAA1107Q9UPP5 1409 aa20.48■□□□□ 0.87
CCDC40-209ENST00000573474 HNRNPMP52272 730 aaKnown RBP eCLIP20.47■□□□□ 0.87
CCDC40-209ENST00000573474 GLI2P10070 1586 aa20.46■□□□□ 0.87
CCDC40-209ENST00000573474 SETD5Q9C0A6 1442 aa20.45■□□□□ 0.86
CCDC40-209ENST00000573474 MBD5Q9P267 1494 aa20.45■□□□□ 0.86
CCDC40-209ENST00000573474 CHIC2Q9UKJ5 165 aa20.45■□□□□ 0.86
CCDC40-209ENST00000573474 ARHGEF5Q12774 1597 aa20.45■□□□□ 0.86
CCDC40-209ENST00000573474 AKNAQ7Z591 1439 aa20.44■□□□□ 0.86
CCDC40-209ENST00000573474 FANCAO15360 1455 aa20.43■□□□□ 0.86
CCDC40-209ENST00000573474 FAM69CQ0P6D2 419 aa20.43■□□□□ 0.86
CCDC40-209ENST00000573474 ROCK1Q13464 1354 aa20.43■□□□□ 0.86
CCDC40-209ENST00000573474 TSPY4P0CV99 314 aa20.42■□□□□ 0.86
CCDC40-209ENST00000573474 TSPY10P0CW01 314 aa20.42■□□□□ 0.86
CCDC40-209ENST00000573474 HFM1A2PYH4 1435 aa20.42■□□□□ 0.86
CCDC40-209ENST00000573474 HRCP23327 699 aa20.41■□□□□ 0.86
CCDC40-209ENST00000573474 CCDC141Q6ZP82 1450 aa20.41■□□□□ 0.86
CCDC40-209ENST00000573474 SYCP2Q9BX26 1530 aa20.41■□□□□ 0.86
CCDC40-209ENST00000573474 DIP2BQ9P265 1576 aa20.41■□□□□ 0.86
CCDC40-209ENST00000573474 SHANK2Q9UPX8 1470 aa20.4■□□□□ 0.86
CCDC40-209ENST00000573474 ABCC1P33527 1531 aa20.39■□□□□ 0.85
CCDC40-209ENST00000573474 RAB3GAP2Q9H2M9 1393 aa20.39■□□□□ 0.85
CCDC40-209ENST00000573474 RRP7BPQ9NSQ0 103 aa20.39■□□□□ 0.85
CCDC40-209ENST00000573474 MAP3K4Q9Y6R4 1608 aa20.38■□□□□ 0.85
CCDC40-209ENST00000573474 ARHGEF12Q9NZN5 1544 aa20.38■□□□□ 0.85
CCDC40-209ENST00000573474 NAIPQ13075 1403 aa20.38■□□□□ 0.85
CCDC40-209ENST00000573474 CROCC2H7BZ55 1655 aa20.38■□□□□ 0.85
CCDC40-209ENST00000573474 CFAP74Q9C0B2 1584 aa20.37■□□□□ 0.85
CCDC40-209ENST00000573474 ADGRL2O95490 1459 aa20.37■□□□□ 0.85
CCDC40-209ENST00000573474 C9orf84Q5VXU9 1444 aa20.36■□□□□ 0.85
CCDC40-209ENST00000573474 ANKRD30AQ9BXX3 1397 aa20.36■□□□□ 0.85
CCDC40-209ENST00000573474 ADGRL1O94910 1474 aa20.35■□□□□ 0.85
CCDC40-209ENST00000573474 NEO1Q92859 1461 aa20.35■□□□□ 0.85
CCDC40-209ENST00000573474 NCOA1Q15788 1441 aa20.35■□□□□ 0.85
CCDC40-209ENST00000573474 SCAPERQ9BY12 1400 aa20.34■□□□□ 0.85
CCDC40-209ENST00000573474 ADGBQ8N7X0 1667 aa20.33■□□□□ 0.85
CCDC40-209ENST00000573474 CCER1Q8TC90 406 aaPredicted RBP20.33■□□□□ 0.85
CCDC40-209ENST00000573474 TRAPPC8Q9Y2L5 1435 aa20.33■□□□□ 0.84
CCDC40-209ENST00000573474 MAST1Q9Y2H9 1570 aa20.31■□□□□ 0.84
CCDC40-209ENST00000573474 GCC2Q8IWJ2 1684 aa20.31■□□□□ 0.84
CCDC40-209ENST00000573474 ACIN1Q9UKV3 1341 aaKnown RBP20.29■□□□□ 0.84
CCDC40-209ENST00000573474 AFAP1Q8N556 730 aa20.29■□□□□ 0.84
CCDC40-209ENST00000573474 SPAG9O60271 1321 aaKnown RBP20.27■□□□□ 0.84
CCDC40-209ENST00000573474 TEX14Q8IWB6 1497 aa20.27■□□□□ 0.84
CCDC40-209ENST00000573474 RTEL1-TNFRSF6BF6WH68 1400 aa20.27■□□□□ 0.83
CCDC40-209ENST00000573474 KIF13AQ9H1H9 1805 aa20.25■□□□□ 0.83
CCDC40-209ENST00000573474 KIF15Q9NS87 1388 aa20.25■□□□□ 0.83
CCDC40-209ENST00000573474 ZNF518AQ6AHZ1 1483 aa20.24■□□□□ 0.83
CCDC40-209ENST00000573474 DHX57Q6P158 1386 aaKnown RBP20.23■□□□□ 0.83
CCDC40-209ENST00000573474 POGZQ7Z3K3 1410 aa20.23■□□□□ 0.83
CCDC40-209ENST00000573474 DENND4BO75064 1496 aaPredicted RBP20.23■□□□□ 0.83
CCDC40-209ENST00000573474 PPRC1Q5VV67 1664 aaKnown RBP20.22■□□□□ 0.83
CCDC40-209ENST00000573474 PLXNC1O60486 1568 aa20.21■□□□□ 0.83
CCDC40-209ENST00000573474 ANKRD50Q9ULJ7 1429 aa20.21■□□□□ 0.83
CCDC40-209ENST00000573474 KDM6BO15054 1643 aa20.2■□□□□ 0.82
CCDC40-209ENST00000573474 TSPOAP1O95153 1857 aa20.2■□□□□ 0.82
CCDC40-209ENST00000573474 ZEB1P37275 1124 aaPredicted RBP20.19■□□□□ 0.82
CCDC40-209ENST00000573474 ZFYVE16Q7Z3T8 1539 aa20.18■□□□□ 0.82
CCDC40-209ENST00000573474 TRIM52Q96A61 297 aa20.18■□□□□ 0.82
CCDC40-209ENST00000573474 MYT1LQ9UL68 1186 aa20.18■□□□□ 0.82
CCDC40-209ENST00000573474 ATP7AQ04656 1500 aa20.17■□□□□ 0.82
CCDC40-209ENST00000573474 KDM5CP41229 1560 aa20.17■□□□□ 0.82
CCDC40-209ENST00000573474 CLSPNQ9HAW4 1339 aa20.17■□□□□ 0.82
CCDC40-209ENST00000573474 DUOX2Q9NRD8 1548 aa20.17■□□□□ 0.82
CCDC40-209ENST00000573474 INO80Q9ULG1 1556 aaPredicted RBP20.17■□□□□ 0.82
CCDC40-209ENST00000573474 RAPGEF3O95398 923 aa20.16■□□□□ 0.82
CCDC40-209ENST00000573474 MLH3Q9UHC1 1453 aa20.16■□□□□ 0.82
CCDC40-209ENST00000573474 TRHP20396 242 aaPredicted RBP20.14■□□□□ 0.81
CCDC40-209ENST00000573474 ERBINQ96RT1 1412 aa20.12■□□□□ 0.81
CCDC40-209ENST00000573474 RICTORQ6R327 1708 aa20.11■□□□□ 0.81
CCDC40-209ENST00000573474 KIDINS220Q9ULH0 1771 aa20.11■□□□□ 0.81
CCDC40-209ENST00000573474 HECW2Q9P2P5 1572 aa20.1■□□□□ 0.81
CCDC40-209ENST00000573474 DHX29Q7Z478 1369 aaKnown RBP20.09■□□□□ 0.81
CCDC40-209ENST00000573474 MPHOSPH9Q99550 1183 aa20.08■□□□□ 0.81
CCDC40-209ENST00000573474 FRMPD1Q5SYB0 1578 aa20.07■□□□□ 0.8
CCDC40-209ENST00000573474 ZMYM4Q5VZL5 1548 aa20.06■□□□□ 0.8
CCDC40-209ENST00000573474 NUP155O75694 1391 aa20.06■□□□□ 0.8
CCDC40-209ENST00000573474 MAGI2Q86UL8 1455 aa20.05■□□□□ 0.8
CCDC40-209ENST00000573474 SLC4A1APQ9BWU0 796 aaKnown RBP20.04■□□□□ 0.8
CCDC40-209ENST00000573474 A2MP01023 1474 aa20.04■□□□□ 0.8
CCDC40-209ENST00000573474 KDM5DQ9BY66 1539 aa20.03■□□□□ 0.8
CCDC40-209ENST00000573474 PZPP20742 1482 aa20.03■□□□□ 0.8
CCDC40-209ENST00000573474 COL17A1Q9UMD9 1497 aaPredicted RBP20.03■□□□□ 0.8
CCDC40-209ENST00000573474 UNC13BO14795 1591 aa20.01■□□□□ 0.79
CCDC40-209ENST00000573474 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms