RNA–Protein interactions for RNA: ENST00000566078.1

CTCF-203, Transcript of CCCTC-binding factor, humanhuman

TSL 2

Gene CTCF, Length 1,627 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-203ENST00000566078 ITGAEP38570 1179 aa46.25■■■■■ 4.99
CTCF-203ENST00000566078 ARHGAP5Q13017 1502 aa46.21■■■■■ 4.99
CTCF-203ENST00000566078 DNMT1P26358 1616 aaKnown RBP46.17■■■■■ 4.98
CTCF-203ENST00000566078 SAMD9LQ8IVG5 1584 aa46.16■■■■■ 4.98
CTCF-203ENST00000566078 ZNF644Q9H582 1327 aaPredicted RBP46.15■■■■■ 4.98
CTCF-203ENST00000566078 ZNF777Q9ULD5 760 aaPredicted RBP46.14■■■■■ 4.98
CTCF-203ENST00000566078 PLCH2O75038 1416 aa46.13■■■■■ 4.98
CTCF-203ENST00000566078 ARAP3Q8WWN8 1544 aa46.12■■■■■ 4.97
CTCF-203ENST00000566078 CROCC2H7BZ55 1655 aa46.08■■■■■ 4.97
CTCF-203ENST00000566078 PTPRKQ15262 1439 aa46.03■■■■■ 4.96
CTCF-203ENST00000566078 DAPK1P53355 1430 aa46.02■■■■■ 4.96
CTCF-203ENST00000566078 DIP2BQ9P265 1576 aa46.01■■■■■ 4.96
CTCF-203ENST00000566078 GLI2P10070 1586 aa45.99■■■■■ 4.95
CTCF-203ENST00000566078 DNAJC5Q9H3Z4 198 aa45.98■■■■■ 4.95
CTCF-203ENST00000566078 MAP3K4Q9Y6R4 1608 aa45.97■■■■■ 4.95
CTCF-203ENST00000566078 ARHGEF5Q12774 1597 aa45.97■■■■■ 4.95
CTCF-203ENST00000566078 ABCC5O15440 1437 aa45.95■■■■■ 4.95
CTCF-203ENST00000566078 SYCP2Q9BX26 1530 aa45.95■■■■■ 4.95
CTCF-203ENST00000566078 ADGBQ8N7X0 1667 aa45.94■■■■■ 4.94
CTCF-203ENST00000566078 PLEKHH2Q8IVE3 1493 aa45.93■■■■■ 4.94
CTCF-203ENST00000566078 EFCAB2Q5VUJ9 269 aa45.92■■■■■ 4.94
CTCF-203ENST00000566078 ABCC1P33527 1531 aa45.91■■■■■ 4.94
CTCF-203ENST00000566078 CD109Q6YHK3 1445 aa45.91■■■■■ 4.94
CTCF-203ENST00000566078 CFAP74Q9C0B2 1584 aa45.9■■■■■ 4.94
CTCF-203ENST00000566078 FANCAO15360 1455 aa45.9■■■■■ 4.94
CTCF-203ENST00000566078 KIF13AQ9H1H9 1805 aa45.87■■■■■ 4.93
CTCF-203ENST00000566078 MBD5Q9P267 1494 aa45.86■■■■■ 4.93
CTCF-203ENST00000566078 GCC2Q8IWJ2 1684 aa45.86■■■■■ 4.93
CTCF-203ENST00000566078 KIAA1107Q9UPP5 1409 aa45.83■■■■■ 4.93
CTCF-203ENST00000566078 CCDC141Q6ZP82 1450 aa45.82■■■■■ 4.93
CTCF-203ENST00000566078 HNRNPMP52272 730 aaKnown RBP eCLIP45.81■■■■■ 4.92
CTCF-203ENST00000566078 SHANK2Q9UPX8 1470 aa45.8■■■■■ 4.92
CTCF-203ENST00000566078 CHIC2Q9UKJ5 165 aa45.79■■■■■ 4.92
CTCF-203ENST00000566078 ARHGEF12Q9NZN5 1544 aa45.79■■■■■ 4.92
CTCF-203ENST00000566078 AKNAQ7Z591 1439 aa45.78■■■■■ 4.92
CTCF-203ENST00000566078 SETD5Q9C0A6 1442 aa45.77■■■■■ 4.92
CTCF-203ENST00000566078 HFM1A2PYH4 1435 aa45.77■■■■■ 4.92
CTCF-203ENST00000566078 TSPOAP1O95153 1857 aa45.75■■■■■ 4.91
CTCF-203ENST00000566078 FAM69CQ0P6D2 419 aa45.73■■■■■ 4.91
CTCF-203ENST00000566078 ROCK1Q13464 1354 aa45.71■■■■■ 4.91
CTCF-203ENST00000566078 ADGRL1O94910 1474 aa45.71■■■■■ 4.91
CTCF-203ENST00000566078 C9orf84Q5VXU9 1444 aa45.7■■■■■ 4.91
CTCF-203ENST00000566078 ADGRL2O95490 1459 aa45.7■■■■■ 4.91
CTCF-203ENST00000566078 RAB3GAP2Q9H2M9 1393 aa45.69■■■■■ 4.9
CTCF-203ENST00000566078 NAIPQ13075 1403 aa45.69■■■■■ 4.9
CTCF-203ENST00000566078 MAST1Q9Y2H9 1570 aa45.69■■■■■ 4.9
CTCF-203ENST00000566078 RSPH4AQ5TD94 716 aa45.68■■■■■ 4.9
CTCF-203ENST00000566078 PPRC1Q5VV67 1664 aaKnown RBP45.68■■■■■ 4.9
CTCF-203ENST00000566078 RRP7BPQ9NSQ0 103 aa45.64■■■■■ 4.9
CTCF-203ENST00000566078 NEO1Q92859 1461 aa45.63■■■■■ 4.9
CTCF-203ENST00000566078 TSPY4P0CV99 314 aa45.62■■■■■ 4.89
CTCF-203ENST00000566078 TSPY10P0CW01 314 aa45.62■■■■■ 4.89
CTCF-203ENST00000566078 TRAPPC8Q9Y2L5 1435 aa45.61■■■■■ 4.89
CTCF-203ENST00000566078 SCAPERQ9BY12 1400 aa45.58■■■■■ 4.89
CTCF-203ENST00000566078 NCOA1Q15788 1441 aa45.58■■■■■ 4.89
CTCF-203ENST00000566078 ANKRD30AQ9BXX3 1397 aa45.57■■■■■ 4.88
CTCF-203ENST00000566078 KDM6BO15054 1643 aa45.55■■■■■ 4.88
CTCF-203ENST00000566078 PLXNC1O60486 1568 aa45.53■■■■■ 4.88
CTCF-203ENST00000566078 TEX14Q8IWB6 1497 aa45.48■■■■■ 4.87
CTCF-203ENST00000566078 INO80Q9ULG1 1556 aaPredicted RBP45.47■■■■■ 4.87
CTCF-203ENST00000566078 ZFYVE16Q7Z3T8 1539 aa45.46■■■■■ 4.87
CTCF-203ENST00000566078 HRCP23327 699 aa45.44■■■■■ 4.87
CTCF-203ENST00000566078 CCER1Q8TC90 406 aaPredicted RBP45.44■■■■■ 4.87
CTCF-203ENST00000566078 ZNF518AQ6AHZ1 1483 aa45.43■■■■■ 4.86
CTCF-203ENST00000566078 POGZQ7Z3K3 1410 aa45.42■■■■■ 4.86
CTCF-203ENST00000566078 RICTORQ6R327 1708 aa45.41■■■■■ 4.86
CTCF-203ENST00000566078 AFAP1Q8N556 730 aa45.41■■■■■ 4.86
CTCF-203ENST00000566078 KIF15Q9NS87 1388 aa45.4■■■■■ 4.86
CTCF-203ENST00000566078 KDM5CP41229 1560 aa45.4■■■■■ 4.86
CTCF-203ENST00000566078 ATP7AQ04656 1500 aa45.39■■■■■ 4.86
CTCF-203ENST00000566078 SPAG9O60271 1321 aaKnown RBP45.38■■■■■ 4.85
CTCF-203ENST00000566078 RTEL1-TNFRSF6BF6WH68 1400 aa45.36■■■■■ 4.85
CTCF-203ENST00000566078 DENND4BO75064 1496 aaPredicted RBP45.35■■■■■ 4.85
CTCF-203ENST00000566078 DHX57Q6P158 1386 aaKnown RBP45.34■■■■■ 4.85
CTCF-203ENST00000566078 KIDINS220Q9ULH0 1771 aa45.34■■■■■ 4.85
CTCF-203ENST00000566078 ANKRD50Q9ULJ7 1429 aa45.31■■■■■ 4.84
CTCF-203ENST00000566078 HECW2Q9P2P5 1572 aa45.31■■■■■ 4.84
CTCF-203ENST00000566078 DUOX2Q9NRD8 1548 aa45.28■■■■■ 4.84
CTCF-203ENST00000566078 FRMPD1Q5SYB0 1578 aa45.27■■■■■ 4.84
CTCF-203ENST00000566078 MLH3Q9UHC1 1453 aa45.19■■■■■ 4.82
CTCF-203ENST00000566078 MYT1LQ9UL68 1186 aa45.18■■■■■ 4.82
CTCF-203ENST00000566078 RAPGEF3O95398 923 aa45.17■■■■■ 4.82
CTCF-203ENST00000566078 ACIN1Q9UKV3 1341 aaKnown RBP45.14■■■■■ 4.82
CTCF-203ENST00000566078 ERBINQ96RT1 1412 aa45.14■■■■■ 4.82
CTCF-203ENST00000566078 ABCA6Q8N139 1617 aa45.14■■■■■ 4.82
CTCF-203ENST00000566078 TRHP20396 242 aaPredicted RBP45.13■■■■■ 4.82
CTCF-203ENST00000566078 ZMYM4Q5VZL5 1548 aa45.12■■■■■ 4.81
CTCF-203ENST00000566078 TRIM52Q96A61 297 aa45.12■■■■■ 4.81
CTCF-203ENST00000566078 UNC13BO14795 1591 aa45.08■■■■■ 4.81
CTCF-203ENST00000566078 EIF2AK4Q9P2K8 1649 aaKnown RBP45.05■■■■■ 4.8
CTCF-203ENST00000566078 DIP2CQ9Y2E4 1556 aa45.03■■■■■ 4.8
CTCF-203ENST00000566078 KDM5DQ9BY66 1539 aa45.01■■■■■ 4.8
CTCF-203ENST00000566078 CLSPNQ9HAW4 1339 aa45■■■■■ 4.79
CTCF-203ENST00000566078 COL17A1Q9UMD9 1497 aaPredicted RBP44.97■■■■■ 4.79
CTCF-203ENST00000566078 ZEB1P37275 1124 aaPredicted RBP44.97■■■■■ 4.79
CTCF-203ENST00000566078 A2MP01023 1474 aa44.96■■■■■ 4.79
CTCF-203ENST00000566078 PZPP20742 1482 aa44.96■■■■■ 4.79
CTCF-203ENST00000566078 DHX29Q7Z478 1369 aaKnown RBP44.95■■■■■ 4.79
CTCF-203ENST00000566078 DEPDC5O75140 1603 aa44.95■■■■■ 4.79
CTCF-203ENST00000566078 MAGI2Q86UL8 1455 aa44.92■■■■■ 4.78
Retrieved 100 of 20,778 RNA–protein pairs in 60.1 ms