RNA–Protein interactions for RNA: ENST00000563692.1

VPS39-207, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 4

Gene VPS39, Length 587 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-207ENST00000563692 SCAPERQ9BY12 1400 aa13.61□□□□□ -0.23
VPS39-207ENST00000563692 ARHGAP5Q13017 1502 aa13.6□□□□□ -0.23
VPS39-207ENST00000563692 FRMPD1Q5SYB0 1578 aa13.59□□□□□ -0.23
VPS39-207ENST00000563692 POGZQ7Z3K3 1410 aa13.58□□□□□ -0.24
VPS39-207ENST00000563692 MYT1LQ9UL68 1186 aa13.58□□□□□ -0.24
VPS39-207ENST00000563692 MAGI2Q86UL8 1455 aa13.58□□□□□ -0.24
VPS39-207ENST00000563692 MYO5CQ9NQX4 1742 aa13.58□□□□□ -0.24
VPS39-207ENST00000563692 MAP3K1Q13233 1512 aa13.57□□□□□ -0.24
VPS39-207ENST00000563692 ARHGEF40Q8TER5 1519 aa13.57□□□□□ -0.24
VPS39-207ENST00000563692 ZMYM4Q5VZL5 1548 aa13.56□□□□□ -0.24
VPS39-207ENST00000563692 ZFYVE16Q7Z3T8 1539 aa13.56□□□□□ -0.24
VPS39-207ENST00000563692 RICTORQ6R327 1708 aa13.56□□□□□ -0.24
VPS39-207ENST00000563692 MTUS2Q5JR59 1369 aa13.55□□□□□ -0.24
VPS39-207ENST00000563692 ZNF518AQ6AHZ1 1483 aa13.54□□□□□ -0.24
VPS39-207ENST00000563692 LRRIQ1Q96JM4 1722 aa13.53□□□□□ -0.24
VPS39-207ENST00000563692 KANK4Q5T7N3 995 aaPredicted RBP13.53□□□□□ -0.24
VPS39-207ENST00000563692 YEATS2Q9ULM3 1422 aa13.53□□□□□ -0.24
VPS39-207ENST00000563692 AFAP1Q8N556 730 aa13.52□□□□□ -0.25
VPS39-207ENST00000563692 ZNF777Q9ULD5 760 aaPredicted RBP13.52□□□□□ -0.25
VPS39-207ENST00000563692 ATP10AO60312 1499 aa13.5□□□□□ -0.25
VPS39-207ENST00000563692 CCNB3Q8WWL7 1395 aa13.5□□□□□ -0.25
VPS39-207ENST00000563692 MLECQ14165 292 aa13.5□□□□□ -0.25
VPS39-207ENST00000563692 CFDP1Q9UEE9 299 aaPredicted RBP13.5□□□□□ -0.25
VPS39-207ENST00000563692 PTPRMP28827 1452 aa13.49□□□□□ -0.25
VPS39-207ENST00000563692 C9orf84Q5VXU9 1444 aa13.49□□□□□ -0.25
VPS39-207ENST00000563692 PREX2Q70Z35 1606 aa13.49□□□□□ -0.25
VPS39-207ENST00000563692 TIAM1Q13009 1591 aa13.49□□□□□ -0.25
VPS39-207ENST00000563692 BCORL1Q5H9F3 1711 aa13.48□□□□□ -0.25
VPS39-207ENST00000563692 ADAMTSL3P82987 1691 aa13.48□□□□□ -0.25
VPS39-207ENST00000563692 HRCP23327 699 aa13.47□□□□□ -0.25
VPS39-207ENST00000563692 LRRC9Q6ZRR7 1453 aa13.47□□□□□ -0.25
VPS39-207ENST00000563692 ABCC1P33527 1531 aa13.46□□□□□ -0.25
VPS39-207ENST00000563692 GPATCH8Q9UKJ3 1502 aaKnown RBP13.46□□□□□ -0.25
VPS39-207ENST00000563692 KDM5CP41229 1560 aa13.45□□□□□ -0.26
VPS39-207ENST00000563692 HECW2Q9P2P5 1572 aa13.45□□□□□ -0.26
VPS39-207ENST00000563692 EHBP1L1Q8N3D4 1523 aa13.45□□□□□ -0.26
VPS39-207ENST00000563692 CDC42BPBQ9Y5S2 1711 aa13.45□□□□□ -0.26
VPS39-207ENST00000563692 PLEKHH2Q8IVE3 1493 aa13.45□□□□□ -0.26
VPS39-207ENST00000563692 PLPPR3Q6T4P5 718 aa13.45□□□□□ -0.26
VPS39-207ENST00000563692 MADDQ8WXG6 1647 aa13.45□□□□□ -0.26
VPS39-207ENST00000563692 TRAPPC8Q9Y2L5 1435 aa13.45□□□□□ -0.26
VPS39-207ENST00000563692 MLH3Q9UHC1 1453 aa13.44□□□□□ -0.26
VPS39-207ENST00000563692 ZEB1P37275 1124 aaPredicted RBP13.44□□□□□ -0.26
VPS39-207ENST00000563692 SPAG9O60271 1321 aaKnown RBP13.43□□□□□ -0.26
VPS39-207ENST00000563692 CDC42BPAQ5VT25 1732 aa13.43□□□□□ -0.26
VPS39-207ENST00000563692 ESF1Q9H501 851 aaKnown RBP13.43□□□□□ -0.26
VPS39-207ENST00000563692 KIAA1107Q9UPP5 1409 aa13.42□□□□□ -0.26
VPS39-207ENST00000563692 HNRNPMP52272 730 aaKnown RBP eCLIP13.42□□□□□ -0.26
VPS39-207ENST00000563692 ARHGEF12Q9NZN5 1544 aa13.42□□□□□ -0.26
VPS39-207ENST00000563692 RIMS1Q86UR5 1692 aaKnown RBP13.4□□□□□ -0.26
VPS39-207ENST00000563692 SYCP2Q9BX26 1530 aa13.4□□□□□ -0.26
VPS39-207ENST00000563692 SAMD9LQ8IVG5 1584 aa13.4□□□□□ -0.26
VPS39-207ENST00000563692 ITSN2Q9NZM3 1697 aa13.4□□□□□ -0.26
VPS39-207ENST00000563692 RRBP1Q9P2E9 1410 aaKnown RBP13.39□□□□□ -0.27
VPS39-207ENST00000563692 DIP2CQ9Y2E4 1556 aa13.38□□□□□ -0.27
VPS39-207ENST00000563692 REREQ9P2R6 1566 aa13.37□□□□□ -0.27
VPS39-207ENST00000563692 NCOA2Q15596 1464 aa13.36□□□□□ -0.27
VPS39-207ENST00000563692 ABCA6Q8N139 1617 aa13.36□□□□□ -0.27
VPS39-207ENST00000563692 ZNF644Q9H582 1327 aaPredicted RBP13.36□□□□□ -0.27
VPS39-207ENST00000563692 SIGLEC1Q9BZZ2 1709 aa13.36□□□□□ -0.27
VPS39-207ENST00000563692 FER1L4A9Z1Z3 1794 aa13.35□□□□□ -0.27
VPS39-207ENST00000563692 AGLP35573 1532 aa13.35□□□□□ -0.27
VPS39-207ENST00000563692 RSPH4AQ5TD94 716 aa13.35□□□□□ -0.27
VPS39-207ENST00000563692 SUPT6HQ7KZ85 1726 aaKnown RBP13.35□□□□□ -0.27
VPS39-207ENST00000563692 CCER1Q8TC90 406 aaPredicted RBP13.34□□□□□ -0.27
VPS39-207ENST00000563692 ATP7AQ04656 1500 aa13.34□□□□□ -0.27
VPS39-207ENST00000563692 KIDINS220Q9ULH0 1771 aa13.32□□□□□ -0.28
VPS39-207ENST00000563692 CNTLNQ9NXG0 1405 aa13.32□□□□□ -0.28
VPS39-207ENST00000563692 LMTK3Q96Q04 1460 aa13.32□□□□□ -0.28
VPS39-207ENST00000563692 CEBPAP49715 358 aaPredicted RBP13.32□□□□□ -0.28
VPS39-207ENST00000563692 A2MP01023 1474 aa13.31□□□□□ -0.28
VPS39-207ENST00000563692 FAM50AQ14320 339 aaKnown RBP13.31□□□□□ -0.28
VPS39-207ENST00000563692 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP13.31□□□□□ -0.28
VPS39-207ENST00000563692 MBD5Q9P267 1494 aa13.3□□□□□ -0.28
VPS39-207ENST00000563692 TSPY4P0CV99 314 aa13.3□□□□□ -0.28
VPS39-207ENST00000563692 TSPY10P0CW01 314 aa13.3□□□□□ -0.28
VPS39-207ENST00000563692 HSPA2P54652 639 aa13.3□□□□□ -0.28
VPS39-207ENST00000563692 RTEL1-TNFRSF6BF6WH68 1400 aa13.3□□□□□ -0.28
VPS39-207ENST00000563692 CAMSAP2Q08AD1 1489 aa13.29□□□□□ -0.28
VPS39-207ENST00000563692 CCDC141Q6ZP82 1450 aa13.29□□□□□ -0.28
VPS39-207ENST00000563692 INO80Q9ULG1 1556 aaPredicted RBP13.28□□□□□ -0.28
VPS39-207ENST00000563692 GGT6Q6P531 493 aa13.28□□□□□ -0.28
VPS39-207ENST00000563692 UHRF1BP1Q6BDS2 1440 aa13.28□□□□□ -0.28
VPS39-207ENST00000563692 ITGAEP38570 1179 aa13.27□□□□□ -0.29
VPS39-207ENST00000563692 PPP6R1Q9UPN7 881 aa13.27□□□□□ -0.29
VPS39-207ENST00000563692 MYOM3Q5VTT5 1437 aa13.25□□□□□ -0.29
VPS39-207ENST00000563692 MIA2Q96PC5 1412 aa13.25□□□□□ -0.29
VPS39-207ENST00000563692 DHX29Q7Z478 1369 aaKnown RBP13.25□□□□□ -0.29
VPS39-207ENST00000563692 PLXNC1O60486 1568 aa13.24□□□□□ -0.29
VPS39-207ENST00000563692 FGD6Q6ZV73 1430 aa13.24□□□□□ -0.29
VPS39-207ENST00000563692 ZMYM3Q14202 1370 aa13.24□□□□□ -0.29
VPS39-207ENST00000563692 KIF3BO15066 747 aa13.23□□□□□ -0.29
VPS39-207ENST00000563692 ADGBQ8N7X0 1667 aa13.23□□□□□ -0.29
VPS39-207ENST00000563692 ARHGEF5Q12774 1597 aa13.23□□□□□ -0.29
VPS39-207ENST00000563692 DMRT2Q9Y5R5 561 aa13.22□□□□□ -0.29
VPS39-207ENST00000563692 NPATQ14207 1427 aa13.22□□□□□ -0.29
VPS39-207ENST00000563692 PREX1Q8TCU6 1659 aa13.21□□□□□ -0.29
VPS39-207ENST00000563692 ILDR1Q86SU0 546 aaPredicted RBP13.21□□□□□ -0.29
VPS39-207ENST00000563692 SETD1BQ9UPS6 1966 aaKnown RBP13.21□□□□□ -0.29
VPS39-207ENST00000563692 C3P01024 1663 aa13.2□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms