RNA–Protein interactions for RNA: ENST00000559389.1

SNX1-206, Transcript of sorting nexin 1, humanhuman

TSL 5

Gene SNX1, Length 753 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-206ENST00000559389 GPATCH8Q9UKJ3 1502 aaKnown RBP33.94■■■■□ 3.02
SNX1-206ENST00000559389 ARHGAP5Q13017 1502 aa33.92■■■■□ 3.02
SNX1-206ENST00000559389 CCNB3Q8WWL7 1395 aa33.9■■■■□ 3.02
SNX1-206ENST00000559389 KDM6BO15054 1643 aa33.88■■■■□ 3.01
SNX1-206ENST00000559389 PHLDB1Q86UU1 1377 aa33.85■■■■□ 3.01
SNX1-206ENST00000559389 AKNAQ7Z591 1439 aa33.81■■■■□ 3
SNX1-206ENST00000559389 EFCAB2Q5VUJ9 269 aa33.79■■■■□ 3
SNX1-206ENST00000559389 COL17A1Q9UMD9 1497 aaPredicted RBP33.79■■■■□ 3
SNX1-206ENST00000559389 SAMD9LQ8IVG5 1584 aa33.79■■■■□ 3
SNX1-206ENST00000559389 ABCC1P33527 1531 aa33.78■■■■□ 3
SNX1-206ENST00000559389 ADGRL1O94910 1474 aa33.77■■■■□ 3
SNX1-206ENST00000559389 MYOM3Q5VTT5 1437 aa33.76■■■□□ 2.99
SNX1-206ENST00000559389 FRMPD1Q5SYB0 1578 aa33.73■■■□□ 2.99
SNX1-206ENST00000559389 CFDP1Q9UEE9 299 aaPredicted RBP33.72■■■□□ 2.99
SNX1-206ENST00000559389 RICTORQ6R327 1708 aa33.7■■■□□ 2.99
SNX1-206ENST00000559389 DENND4BO75064 1496 aaPredicted RBP33.69■■■□□ 2.98
SNX1-206ENST00000559389 MIA2Q96PC5 1412 aa33.68■■■□□ 2.98
SNX1-206ENST00000559389 SCAPERQ9BY12 1400 aa33.68■■■□□ 2.98
SNX1-206ENST00000559389 PLEKHH2Q8IVE3 1493 aa33.67■■■□□ 2.98
SNX1-206ENST00000559389 CAMSAP2Q08AD1 1489 aa33.66■■■□□ 2.98
SNX1-206ENST00000559389 POGZQ7Z3K3 1410 aa33.66■■■□□ 2.98
SNX1-206ENST00000559389 SYCP2Q9BX26 1530 aa33.66■■■□□ 2.98
SNX1-206ENST00000559389 ARHGEF12Q9NZN5 1544 aa33.65■■■□□ 2.98
SNX1-206ENST00000559389 KIAA1107Q9UPP5 1409 aa33.62■■■□□ 2.97
SNX1-206ENST00000559389 ZNF777Q9ULD5 760 aaPredicted RBP33.62■■■□□ 2.97
SNX1-206ENST00000559389 FGD6Q6ZV73 1430 aa33.62■■■□□ 2.97
SNX1-206ENST00000559389 PPARGC1BQ86YN6 1023 aaKnown RBP33.61■■■□□ 2.97
SNX1-206ENST00000559389 ZMYM4Q5VZL5 1548 aa33.61■■■□□ 2.97
SNX1-206ENST00000559389 PTPN23Q9H3S7 1636 aa33.59■■■□□ 2.97
SNX1-206ENST00000559389 KDM5CP41229 1560 aa33.59■■■□□ 2.97
SNX1-206ENST00000559389 ZNF518AQ6AHZ1 1483 aa33.58■■■□□ 2.97
SNX1-206ENST00000559389 ZNF644Q9H582 1327 aaPredicted RBP33.57■■■□□ 2.97
SNX1-206ENST00000559389 RAPGEF3O95398 923 aa33.56■■■□□ 2.96
SNX1-206ENST00000559389 TCOF1Q13428 1488 aaKnown RBP33.56■■■□□ 2.96
SNX1-206ENST00000559389 TRAPPC8Q9Y2L5 1435 aa33.55■■■□□ 2.96
SNX1-206ENST00000559389 MBD5Q9P267 1494 aa33.54■■■□□ 2.96
SNX1-206ENST00000559389 ARHGEF5Q12774 1597 aa33.51■■■□□ 2.96
SNX1-206ENST00000559389 HECW2Q9P2P5 1572 aa33.49■■■□□ 2.95
SNX1-206ENST00000559389 ARHGEF40Q8TER5 1519 aa33.47■■■□□ 2.95
SNX1-206ENST00000559389 CCDC141Q6ZP82 1450 aa33.46■■■□□ 2.95
SNX1-206ENST00000559389 HNRNPMP52272 730 aaKnown RBP eCLIP33.46■■■□□ 2.95
SNX1-206ENST00000559389 MAGI2Q86UL8 1455 aa33.45■■■□□ 2.95
SNX1-206ENST00000559389 INO80Q9ULG1 1556 aaPredicted RBP33.43■■■□□ 2.94
SNX1-206ENST00000559389 AFAP1Q8N556 730 aa33.43■■■□□ 2.94
SNX1-206ENST00000559389 ZFYVE16Q7Z3T8 1539 aa33.43■■■□□ 2.94
SNX1-206ENST00000559389 MLH3Q9UHC1 1453 aa33.42■■■□□ 2.94
SNX1-206ENST00000559389 DNMT1P26358 1616 aaKnown RBP33.4■■■□□ 2.94
SNX1-206ENST00000559389 CROCC2H7BZ55 1655 aa33.39■■■□□ 2.94
SNX1-206ENST00000559389 KIDINS220Q9ULH0 1771 aa33.39■■■□□ 2.94
SNX1-206ENST00000559389 RRBP1Q9P2E9 1410 aaKnown RBP33.37■■■□□ 2.93
SNX1-206ENST00000559389 ATP7AQ04656 1500 aa33.37■■■□□ 2.93
SNX1-206ENST00000559389 YEATS2Q9ULM3 1422 aa33.36■■■□□ 2.93
SNX1-206ENST00000559389 ABCA6Q8N139 1617 aa33.35■■■□□ 2.93
SNX1-206ENST00000559389 DIP2CQ9Y2E4 1556 aa33.34■■■□□ 2.93
SNX1-206ENST00000559389 MAST1Q9Y2H9 1570 aa33.34■■■□□ 2.93
SNX1-206ENST00000559389 RSPH4AQ5TD94 716 aa33.34■■■□□ 2.93
SNX1-206ENST00000559389 SHANK2Q9UPX8 1470 aa33.32■■■□□ 2.92
SNX1-206ENST00000559389 DAPK1P53355 1430 aa33.32■■■□□ 2.92
SNX1-206ENST00000559389 SPAG9O60271 1321 aaKnown RBP33.31■■■□□ 2.92
SNX1-206ENST00000559389 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP33.31■■■□□ 2.92
SNX1-206ENST00000559389 ABCC5O15440 1437 aa33.3■■■□□ 2.92
SNX1-206ENST00000559389 RTEL1-TNFRSF6BF6WH68 1400 aa33.29■■■□□ 2.92
SNX1-206ENST00000559389 FAM50AQ14320 339 aaKnown RBP33.28■■■□□ 2.92
SNX1-206ENST00000559389 C9orf84Q5VXU9 1444 aa33.26■■■□□ 2.91
SNX1-206ENST00000559389 REREQ9P2R6 1566 aa33.26■■■□□ 2.91
SNX1-206ENST00000559389 ATP10AO60312 1499 aa33.23■■■□□ 2.91
SNX1-206ENST00000559389 PLXNC1O60486 1568 aa33.22■■■□□ 2.91
SNX1-206ENST00000559389 ADGBQ8N7X0 1667 aa33.22■■■□□ 2.91
SNX1-206ENST00000559389 SIGLEC1Q9BZZ2 1709 aa33.21■■■□□ 2.91
SNX1-206ENST00000559389 MYT1LQ9UL68 1186 aa33.2■■■□□ 2.91
SNX1-206ENST00000559389 TSPY4P0CV99 314 aa33.19■■■□□ 2.9
SNX1-206ENST00000559389 TSPY10P0CW01 314 aa33.19■■■□□ 2.9
SNX1-206ENST00000559389 ADGRL2O95490 1459 aa33.14■■■□□ 2.9
SNX1-206ENST00000559389 A2MP01023 1474 aa33.12■■■□□ 2.89
SNX1-206ENST00000559389 PTPRKQ15262 1439 aa33.12■■■□□ 2.89
SNX1-206ENST00000559389 AGLP35573 1532 aa33.1■■■□□ 2.89
SNX1-206ENST00000559389 ANKRD30AQ9BXX3 1397 aa33.05■■■□□ 2.88
SNX1-206ENST00000559389 KIF15Q9NS87 1388 aa33.04■■■□□ 2.88
SNX1-206ENST00000559389 NCOA1Q15788 1441 aa33.03■■■□□ 2.88
SNX1-206ENST00000559389 DUOX2Q9NRD8 1548 aa33.03■■■□□ 2.88
SNX1-206ENST00000559389 BCORL1Q5H9F3 1711 aa33.02■■■□□ 2.88
SNX1-206ENST00000559389 ROCK1Q13464 1354 aa33.01■■■□□ 2.88
SNX1-206ENST00000559389 DHX29Q7Z478 1369 aaKnown RBP33.01■■■□□ 2.88
SNX1-206ENST00000559389 CHIC2Q9UKJ5 165 aa33.01■■■□□ 2.87
SNX1-206ENST00000559389 EIF2AK4Q9P2K8 1649 aaKnown RBP32.99■■■□□ 2.87
SNX1-206ENST00000559389 ITGAEP38570 1179 aa32.99■■■□□ 2.87
SNX1-206ENST00000559389 ARID4BQ4LE39 1312 aaPredicted RBP32.96■■■□□ 2.87
SNX1-206ENST00000559389 ERBINQ96RT1 1412 aa32.95■■■□□ 2.87
SNX1-206ENST00000559389 ADAMTSL3P82987 1691 aa32.94■■■□□ 2.86
SNX1-206ENST00000559389 RRP7BPQ9NSQ0 103 aa32.93■■■□□ 2.86
SNX1-206ENST00000559389 RNF17Q9BXT8 1623 aaKnown RBP32.91■■■□□ 2.86
SNX1-206ENST00000559389 GCC2Q8IWJ2 1684 aa32.89■■■□□ 2.86
SNX1-206ENST00000559389 MADDQ8WXG6 1647 aa32.87■■■□□ 2.85
SNX1-206ENST00000559389 FER1L4A9Z1Z3 1794 aa32.85■■■□□ 2.85
SNX1-206ENST00000559389 ANKRD50Q9ULJ7 1429 aa32.84■■■□□ 2.85
SNX1-206ENST00000559389 MROH1Q8NDA8 1641 aa32.84■■■□□ 2.85
SNX1-206ENST00000559389 DEPDC5O75140 1603 aa32.83■■■□□ 2.85
SNX1-206ENST00000559389 HFM1A2PYH4 1435 aa32.81■■■□□ 2.84
SNX1-206ENST00000559389 MLECQ14165 292 aa32.81■■■□□ 2.84
SNX1-206ENST00000559389 KIF3BO15066 747 aa32.8■■■□□ 2.84
Retrieved 100 of 20,778 RNA–protein pairs in 9.3 ms