RNA–Protein interactions for RNA: ENST00000559389.1

SNX1-206, Transcript of sorting nexin 1, humanhuman

TSL 5

Gene SNX1, Length 753 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-206ENST00000559389 NISCHQ9Y2I1 1504 aa52.1■■■■■ 5.93
SNX1-206ENST00000559389 CCDC180Q9P1Z9 1646 aa46.21■■■■■ 4.99
SNX1-206ENST00000559389 ABCC9O60706 1549 aa44.63■■■■■ 4.73
SNX1-206ENST00000559389 ZCCHC6Q5VYS8 1495 aaKnown RBP43.56■■■■■ 4.56
SNX1-206ENST00000559389 NACADO15069 1562 aa43.27■■■■■ 4.52
SNX1-206ENST00000559389 MYO15BQ96JP2 1530 aa43.2■■■■■ 4.51
SNX1-206ENST00000559389 RB1CC1Q8TDY2 1594 aa43.2■■■■■ 4.51
SNX1-206ENST00000559389 DCAF1Q9Y4B6 1507 aa43.18■■■■■ 4.5
SNX1-206ENST00000559389 DCAF8L2P0C7V8 631 aa43.09■■■■■ 4.49
SNX1-206ENST00000559389 UNC13AQ9UPW8 1703 aa42.28■■■■■ 4.36
SNX1-206ENST00000559389 SCRIBQ14160 1630 aa42.14■■■■■ 4.34
SNX1-206ENST00000559389 BICRAQ9NZM4 1560 aa41.9■■■■■ 4.3
SNX1-206ENST00000559389 PABPN1Q86U42 306 aaKnown RBP eCLIP41.68■■■■■ 4.26
SNX1-206ENST00000559389 SHROOM4Q9ULL8 1493 aa41.54■■■■■ 4.24
SNX1-206ENST00000559389 EIF4G1Q04637 1599 aaKnown RBP40.74■■■■■ 4.11
SNX1-206ENST00000559389 CECR2Q9BXF3 1484 aa40.51■■■■■ 4.08
SNX1-206ENST00000559389 DNAJC5BQ9UF47 199 aa40.44■■■■■ 4.06
SNX1-206ENST00000559389 CC2D2AQ9P2K1 1620 aa40.44■■■■■ 4.06
SNX1-206ENST00000559389 BAZ1AQ9NRL2 1556 aaPredicted RBP40.38■■■■■ 4.05
SNX1-206ENST00000559389 SMARCA4P51532 1647 aa40.38■■■■■ 4.05
SNX1-206ENST00000559389 MROH2BQ7Z745 1585 aa40.17■■■■■ 4.02
SNX1-206ENST00000559389 PEG3Q9GZU2 1588 aa39.99■■■■□ 3.99
SNX1-206ENST00000559389 SMARCA2P51531 1590 aa39.98■■■■□ 3.99
SNX1-206ENST00000559389 ATAD2BQ9ULI0 1458 aa39.98■■■■□ 3.99
SNX1-206ENST00000559389 NCAPD3P42695 1498 aa39.88■■■■□ 3.97
SNX1-206ENST00000559389 RSF1Q96T23 1441 aaPredicted RBP39.84■■■■□ 3.97
SNX1-206ENST00000559389 HMGXB3Q12766 1538 aa39.81■■■■□ 3.96
SNX1-206ENST00000559389 WIZO95785 1651 aa39.76■■■■□ 3.96
SNX1-206ENST00000559389 BAZ1BQ9UIG0 1483 aaKnown RBP39.68■■■■□ 3.94
SNX1-206ENST00000559389 TOP2AP11388 1531 aaKnown RBP39.41■■■■□ 3.9
SNX1-206ENST00000559389 SUPT5HO00267 1087 aaKnown RBP39.04■■■■□ 3.84
SNX1-206ENST00000559389 CCDC88BA6NC98 1476 aa38.86■■■■□ 3.81
SNX1-206ENST00000559389 LAMC3Q9Y6N6 1575 aa38.8■■■■□ 3.8
SNX1-206ENST00000559389 NESP48681 1621 aa38.78■■■■□ 3.8
SNX1-206ENST00000559389 CADPSQ9ULU8 1353 aa38.7■■■■□ 3.79
SNX1-206ENST00000559389 CFTRP13569 1480 aa38.62■■■■□ 3.77
SNX1-206ENST00000559389 PRDM2Q13029 1718 aa38.48■■■■□ 3.75
SNX1-206ENST00000559389 PDS5BQ9NTI5 1447 aa38.44■■■■□ 3.74
SNX1-206ENST00000559389 ERCC6Q03468 1493 aa38.42■■■■□ 3.74
SNX1-206ENST00000559389 KIF21AQ7Z4S6 1674 aa38.39■■■■□ 3.74
SNX1-206ENST00000559389 FANCD2Q9BXW9 1451 aa38.3■■■■□ 3.72
SNX1-206ENST00000559389 CEP164Q9UPV0 1460 aa38.22■■■■□ 3.71
SNX1-206ENST00000559389 THOC2Q8NI27 1593 aaKnown RBP38.19■■■■□ 3.7
SNX1-206ENST00000559389 MRC2Q9UBG0 1479 aa38.09■■■■□ 3.69
SNX1-206ENST00000559389 WDR62O43379 1518 aa37.98■■■■□ 3.67
SNX1-206ENST00000559389 URB2Q14146 1524 aaKnown RBP37.92■■■■□ 3.66
SNX1-206ENST00000559389 CUX2O14529 1486 aa37.9■■■■□ 3.66
SNX1-206ENST00000559389 DNMBPQ6XZF7 1577 aa37.79■■■■□ 3.64
SNX1-206ENST00000559389 TOPBP1Q92547 1522 aa37.77■■■■□ 3.64
SNX1-206ENST00000559389 ABCC8Q09428 1581 aa37.76■■■■□ 3.63
SNX1-206ENST00000559389 CUX1P39880 1505 aa37.66■■■■□ 3.62
SNX1-206ENST00000559389 WRNQ14191 1432 aaPredicted RBP eCLIP37.56■■■■□ 3.6
SNX1-206ENST00000559389 BIVM-ERCC5R4GMW8 1640 aa37.51■■■■□ 3.6
SNX1-206ENST00000559389 SYNJ1O43426 1573 aa37.51■■■■□ 3.59
SNX1-206ENST00000559389 TOP2BQ02880 1626 aa37.48■■■■□ 3.59
SNX1-206ENST00000559389 POLA1P09884 1462 aaPredicted RBP37.47■■■■□ 3.59
SNX1-206ENST00000559389 FGD5Q6ZNL6 1462 aa37.45■■■■□ 3.59
SNX1-206ENST00000559389 IFT140Q96RY7 1462 aa37.39■■■■□ 3.58
SNX1-206ENST00000559389 TARBP1Q13395 1621 aaKnown RBP37.35■■■■□ 3.57
SNX1-206ENST00000559389 RAD54L2Q9Y4B4 1467 aa37.26■■■■□ 3.56
SNX1-206ENST00000559389 SOGA1O94964 1423 aa37.25■■■■□ 3.55
SNX1-206ENST00000559389 WDR97A6NE52 1622 aa37.23■■■■□ 3.55
SNX1-206ENST00000559389 ZNF608Q9ULD9 1512 aaPredicted RBP37.18■■■■□ 3.54
SNX1-206ENST00000559389 EIF4G3O43432 1585 aaKnown RBP37.13■■■■□ 3.53
SNX1-206ENST00000559389 ABCA10Q8WWZ4 1543 aa37.12■■■■□ 3.53
SNX1-206ENST00000559389 ABCA5Q8WWZ7 1642 aa36.99■■■■□ 3.51
SNX1-206ENST00000559389 AQRO60306 1485 aaKnown RBP eCLIP36.97■■■■□ 3.519e-7■■■■□ 26.4
SNX1-206ENST00000559389 TDRD9Q8NDG6 1382 aaKnown RBP36.97■■■■□ 3.51
SNX1-206ENST00000559389 GAPVD1Q14C86 1478 aa36.87■■■■□ 3.49
SNX1-206ENST00000559389 PBRM1Q86U86 1689 aa36.86■■■■□ 3.49
SNX1-206ENST00000559389 TRIM41Q8WV44 630 aa36.85■■■■□ 3.49
SNX1-206ENST00000559389 GRIN2BQ13224 1484 aa36.82■■■■□ 3.49
SNX1-206ENST00000559389 CHIC1Q5VXU3 224 aa36.74■■■■□ 3.47
SNX1-206ENST00000559389 SNAPC4Q5SXM2 1469 aa36.72■■■■□ 3.47
SNX1-206ENST00000559389 KIF27Q86VH2 1401 aa36.72■■■■□ 3.47
SNX1-206ENST00000559389 MAGI1Q96QZ7 1491 aaPredicted RBP36.7■■■■□ 3.47
SNX1-206ENST00000559389 ERICH3Q5RHP9 1530 aa36.69■■■■□ 3.46
SNX1-206ENST00000559389 ADAMTS12P58397 1594 aa36.61■■■■□ 3.45
SNX1-206ENST00000559389 CHD1O14646 1710 aa36.56■■■■□ 3.44
SNX1-206ENST00000559389 SYNJ2O15056 1496 aa36.53■■■■□ 3.44
SNX1-206ENST00000559389 RUSC2Q8N2Y8 1516 aa36.53■■■■□ 3.44
SNX1-206ENST00000559389 CUL7Q14999 1698 aa36.49■■■■□ 3.43
SNX1-206ENST00000559389 IGF1RP08069 1367 aa36.47■■■■□ 3.43
SNX1-206ENST00000559389 FHAD1B1AJZ9 1412 aa36.47■■■■□ 3.43
SNX1-206ENST00000559389 GRIN2AQ12879 1464 aa36.37■■■■□ 3.41
SNX1-206ENST00000559389 EEA1Q15075 1411 aa36.36■■■■□ 3.41
SNX1-206ENST00000559389 FBLN2P98095 1184 aa36.34■■■■□ 3.41
SNX1-206ENST00000559389 CHMP7Q8WUX9 453 aaPredicted RBP36.34■■■■□ 3.41
SNX1-206ENST00000559389 CARMIL1Q5VZK9 1371 aa36.27■■■■□ 3.4
SNX1-206ENST00000559389 OSCARQ8IYS5 282 aa36.26■■■■□ 3.4
SNX1-206ENST00000559389 CEP170Q5SW79 1584 aa36.2■■■■□ 3.39
SNX1-206ENST00000559389 NUP160Q12769 1436 aa36.19■■■■□ 3.38
SNX1-206ENST00000559389 CLASP1Q7Z460 1538 aa36.18■■■■□ 3.38
SNX1-206ENST00000559389 PRXQ9BXM0 1461 aa36.18■■■■□ 3.38
SNX1-206ENST00000559389 RAPGEF2Q9Y4G8 1499 aa36.15■■■■□ 3.38
SNX1-206ENST00000559389 CSRNP3Q8WYN3 585 aa36.12■■■■□ 3.37
SNX1-206ENST00000559389 FAM9AQ8IZU1 332 aaPredicted RBP36.06■■■■□ 3.36
SNX1-206ENST00000559389 DNAJC5Q9H3Z4 198 aa36.04■■■■□ 3.36
SNX1-206ENST00000559389 KIF21BO75037 1637 aa36.01■■■■□ 3.36
SNX1-206ENST00000559389 KIAA0586Q9BVV6 1533 aa35.93■■■■□ 3.34
Retrieved 100 of 20,778 RNA–protein pairs in 378.5 ms